mRNA_H-paniculata_contig27405.7501.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27405.7501.1
Unique NamemRNA_H-paniculata_contig27405.7501.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27405.7501.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 9.650e-41
Identity = 82/173 (47.40%), Postives = 110/173 (63.58%), Query Frame = 1
Query:   13 QARFGSVAMAVPKKD----TYRMVVDYRAVNNVIAPSAMPMPNLEETGRGMVGASVFCKLDLLQSYWQMPLDPQAQEIFTMVTTKGVYTPTRVPQGVLNATSYFQGTMGDVLAGLLGKVCEVWVDDIGIWAGTWQELMQRVRVVLERRQVRGIYAAAHKARLFRREMRWCGKI 519
            QA + S  M  PK+     TYR V D+RAVN  I  S  PMP+LE   + +  A+ +  LD+LQ YW MPL P+AQEIFTM+   G+Y+P RVPQGVLNATSY+QGTM  +L  L    C VWVDDI  W  T ++L+  + ++L R +  G++ AAHK   +   ++WCGK+
Sbjct:  692 QAIWASAIMLTPKRSGDKVTYRFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKWCGKV 861          
BLAST of mRNA_H-paniculata_contig27405.7501.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.320e-40
Identity = 81/169 (47.93%), Postives = 105/169 (62.13%), Query Frame = 1
Query:   13 QARFGSVAMAVPKKDTYRMVVDYRAVNNVIAPSAMPMPNLEETGRGMVGASVFCKLDLLQSYWQMPLDPQAQEIFTMVTTKGVYTPTRVPQGVLNATSYFQGTMGDVLAGLLGKVCEVWVDDIGIWAGTWQELMQRVRVVLERRQVRGIYAAAHKARLFRREMRWCGKI 519
            QA + S AMA PKK  YR+V D+RA N  +      MPN E +   +  A  +  LDLLQ YWQ PL P+AQEIFT+ T  G+YTP RVPQG+LNATSYFQ T+  +L GL    C VWVDD+  W     +L+  + ++L+R +  G+Y AAHK   F   + WCGK+
Sbjct:  794 QAVWASAAMATPKKGGYRLVSDFRAANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITWCGKV 959          
BLAST of mRNA_H-paniculata_contig27405.7501.1 vs. uniprot
Match: A0A6A3L091_9STRA (RNA-directed DNA polymerase n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L091_9STRA)

HSP 1 Score: 127 bits (319), Expect = 8.450e-31
Identity = 66/173 (38.15%), Postives = 101/173 (58.38%), Query Frame = 1
Query:    4 RKPQARFGSVAMAVPKKDT-YRMVVDYRAVNNVIAPSAMPMPNLEETGRGMVGASVFCKLDLLQSYWQMPLDPQAQEIFTMVTTKGVYTPTRVPQGVLNATSYFQGTMGDVLAGLLGKVCEVWVDDIGIWAGTWQELMQRVRVVLERRQVRGIYAAAHKARLFRREMRWCGKI 519
            R  QAR+ S  + V K    +R+  DYR +N++  P A  MPNL      + GA  F + DLL+ +WQ+PL P  QE+F+ +T   VYTPTRVPQG  ++  +FQ  +  +LA LL + C +W+DDI ++A +  E ++  R   E  +  G+  +  K  LF+ ++ WCGK+
Sbjct:  397 RNDQARWASPVVPVKKPGGGFRITTDYRVINSMTVPIAGTMPNLASAAGAVRGAVAFARFDLLKGFWQLPLHPNCQEMFSFLTEDAVYTPTRVPQGATDSALHFQAQLQRILAPLLHRNCLLWIDDILLFASSMDEFLRVFREFFELIKDHGLKLSVTKCVLFQPQVLWCGKM 569          
BLAST of mRNA_H-paniculata_contig27405.7501.1 vs. uniprot
Match: A0A6A3GQ28_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GQ28_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.300e-30
Identity = 63/158 (39.87%), Postives = 93/158 (58.86%), Query Frame = 1
Query:   46 PKKDTYRMVVDYRAVNNVIAPSAMPMPNLEETGRGMVGASVFCKLDLLQSYWQMPLDPQAQEIFTMVTTKGVYTPTRVPQGVLNATSYFQGTMGDVLAGLLGKVCEVWVDDIGIWAGTWQELMQRVRVVLERRQVRGIYAAAHKARLFRREMRWCGKI 519
            P  D++R   DYR +NNV  P A  MP+LE       G   +   D L+ +WQ+PLD  +QE  + +T KG++TPTRVPQG  +A  +FQ T+  VL  L+ K   VW+DD+ ++A T +EL++ +   L +    G+     K+ LF  E+RWCG+I
Sbjct:  320 PGTDSFRQTNDYRPLNNVTEPIAGVMPSLEVALEHCKGKMFYAVFDFLKGFWQLPLDKSSQEYMSYMTDKGIFTPTRVPQGSTDAALHFQSTVEMVLGDLVNKSVIVWIDDLLVFADTAEELLEAIEATLTKLDEYGLILNPKKSALFLTEVRWCGRI 477          
BLAST of mRNA_H-paniculata_contig27405.7501.1 vs. uniprot
Match: A0A6A4E9W8_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4E9W8_9STRA)

HSP 1 Score: 125 bits (313), Expect = 5.000e-30
Identity = 63/158 (39.87%), Postives = 93/158 (58.86%), Query Frame = 1
Query:   46 PKKDTYRMVVDYRAVNNVIAPSAMPMPNLEETGRGMVGASVFCKLDLLQSYWQMPLDPQAQEIFTMVTTKGVYTPTRVPQGVLNATSYFQGTMGDVLAGLLGKVCEVWVDDIGIWAGTWQELMQRVRVVLERRQVRGIYAAAHKARLFRREMRWCGKI 519
            P  D++R   DYR +NNV  P A  MP+LE       G   +   D L+ +WQ+PLD  +QE  + +T KG++TPTRVPQG  +A  +FQ T+  VL  L+ K   VW+DD+ ++A T +EL++ +   L +    G+     K+ LF  E+RWCG+I
Sbjct:  561 PGTDSFRQTNDYRPLNNVTEPIAGVMPSLEVALEHCKGKMFYAVFDFLKGFWQLPLDKSSQEYMSYMTDKGIFTPTRVPQGNTDAALHFQSTVEMVLGDLVNKSVIVWIDDLLVFADTAEELLEAIEATLTKLDEYGLILNPKKSALFLSEVRWCGRI 718          
BLAST of mRNA_H-paniculata_contig27405.7501.1 vs. uniprot
Match: A0A2P4YJ51_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJ51_9STRA)

HSP 1 Score: 124 bits (311), Expect = 9.610e-30
Identity = 66/171 (38.60%), Postives = 97/171 (56.73%), Query Frame = 1
Query:   13 QARFGSVAMAV--PKKDTYRMVVDYRAVNNVIAPSAMPMPNLEETGRGMVGASVFCKLDLLQSYWQMPLDPQAQEIFTMVTTKGVYTPTRVPQGVLNATSYFQGTMGDVLAGLLGKVCEVWVDDIGIWAGTWQELMQRVRVVLERRQVRGIYAAAHKARLFRREMRWCGKI 519
            Q+R+   A+ V  P  D YR  VDYR +N +  P A  MP++E       G   +   D L+ +WQ+P    ++E  + +T KGV+TPTRVPQG  +A  +FQ T+  VL  L+GK   VW+DD+ ++A T  EL+  +  VL++    G      K  LFR E++WCG+I
Sbjct:  227 QSRWRCPALPVKKPNTDDYRQTVDYRPINAITEPIAGVMPSIEVALEHCRGKKYYALFDFLKGFWQLPFHENSREYLSYMTNKGVFTPTRVPQGSTDADLHFQSTVQMVLRELVGKCVIVWIDDLLVFAETQSELLDAIDAVLQKLDEYGFILNPKKCSLFRTEIQWCGRI 397          
BLAST of mRNA_H-paniculata_contig27405.7501.1 vs. uniprot
Match: A0A6A3GVC4_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3GVC4_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.140e-29
Identity = 60/152 (39.47%), Postives = 91/152 (59.87%), Query Frame = 1
Query:   64 RMVVDYRAVNNVIAPSAMPMPNLEETGRGMVGASVFCKLDLLQSYWQMPLDPQAQEIFTMVTTKGVYTPTRVPQGVLNATSYFQGTMGDVLAGLLGKVCEVWVDDIGIWAGTWQELMQRVRVVLERRQVRGIYAAAHKARLFRREMRWCGKI 519
            RM +D R+VN    P + PMP L+    G+ GA VF  LD  + YWQ+PL P +QE+++ VT +G+YTPTRVP G  +A +Y QG + ++   L+G     W+DDI  +A     L++ +  VL R +  G+   A K + F  E++WCG++
Sbjct:   69 RMTIDTRSVNERTEPMSWPMPVLDVVLGGLEGARVFFVLDWFRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGATDAVAYCQGVVDEIFGDLIGDGILAWLDDILGYAENESALLELLDKVLSRCEAYGLKLHAKKCQFFATEVKWCGRV 220          
BLAST of mRNA_H-paniculata_contig27405.7501.1 vs. uniprot
Match: A0A6A4AUS0_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4AUS0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.200e-29
Identity = 59/152 (38.82%), Postives = 90/152 (59.21%), Query Frame = 1
Query:   64 RMVVDYRAVNNVIAPSAMPMPNLEETGRGMVGASVFCKLDLLQSYWQMPLDPQAQEIFTMVTTKGVYTPTRVPQGVLNATSYFQGTMGDVLAGLLGKVCEVWVDDIGIWAGTWQELMQRVRVVLERRQVRGIYAAAHKARLFRREMRWCGKI 519
            RM +D R+VN    P + PMP L+     + GA VF  LD  + YWQ+PL P +QE+++ VT +G+YTPTRVP G  +A +Y QG + ++   L+G     W+DDI  +A     L++ +  VL R +  G+   A K + F  E++WCG++
Sbjct:  105 RMTIDTRSVNERTEPMSWPMPVLDVVLGELEGARVFFVLDWFRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGATDAVAYCQGVVDEIFGDLIGDGILAWLDDILGYAENESALLELLDKVLSRCEAYGLKLHAKKCQFFATEVKWCGRV 256          
BLAST of mRNA_H-paniculata_contig27405.7501.1 vs. uniprot
Match: A0A6A3KVD3_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KVD3_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.480e-29
Identity = 64/158 (40.51%), Postives = 89/158 (56.33%), Query Frame = 1
Query:   46 PKKDTYRMVVDYRAVNNVIAPSAMPMPNLEETGRGMVGASVFCKLDLLQSYWQMPLDPQAQEIFTMVTTKGVYTPTRVPQGVLNATSYFQGTMGDVLAGLLGKVCEVWVDDIGIWAGTWQELMQRVRVVLERRQVRGIYAAAHKARLFRREMRWCGKI 519
            P  D +R   DYR  N V  P A  MP+LE       G   +   D L+S+WQ+PLD   QE  + +T KGV+TPTRVPQG  +A  +FQ T+  V   L+ K   VW+DD+ ++A T +EL+  +  VL +    G+     K+ LF  E+RWCG+I
Sbjct:  622 PNIDEFRQTTDYRPFNAVTEPIAGVMPSLEVALEHCKGKMFYAMFDFLKSFWQLPLDESCQEFLSYMTDKGVFTPTRVPQGSTDAALHFQSTVEMVFGELVNKCVIVWIDDLLVFADTEEELVDAIEAVLTKLDGYGLKLNPKKSALFLTEVRWCGRI 779          
BLAST of mRNA_H-paniculata_contig27405.7501.1 vs. uniprot
Match: H3H656_PHYRM (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H656_PHYRM)

HSP 1 Score: 122 bits (306), Expect = 4.520e-29
Identity = 68/176 (38.64%), Postives = 99/176 (56.25%), Query Frame = 1
Query:   13 QARFGSVAMAVPKKDTY-------RMVVDYRAVNNVIAPSAMPMPNLEETGRGMVGASVFCKLDLLQSYWQMPLDPQAQEIFTMVTTKGVYTPTRVPQGVLNATSYFQGTMGDVLAGLLGKVCEVWVDDIGIWAGTWQELMQRVRVVLERRQVRGIYAAAHKARLFRREMRWCGKI 519
            ++R+ S    V KK+         RM +D R+VN    P   PMP LE     + GA VF  LD  + YWQ+PL P +QEI++ VT +G+YTPTRVP G  +A +Y QG + ++   LLG     W+DDI  +A     L++ +  VLER +  G+   A K + F  E++WCG++
Sbjct:  702 RSRWASAPRIVKKKEQADDPLADPRMTIDTRSVNERTEPMPWPMPVLEVVIGELEGAKVFFVLDWFRGYWQLPLHPDSQEIYSFVTHRGIYTPTRVPMGATDAVAYCQGVVEEIFGDLLGTCILAWLDDILGYAEDEASLLEVLDKVLERCEKFGLKLHAKKCQFFATEVKWCGRM 877          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27405.7501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7F6_9PHAE9.650e-4147.40Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE1.320e-4047.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3L091_9STRA8.450e-3138.15RNA-directed DNA polymerase n=6 Tax=Phytophthora T... [more]
A0A6A3GQ28_9STRA1.300e-3039.87Reverse transcriptase domain-containing protein (F... [more]
A0A6A4E9W8_9STRA5.000e-3039.87Reverse transcriptase domain-containing protein n=... [more]
A0A2P4YJ51_9STRA9.610e-3038.60Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A6A3GVC4_9STRA1.140e-2939.47Reverse transcriptase domain-containing protein n=... [more]
A0A6A4AUS0_9STRA3.200e-2938.82Reverse transcriptase domain-containing protein (F... [more]
A0A6A3KVD3_9STRA4.480e-2940.51Reverse transcriptase domain-containing protein n=... [more]
H3H656_PHYRM4.520e-2938.64Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27405contigH-paniculata_contig27405:570..1088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue2.3e-26
Seed eggNOG ortholog164328.Phyra85588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size519
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.558694-CDS-H-paniculata_contig27405:569..10881622929827.558694-CDS-H-paniculata_contig27405:569..1088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27405 570..1088 -
1691481028.8553617-CDS-H-paniculata_contig27405:569..10881691481028.8553617-CDS-H-paniculata_contig27405:569..1088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27405 570..1088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27405.7501.1prot_H-paniculata_contig27405.7501.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27405 570..1088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27405.7501.1

>prot_H-paniculata_contig27405.7501.1 ID=prot_H-paniculata_contig27405.7501.1|Name=mRNA_H-paniculata_contig27405.7501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
VRKPQARFGSVAMAVPKKDTYRMVVDYRAVNNVIAPSAMPMPNLEETGRG
MVGASVFCKLDLLQSYWQMPLDPQAQEIFTMVTTKGVYTPTRVPQGVLNA
TSYFQGTMGDVLAGLLGKVCEVWVDDIGIWAGTWQELMQRVRVVLERRQV
RGIYAAAHKARLFRREMRWCGKI
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mRNA from alignment at H-paniculata_contig27405:570..1088-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27405.7501.1 ID=mRNA_H-paniculata_contig27405.7501.1|Name=mRNA_H-paniculata_contig27405.7501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=519bp|location=Sequence derived from alignment at H-paniculata_contig27405:570..1088- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCGCAAACCCCAGGCAAGGTTCGGCAGCGTGGCGATGGCAGTGCCCAA GAAGGACACCTATCGAATGGTGGTCGACTACCGCGCAGTAAACAACGTGA TCGCACCCTCGGCGATGCCGATGCCAAACTTGGAGGAGACCGGGCGAGGC ATGGTGGGAGCCAGCGTGTTCTGCAAGCTGGATCTACTGCAGAGCTACTG GCAGATGCCCCTCGATCCTCAAGCGCAAGAGATCTTCACGATGGTCACGA CCAAGGGGGTATACACACCTACCAGAGTTCCTCAGGGAGTGCTAAATGCG ACTAGTTATTTCCAGGGAACGATGGGAGACGTGCTGGCAGGCTTGCTCGG AAAAGTCTGTGAAGTGTGGGTTGATGACATAGGAATATGGGCCGGTACCT GGCAGGAACTGATGCAGAGAGTGCGGGTGGTGCTGGAGCGGCGACAGGTA CGCGGTATTTATGCCGCGGCTCACAAAGCGAGGCTGTTTCGACGGGAGAT GCGCTGGTGCGGGAAAATT
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Coding sequence (CDS) from alignment at H-paniculata_contig27405:570..1088-

>mRNA_H-paniculata_contig27405.7501.1 ID=mRNA_H-paniculata_contig27405.7501.1|Name=mRNA_H-paniculata_contig27405.7501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig27405:570..1088- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCGCAAACCCCAGGCAAGGTTCGGCAGCGTGGCGATGGCAGTGCCCAA
GAAGGACACCTATCGAATGGTGGTCGACTACCGCGCAGTAAACAACGTGA
TCGCACCCTCGGCGATGCCGATGCCAAACTTGGAGGAGACCGGGCGAGGC
ATGGTGGGAGCCAGCGTGTTCTGCAAGCTGGATCTACTGCAGAGCTACTG
GCAGATGCCCCTCGATCCTCAAGCGCAAGAGATCTTCACGATGGTCACGA
CCAAGGGGGTATACACACCTACCAGAGTTCCTCAGGGAGTGCTAAATGCG
ACTAGTTATTTCCAGGGAACGATGGGAGACGTGCTGGCAGGCTTGCTCGG
AAAAGTCTGTGAAGTGTGGGTTGATGACATAGGAATATGGGCCGGTACCT
GGCAGGAACTGATGCAGAGAGTGCGGGTGGTGCTGGAGCGGCGACAGGTA
CGCGGTATTTATGCCGCGGCTCACAAAGCGAGGCTGTTTCGACGGGAGAT
GCGCTGGTGCGGGAAAATTGTTCGCAAACCCCAGGCAAGGTTCGGCAGCG
TGGCGATGGCAGTGCCCAAGAAGGACACCTATCGAATGGTGGTCGACTAC
CGCGCAGTAAACAACGTGATCGCACCCTCGGCGATGCCGATGCCAAACTT
GGAGGAGACCGGGCGAGGCATGGTGGGAGCCAGCGTGTTCTGCAAGCTGG
ATCTACTGCAGAGCTACTGGCAGATGCCCCTCGATCCTCAAGCGCAAGAG
ATCTTCACGATGGTCACGACCAAGGGGGTATACACACCTACCAGAGTTCC
TCAGGGAGTGCTAAATGCGACTAGTTATTTCCAGGGAACGATGGGAGACG
TGCTGGCAGGCTTGCTCGGAAAAGTCTGTGAAGTGTGGGTTGATGACATA
GGAATATGGGCCGGTACCTGGCAGGAACTGATGCAGAGAGTGCGGGTGGT
GCTGGAGCGGCGACAGGTACGCGGTATTTATGCCGCGGCTCACAAAGCGA
GGCTGTTTCGACGGGAGATGCGCTGGTGCGGGAAAATT
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