mRNA_H-paniculata_contig27359.7490.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27359.7490.1
Unique NamemRNA_H-paniculata_contig27359.7490.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27359.7490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27359contigH-paniculata_contig27359:585..2943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size356
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27359.7490.1prot_H-paniculata_contig27359.7490.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27359 585..2941 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929825.488033-CDS-H-paniculata_contig27359:584..6331622929825.488033-CDS-H-paniculata_contig27359:584..633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27359 585..633 +
1691481028.1103604-CDS-H-paniculata_contig27359:584..6331691481028.1103604-CDS-H-paniculata_contig27359:584..633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27359 585..633 +
1622929825.5021615-CDS-H-paniculata_contig27359:1096..12511622929825.5021615-CDS-H-paniculata_contig27359:1096..1251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27359 1097..1251 +
1691481028.1221714-CDS-H-paniculata_contig27359:1096..12511691481028.1221714-CDS-H-paniculata_contig27359:1096..1251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27359 1097..1251 +
1622929825.5181434-CDS-H-paniculata_contig27359:2791..29411622929825.5181434-CDS-H-paniculata_contig27359:2791..2941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27359 2792..2941 +
1691481028.1361403-CDS-H-paniculata_contig27359:2791..29411691481028.1361403-CDS-H-paniculata_contig27359:2791..2941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27359 2792..2941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27359.7490.1

>prot_H-paniculata_contig27359.7490.1 ID=prot_H-paniculata_contig27359.7490.1|Name=mRNA_H-paniculata_contig27359.7490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
QTNQLDKARNHQRKHTVGTEGGQNSGHASNGPQEPSLSQLSQDTQGSDMD
LDNTSTTTGHDVRLSQSQDDSSYGDADGLSTDRDTSEVESHGPASSNSNT
AQNHCIASSREREKVKTT
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mRNA from alignment at H-paniculata_contig27359:585..2943+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27359.7490.1 ID=mRNA_H-paniculata_contig27359.7490.1|Name=mRNA_H-paniculata_contig27359.7490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2359bp|location=Sequence derived from alignment at H-paniculata_contig27359:585..2943+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACGAATCAGCTTGACAAGGCCAGAAATCACCAGAGGAAGCACACGGG
TGAGTTACAATACTATTTGAGGGTCTCATCGATCTTGTACACATGTACCT
GTAGTTCTACATTTTTGTGTCTATTGCTAGTAGTAGAGTATGACCATAGT
TACGCTCGTGCATTCATACCCCAGTACCTTGCTCTCGACCTACGTACAAC
ATCCCGTTGCGTTAGCATAAAGATTCTTTTTACACAATTTTCTGGAGTAT
AGAATTGAAAAAGCTATTCCAGAATAACAATATCAGACGGAGATATAGGA
TGATGGAGGAAACACTGGCACAGAGAGACTCCCAGATAATAAGCGTCGCT
CTCGTTGTCATGGTCCACCAGTGATGGTAATTCCTTGCAAAAGTTCTCAC
TGAGTTGTTGTGGTACTGATGATAACGATGATGATATCCCCTGGAGTACG
ATAATTGTGGCAATATATCACCATCAACCGACGTTACTTGACATGTGTAA
CGTGACATGCAGTCGGAACAGAGGGCGGGCAAAACTCCGGGCACGCCTCC
AACGGCCCGCAGGAGCCTTCTCTGTCCCAGCTGTCCCAAGACACACAGGG
GTCGGATATGGACTTGGACAATACTAGCACCACCACGGGACACGATGTGC
GCCTGAGCCAATCGCAGGTGAAATATATATGATGGACACGTTACACGACA
CGTTATGCGACACGTTATGCGACACGTTACACGACACAGTTAATGAGAAA
GAAAACGAACGTTACGAATGAAGAAGTTCGGACGCAATTTTTTTACTCGA
GAAATTTGCTTGAACTCATGACTTTTACGGAAACGATCACTTTTTCTATT
TATAGAAGCCCAACGACTATTTACTAGTTACGATATCTATCCATCTATCG
ATCAGTCTTGTTGTCGTGCTTTGACTGTCATGATCTTTGGCGGGCTGCCT
CCTGCTGTTTTCGCAAGTATGACGCATAACAGGATGCCACACACACAGCA
GCTCTCGCTCGCTACGGGACTCTCGGGAGATACTGGTGTTGCCGTAGTCG
CAGTATTACCGCGCAGATATGGTGCTCCGGCATGTACTACGGTACCTCCC
TGTCTTGCCCCTTTCGTCGCCGTGCGCGGCTCTGCTGTATCGTGCTGTTT
GCGCTGTCCAGCTGGGTGCCACCGCTTGATGTAACCAATTTGTGTATAGC
CTGCTGCCAGTTGTACGGCCTCCACATAAAGCACGCACCGCGGTCTGTTC
ATACCGATGAGGACGCACGATCGAGTCAGTGCGTATAGCGGGTGGACCGT
GGGGGTGTATTAGTACTGTATATTGTGCGCATCCTGATCGTTGTAGAGAT
TATCGTTGGGGTAGTGTTAGGTTAGTCCTGGTGGTGACACTCTCGTAGGG
TTACTTCCCTCCTGATCTCGCGAGGTATTTTACCCAGTATGCGTTAGTAT
CGCCAGTCATATGTAAGAAAATTATGAAGCGCCTCCAAGCACCCTCGCTG
TTGGAATATAACGAAACTAACCGCGGAGACAATCCATCATGTAGTACACA
CCAGGGCCTTCTCAGACCTATTGATACCCGCCGTAGATAGCATTACAAGT
TCCTTCCGTCCGTATAAACGGAAGAAAGGGGAAAGCAGAAGCTCTATTAT
ACTCACATGCGGAATAAACAAACAGAACATGGTAAAACTATTGTTTAGTG
AACAGTAAGCTGGACAATAATTTATTTTCTGATCTGATCTGATCTGTCGC
GCTTGTGTGGCAAGCCAAAGAAGACCGTCTTCAGATCCCCGTTCCTCCTT
CTCAGGCCTTTACCGTACCCTTTACGCTTTTAACGAGCACGCTATAACAA
TTTACAGAGGTGGTGGCAATGGTATTATGATCGTTGATATATTCGGAACA
TTTTTTCAGTCGGTACTCAAGCGAATTGATAGGCGACGGAGTTATGAATG
TGAGTGAAATTCTGGTCGTGAATAATGGATTTTGCCTTATTACGGCTTGT
TTTCCTTATCCCCCATGCTACTGAATATATATATATATATACATACTCTC
CTAAAAAAGTATTTGTGGAGGAGGTGGTTCTAAAAAACGTCTGATTGTTG
TTGATGGATTATGACACTTGGTAAAAGTGTGCACTCTCAAGTACCGTATC
CTCATCGTGTACATTCGAATCTTGATATGGTGTTTTTTTTTTGTTTTTTT
CTGACAGGACGACTCGAGCTATGGGGACGCGGATGGCCTGTCTACCGATC
GCGATACATCGGAGGTGGAAAGCCACGGTCCTGCCAGTAGTAACTCGAAC
ACTGCTCAAAATCATTGTATCGCTAGCTCTAGGGAAAGAGAGAAAGTAAA
GACTACGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig27359:585..2943+

>mRNA_H-paniculata_contig27359.7490.1 ID=mRNA_H-paniculata_contig27359.7490.1|Name=mRNA_H-paniculata_contig27359.7490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig27359:585..2943+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACGAATCAGCTTGACAAGGCCAGAAATCACCAGAGGAAGCACACGGC
AGACGAATCAGCTTGACAAGGCCAGAAATCACCAGAGGAAGCACACGGTC
GGAACAGAGGGCGGGCAAAACTCCGGGCACGCCTCCAACGGCCCGCAGGA
GCCTTCTCTGTCCCAGCTGTCCCAAGACACACAGGGGTCGGATATGGACT
TGGACAATACTAGCACCACCACGGGACACGATGTGCGCCTGAGCCAATCG
CAGTCGGAACAGAGGGCGGGCAAAACTCCGGGCACGCCTCCAACGGCCCG
CAGGAGCCTTCTCTGTCCCAGCTGTCCCAAGACACACAGGGGTCGGATAT
GGACTTGGACAATACTAGCACCACCACGGGACACGATGTGCGCCTGAGCC
AATCGCAGGACGACTCGAGCTATGGGGACGCGGATGGCCTGTCTACCGAT
CGCGATACATCGGAGGTGGAAAGCCACGGTCCTGCCAGTAGTAACTCGAA
CACTGCTCAAAATCATTGTATCGCTAGCTCTAGGGAAAGAGAGAAAGTAA
AGACTACGGACGACTCGAGCTATGGGGACGCGGATGGCCTGTCTACCGAT
CGCGATACATCGGAGGTGGAAAGCCACGGTCCTGCCAGTAGTAACTCGAA
CACTGCTCAAAATCATTGTATCGCTAGCTCTAGGGAAAGAGAGAAAGTAA
AGACTACG
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