mRNA_H-paniculata_contig27401.7500.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27401.7500.1
Unique NamemRNA_H-paniculata_contig27401.7500.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27401.7500.1 vs. uniprot
Match: D7FK55_ECTSI (D27-like_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK55_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 4.380e-14
Identity = 40/69 (57.97%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:  427 MGGAYSYEDYVALATKLQAGPPERQRKVVRGVLLSIFPAWFPAFYRTLFPPSK----VRLIDCVDSFGW 621
            MGG Y+YEDYVALAT LQAG PERQR+VVRG            FYR LFPPSK    V    C   FGW
Sbjct:    1 MGGGYTYEDYVALATGLQAGAPERQREVVRGXXXXXXXXXXXXFYRMLFPPSKFSAEVNAFMCPPLFGW 69
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BLAST of mRNA_H-paniculata_contig27401.7500.1 vs. uniprot
Match: A0A6H5L107_9PHAE (D27-like_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L107_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.410e-11
Identity = 38/65 (58.46%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  439 YSYEDYVALATKLQAGPPERQRKVVRGVLLSIFPAWFPAFYRTLFPPSK----VRLIDCVDSFGW 621
            Y+YEDYVALAT LQAG PERQR+VVRGV           FYR LFPPSK    V    C   FGW
Sbjct:  357 YTYEDYVALATGLQAGAPERQREVVRGVXXXXXXXXXXXFYRMLFPPSKFSAEVNAFMCPPLFGW 421
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27401.7500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK55_ECTSI4.380e-1457.97D27-like_C domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5L107_9PHAE1.410e-1158.46D27-like_C domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27401contigH-paniculata_contig27401:243..1079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue2.3e-12
Seed eggNOG ortholog2880.D7FK55
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4033)
EggNOG OGs2CN5C@1,2QTYT@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size621
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.0455358-CDS-H-paniculata_contig27401:242..4471622929827.0455358-CDS-H-paniculata_contig27401:242..447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27401 243..447 -
1691481028.8305063-CDS-H-paniculata_contig27401:242..4471691481028.8305063-CDS-H-paniculata_contig27401:242..447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27401 243..447 -
1622929827.4910383-CDS-H-paniculata_contig27401:663..10791622929827.4910383-CDS-H-paniculata_contig27401:663..1079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27401 664..1079 -
1691481028.8434503-CDS-H-paniculata_contig27401:663..10791691481028.8434503-CDS-H-paniculata_contig27401:663..1079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27401 664..1079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27401.7500.1prot_H-paniculata_contig27401.7500.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27401 243..1079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27401.7500.1

>prot_H-paniculata_contig27401.7500.1 ID=prot_H-paniculata_contig27401.7500.1|Name=mRNA_H-paniculata_contig27401.7500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
KPESPFAVPDNIYRDSFLDSLWINLFASRMSAAVKAESFASSSSSSSSSS
SSSSSSSSAAAAAAAPTTSQLQRDHWPAAAAAAAAAVEKRRAAAAAAATG
GEEKGSGAEVTGTLRLAGGGKATEPPELADDDESFRGQHGGGMGGAYSYE
DYVALATKLQAGPPERQRKVVRGVLLSIFPAWFPAFYRTLFPPSKVRLID
CVDSFGW
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mRNA from alignment at H-paniculata_contig27401:243..1079-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27401.7500.1 ID=mRNA_H-paniculata_contig27401.7500.1|Name=mRNA_H-paniculata_contig27401.7500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=837bp|location=Sequence derived from alignment at H-paniculata_contig27401:243..1079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCCGGAAAGCCCTTTCGCTGTCCCGGACAACATCTATCGCGACTCATT
TTTGGATTCCTTGTGGATAAACCTTTTCGCCAGTCGTATGTCGGCCGCGG
TCAAGGCAGAGTCCTTTGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCGCCCCCAC
CACGTCTCAGCTGCAGAGAGATCACTGGCCAGCGGCTGCGGCTGCGGCTG
CCGCTGCGGTGGAGAAGCGGCGGGCGGCGGCGGCGGCGGCGGCGACTGGG
GGCGAGGAAAAGGGAAGTGGCGCTGAAGTAACGGGAACGCTGCGGCTGGC
GGGTGGAGGAAAAGCAACAGAACCACCAGAACTTGCCGATGACGATGAGA
GCTTCAGGGGACAGCAGTTTATTGGTGCCCTGTTTGGGGCTCATGTTTCT
TCTGCGCCAACTCTTGGTTCGGAAAAGATAATCCTCGAGCCGCAGACGGC
ACCTACTGCTACTGTTAACGTTGGCGGGATACACATGCCCTCGGGTGAAC
AAGCTTGTGTAGTCAATAAGCGCTCCGGTAGGAGCACTGATGATGATCCG
GTGGGGGCAATTGGAGCTGTACATATTGAGAGTGGGGGTGGGATGGGCGG
CGCGTATTCATACGAGGACTACGTGGCCCTGGCGACGAAGCTGCAGGCGG
GGCCACCTGAGCGACAGAGGAAGGTGGTGAGGGGTGTCTTGCTCTCCATC
TTTCCCGCGTGGTTTCCGGCGTTTTATCGAACGCTCTTCCCACCAAGCAA
GGTGCGTTTGATTGATTGTGTCGATTCATTCGGCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig27401:243..1079-

>mRNA_H-paniculata_contig27401.7500.1 ID=mRNA_H-paniculata_contig27401.7500.1|Name=mRNA_H-paniculata_contig27401.7500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig27401:243..1079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCCGGAAAGCCCTTTCGCTGTCCCGGACAACATCTATCGCGACTCATT
TTTGGATTCCTTGTGGATAAACCTTTTCGCCAGTCGTATGTCGGCCGCGG
TCAAGGCAGAGTCCTTTGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCGCCCCCAC
CACGTCTCAGCTGCAGAGAGATCACTGGCCAGCGGCTGCGGCTGCGGCTG
CCGCTGCGGTGGAGAAGCGGCGGGCGGCGGCGGCGGCGGCGGCGACTGGG
GGCGAGGAAAAGGGAAGTGGCGCTGAAGTAACGGGAACGCTGCGGCTGGC
GGGTGGAGGAAAAGCAACAGAACCACCAGAACTTGCCGATGACGATGAGA
GCTTCAGGGGACAGCAAAGCCGGAAAGCCCTTTCGCTGTCCCGGACAACA
TCTATCGCGACTCATTTTTGGATTCCTTGTGGATAAACCTTTTCGCCAGT
CGTATGTCGGCCGCGGTCAAGGCAGAGTCCTTTGCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCG
CCGCCGCCGCCCCCACCACGTCTCAGCTGCAGAGAGATCACTGGCCAGCG
GCTGCGGCTGCGGCTGCCGCTGCGGTGGAGAAGCGGCGGGCGGCGGCGGC
GGCGGCGGCGACTGGGGGCGAGGAAAAGGGAAGTGGCGCTGAAGTAACGG
GAACGCTGCGGCTGGCGGGTGGAGGAAAAGCAACAGAACCACCAGAACTT
GCCGATGACGATGAGAGCTTCAGGGGACAGCATGGGGGTGGGATGGGCGG
CGCGTATTCATACGAGGACTACGTGGCCCTGGCGACGAAGCTGCAGGCGG
GGCCACCTGAGCGACAGAGGAAGGTGGTGAGGGGTGTCTTGCTCTCCATC
TTTCCCGCGTGGTTTCCGGCGTTTTATCGAACGCTCTTCCCACCAAGCAA
GGTGCGTTTGATTGATTGTGTCGATTCATTCGGCTGGTGGGGGTGGGATG
GGCGGCGCGTATTCATACGAGGACTACGTGGCCCTGGCGACGAAGCTGCA
GGCGGGGCCACCTGAGCGACAGAGGAAGGTGGTGAGGGGTGTCTTGCTCT
CCATCTTTCCCGCGTGGTTTCCGGCGTTTTATCGAACGCTCTTCCCACCA
AGCAAGGTGCGTTTGATTGATTGTGTCGATTCATTCGGCTGG
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