mRNA_H-paniculata_contig27383.7495.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27383.7495.1
Unique NamemRNA_H-paniculata_contig27383.7495.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27383.7495.1 vs. uniprot
Match: D7G7M4_ECTSI (TTC5_OB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M4_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.580e-31
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 QESLRLAKEAVKQDVKCGESWYVVGNAYVASFFRDSRAFKDLDRALQAYSQAES-NGHTQNPDLFFNRAQVLRYREDYPEAVEAYR 255
            +ESLRLAKEAV  DV+CG SWYV+GN YVASFF  SR  KDLDRALQAY +AE+  G   NPDLFFNRAQV +YREDYPE++  +R
Sbjct:  120 EESLRLAKEAVTLDVECGYSWYVLGNGYVASFFGSSRGIKDLDRALQAYKKAEAYGGEKGNPDLFFNRAQVFQYREDYPESIRDFR 205
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BLAST of mRNA_H-paniculata_contig27383.7495.1 vs. uniprot
Match: A0A6H5LCT9_9PHAE (TTC5_OB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCT9_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.660e-31
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 QESLRLAKEAVKQDVKCGESWYVVGNAYVASFFRDSRAFKDLDRALQAYSQAESNGHTQ-NPDLFFNRAQVLRYREDYPEAVEAYR 255
            QESLR AKEAV  D+ CG+SWYV+GN YVASFFR SR  KDLDRALQAY +AE+ G  + NPDLFFNRAQV +YREDYPE++   R
Sbjct:  262 QESLRFAKEAVTLDIGCGDSWYVLGNGYVASFFRSSRGIKDLDRALQAYKKAEAYGGEEGNPDLFFNRAQVFQYREDYPESIRDLR 347
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BLAST of mRNA_H-paniculata_contig27383.7495.1 vs. uniprot
Match: T0S5G9_SAPDV (TTC5_OB domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S5G9_SAPDV)

HSP 1 Score: 105 bits (261), Expect = 7.880e-25
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:    7 SLRLAKEAVKQDVKCGESWYVVGNAYVASFFRDSRAFKDLDRALQAYSQAESNGHTQNPDLFFNRAQVLRYREDYPEAVEAY 252
            SL+ AK+AV  D+  GESWYV+GNAY+A FF DS +  DLDR+L AY++AE  G  QNPDL FNRA V RY+EDY EAV +Y
Sbjct:  159 SLQRAKQAVSLDLTDGESWYVLGNAYLALFFGDSHSTVDLDRSLAAYTRAEKAGAGQNPDLHFNRANVQRYKEDYAEAVASY 240
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BLAST of mRNA_H-paniculata_contig27383.7495.1 vs. uniprot
Match: A0A067CIK2_SAPPC (TTC5_OB domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CIK2_SAPPC)

HSP 1 Score: 103 bits (257), Expect = 2.560e-24
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:    7 SLRLAKEAVKQDVKCGESWYVVGNAYVASFFRDSRAFKDLDRALQAYSQAESNGHTQNPDLFFNRAQVLRYREDYPEAVEAY 252
            SL+ AK+AV  D+  GESWYV+GNAY+A FF DS +  DLDR+L AY++AE  G  QNPDL FNRA V RY+EDY EAV +Y
Sbjct:  159 SLQHAKQAVGLDLTDGESWYVLGNAYLALFFGDSHSTVDLDRSLAAYTRAEKAGAGQNPDLHFNRANVHRYKEDYAEAVASY 240
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BLAST of mRNA_H-paniculata_contig27383.7495.1 vs. uniprot
Match: A0A1V9YGG6_9STRA (TTC5_OB domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGG6_9STRA)

HSP 1 Score: 102 bits (254), Expect = 7.670e-24
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:    7 SLRLAKEAVKQDVKCGESWYVVGNAYVASFFRDSRAFKDLDRALQAYSQAESNGHTQNPDLFFNRAQVLRYREDYPEAVEAY 252
            SL+ AK+AV  D+  GESWYV+GNAY+A FF D+ +  DLDR+L AY++AE  G  +NPDL FNRA V RY+EDY EAV +Y
Sbjct:  157 SLQHAKQAVSLDLADGESWYVLGNAYLALFFGDTHSTIDLDRSLAAYTRAEKAGAGRNPDLHFNRANVFRYKEDYAEAVTSY 238
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BLAST of mRNA_H-paniculata_contig27383.7495.1 vs. uniprot
Match: W4H469_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H469_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 9.570e-23
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    7 SLRLAKEAVKQDVKCGESWYVVGNAYVASFFRDSRAFKDLDRALQAYSQAESNGHTQNPDLFFNRAQVLRYREDYPEAVEAY 252
            S+  AK+A+  D++ GESWYV+GNAY+A FF  S +  DLDR+L AY++AE+ G   NPDL FNRA V RY+EDY  AV+++
Sbjct:  151 SIVHAKQALNMDIQDGESWYVMGNAYLALFFASSHSTVDLDRSLAAYARAEAGGAANNPDLHFNRANVHRYKEDYALAVQSF 232
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BLAST of mRNA_H-paniculata_contig27383.7495.1 vs. uniprot
Match: A0A6U4GNL1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4GNL1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.430e-22
Identity = 49/84 (58.33%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    4 ESLRLAKEAVKQDVKCGESWYVVGNAYVASFFRDSRAFKDLDRALQAYSQAESNGHTQNPDLFFNRAQVLRYREDYPEAVEAYR 255
            ES+  A EAV  DV    SWY++GNAY   FF+ S    DL RALQAYS+A++NG   NPDL FNR  VLRYREDY EAV  Y+
Sbjct:  200 ESVTKAHEAVALDVSDHHSWYILGNAYCGVFFQVSHRLSDLARALQAYSRADANGGENNPDLHFNRGNVLRYREDYHEAVSNYK 283
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BLAST of mRNA_H-paniculata_contig27383.7495.1 vs. uniprot
Match: A0A0V0QDN1_PSEPJ (TTC5_OB domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QDN1_PSEPJ)

HSP 1 Score: 98.2 bits (243), Expect = 2.870e-22
Identity = 44/84 (52.38%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    1 QESLRLAKEAVKQDVKCGESWYVVGNAYVASFFRDSRAFKDLDRALQAYSQAESNGHTQNPDLFFNRAQVLRYREDYPEAVEAY 252
            ++S+ LA EAVK D+K GESWYV+GNAY+++FF + +   +L ++LQAY QAE N    NPDLF+NR  + +Y EDY +A+E Y
Sbjct:  150 EKSIELANEAVKLDLKDGESWYVLGNAYLSNFFVNLKTIDELKKSLQAYIQAEKNLTKPNPDLFYNRGTIFQYLEDYKKAIEQY 233
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BLAST of mRNA_H-paniculata_contig27383.7495.1 vs. uniprot
Match: W4H3U9_9STRA (TTC5_OB domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H3U9_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.710e-22
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    7 SLRLAKEAVKQDVKCGESWYVVGNAYVASFFRDSRAFKDLDRALQAYSQAESNGHTQNPDLFFNRAQVLRYREDYPEAVEAY 252
            S+  AK+A+  D++ GESWYV+GNAY+A FF  S +  DLDR+L AY++AE+ G   NPDL FNRA V RY+EDY  AV+++
Sbjct:  152 SIVHAKQALNMDIQDGESWYVMGNAYLALFFASSHSTVDLDRSLAAYARAEAGGAANNPDLHFNRANVHRYKEDYALAVQSF 233
[Close]
BLAST of mRNA_H-paniculata_contig27383.7495.1 vs. uniprot
Match: W4H5Y4_9STRA (TTC5_OB domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H5Y4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.830e-22
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    7 SLRLAKEAVKQDVKCGESWYVVGNAYVASFFRDSRAFKDLDRALQAYSQAESNGHTQNPDLFFNRAQVLRYREDYPEAVEAY 252
            S+  AK+A+  D++ GESWYV+GNAY+A FF  S +  DLDR+L AY++AE+ G   NPDL FNRA V RY+EDY  AV+++
Sbjct:  156 SIVHAKQALNMDIQDGESWYVMGNAYLALFFASSHSTVDLDRSLAAYARAEAGGAANNPDLHFNRANVHRYKEDYALAVQSF 237
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27383.7495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7M4_ECTSI1.580e-3169.77TTC5_OB domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5LCT9_9PHAE1.660e-3169.77TTC5_OB domain-containing protein n=1 Tax=Ectocarp... [more]
T0S5G9_SAPDV7.880e-2562.20TTC5_OB domain-containing protein n=1 Tax=Saproleg... [more]
A0A067CIK2_SAPPC2.560e-2462.20TTC5_OB domain-containing protein n=1 Tax=Saproleg... [more]
A0A1V9YGG6_9STRA7.670e-2459.76TTC5_OB domain-containing protein n=1 Tax=Achlya h... [more]
W4H469_9STRA9.570e-2354.88Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6U4GNL1_9STRA1.430e-2258.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0V0QDN1_PSEPJ2.870e-2252.38TTC5_OB domain-containing protein n=1 Tax=Pseudoco... [more]
W4H3U9_9STRA3.710e-2254.88TTC5_OB domain-containing protein n=2 Tax=Aphanomy... [more]
W4H5Y4_9STRA3.830e-2254.88TTC5_OB domain-containing protein n=2 Tax=Aphanomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27383contigH-paniculata_contig27383:100..1894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue1.5e-26
Seed eggNOG ortholog2880.D7G7M4
Preferred nameTTC5
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0019219,GO:0019222,GO:0023051,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0080090,GO:0097159,GO:1901363,GO:1901796,GO:1902531,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.chromatin binding
EggNOG OGs2C216@1,2QQ6C@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-22_001810.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929826.0825844-CDS-H-paniculata_contig27383:99..2551622929826.0825844-CDS-H-paniculata_contig27383:99..255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27383 100..255 +
1691481028.3329403-CDS-H-paniculata_contig27383:99..2551691481028.3329403-CDS-H-paniculata_contig27383:99..255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27383 100..255 +
1622929826.098746-CDS-H-paniculata_contig27383:1789..18941622929826.098746-CDS-H-paniculata_contig27383:1789..1894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27383 1790..1894 +
1691481028.3484113-CDS-H-paniculata_contig27383:1789..18941691481028.3484113-CDS-H-paniculata_contig27383:1789..1894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27383 1790..1894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27383.7495.1prot_H-paniculata_contig27383.7495.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27383 100..1894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27383.7495.1

>prot_H-paniculata_contig27383.7495.1 ID=prot_H-paniculata_contig27383.7495.1|Name=mRNA_H-paniculata_contig27383.7495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
QESLRLAKEAVKQDVKCGESWYVVGNAYVASFFRDSRAFKDLDRALQAYS
QAESNGHTQNPDLFFNRAQVLRYREDYPEAVEAYRY*
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mRNA from alignment at H-paniculata_contig27383:100..1894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27383.7495.1 ID=mRNA_H-paniculata_contig27383.7495.1|Name=mRNA_H-paniculata_contig27383.7495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1795bp|location=Sequence derived from alignment at H-paniculata_contig27383:100..1894+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAAAGTCTGCGATTGGCCAAGGAAGCAGTGAAGCAAGACGTCAAGTG
CGGGGAGTCTTGGTACGTGGTAGGCAACGCCTACGTGGCGTCGTTCTTCA
GAGATTCGAGGGCGTTCAAGGATCTCGACCGCGCACTGCAGGCGTATTCT
CAAGCGGTGAGGAGGATCCCAGACCCTTTCCTGAATAAACCTGACCGACA
AATTCCAACAACCTTCCGTATGATATAATAGGCTAAGGTGATGGTCATTT
CGGAATTCTTTTTCAAGTCTCAACTCGACTAGTTTCAGAAGTACGGAATC
TAAAATACTATTTTTCCAACTTGAATTAGCCGCAAAATAGTACTCTCAGT
TCAAGTAAGAGTAGAAATAGCCGTGACCTGTTCACCTACTTAATTGCGAC
TGTCTTGGAAAATGACTATTAGTAACAGAAATCGCTCTGATAGGAATAAA
TTTTCGTGTTTTTTCCCGAGGGCACGTGGTCAACGTTCTAACAACGACGG
CATGCACAAGATGACTACGTCCCACTACCCCGTACTCCTTACACCTAGCC
CGCCCCTCGAGGGTCAAATCGAATTCCGGTAGCGGTTAAAATCGCCCAGA
CGCTGCGCCGCTGCGCGGCGTAGACGATGGCCGTGAAGCCAGGTTTGGCC
AGGTTCATCAAAGAGTCGGGCGGTTACGGACACCGCAGTAAAACCGTGTG
CTGCAAAAACCGTGAACTTCGACAGATACATTTTATGCTTGATCAATATA
TGGGTTCCGTCTCGTCTCGTGACCTCACGAAGCGGGACGTGATAAGGGAT
TCGTGGCTCTCGGTCTCAACAACCACCTACCTGATAAGGCAGGCGCGCGT
GGGGGGGGGGGGGTGGATTCGGGTGATGTTGAATCTTGAATAGGCCGTTG
TGCCACTTTGGGATTTTTGAGGTTTTTGCCTTACTTTGCTCTCTCTATCC
TCACGTTGGTGTGCGGTGAGGAGAGCGGCGTATACTCCCAACGAGTCATA
TTTCCTTGAAGGTGTTTTTTTAGCTTTTTTTTTCTGAAATCACTGTCGAT
ATAATGAAATCAATGTCGATACCCTGAAATTACTGTCGATACCATGAAAT
CACTGTCGATATCGTGAAATCACTGTTGATATCATGAAATCACTGTCGAT
ATAATGAAATCAATGTCGATATCGTGAAATCACTGTCGATATCATGAAAT
CACTGTCGATATAATGAAATCACTGTCGATATCATGAAATCACTGTCGAT
ATCATGAAATCACTGTCGATATCATGAAATCACTGTCACTTTGGTGGTGT
AGTGTGTTGATAACAGTGGCAAAGACGCAGATTTTGGAGCTGTCCGCCTC
TGTGTGGAGAAACATGACATTTCCCTTGGCATTATGTCTCCTGTGCGCGG
TTTCTGTGGGTGTCTCCTGTGTGTAGCCTATATTTGTCTGTGTCCGTGTG
TTCTCTACCTCTGTCTTCGTCTCTCCCTCTGGTTTACATTCTGTCTCTTG
TGTCTATCTCTGTGCCTGTCTCTGAATATATCCATCTCTATCCTTGCCTC
TCTTTCTCTCGCTGTTTGCCGCTCTCTCTGTCTGTCCGTCTCGCTGTCCG
CTGTCCGCTGTCCGTCTCTCTGTGTTTCTCTGTCTGTGTATGTCCCTCTG
TCTGCTTGTCTGCATATTTGCCCCTCTCTCTCCCTCGCAGGAATCGAACG
GCCACACCCAAAACCCAGATCTATTCTTCAACAGAGCGCAAGTATTGCGC
TACAGAGAAGACTACCCTGAAGCTGTTGAGGCCTACAGGTATTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig27383:100..1894+

>mRNA_H-paniculata_contig27383.7495.1 ID=mRNA_H-paniculata_contig27383.7495.1|Name=mRNA_H-paniculata_contig27383.7495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig27383:100..1894+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAAAGTCTGCGATTGGCCAAGGAAGCAGTGAAGCAAGACGTCAAGTG
CGGGGAGTCTTGGTACGTGGTAGGCAACGCCTACGTGGCGTCGTTCTTCA
GAGATTCGAGGGCGTTCAAGGATCTCGACCGCGCACTGCAGGCGTATTCT
CAAGCGCAGGAAAGTCTGCGATTGGCCAAGGAAGCAGTGAAGCAAGACGT
CAAGTGCGGGGAGTCTTGGTACGTGGTAGGCAACGCCTACGTGGCGTCGT
TCTTCAGAGATTCGAGGGCGTTCAAGGATCTCGACCGCGCACTGCAGGCG
TATTCTCAAGCGGAATCGAACGGCCACACCCAAAACCCAGATCTATTCTT
CAACAGAGCGCAAGTATTGCGCTACAGAGAAGACTACCCTGAAGCTGTTG
AGGCCTACAGGTATTGAGAATCGAACGGCCACACCCAAAACCCAGATCTA
TTCTTCAACAGAGCGCAAGTATTGCGCTACAGAGAAGACTACCCTGAAGC
TGTTGAGGCCTACAGGTATTGA
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