mRNA_H-paniculata_contig27358.7489.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27358.7489.1
Unique NamemRNA_H-paniculata_contig27358.7489.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27358.7489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27358contigH-paniculata_contig27358:554..2144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size619
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27358.7489.1prot_H-paniculata_contig27358.7489.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27358 706..2073 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929825.3949773-UTR-H-paniculata_contig27358:553..7051622929825.3949773-UTR-H-paniculata_contig27358:553..705Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27358 554..705 +
1691481028.0656672-UTR-H-paniculata_contig27358:553..7051691481028.0656672-UTR-H-paniculata_contig27358:553..705Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27358 554..705 +
1622929825.438994-UTR-H-paniculata_contig27358:2073..21441622929825.438994-UTR-H-paniculata_contig27358:2073..2144Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27358 2074..2144 +
1691481028.0999713-UTR-H-paniculata_contig27358:2073..21441691481028.0999713-UTR-H-paniculata_contig27358:2073..2144Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27358 2074..2144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929825.4074187-CDS-H-paniculata_contig27358:705..10501622929825.4074187-CDS-H-paniculata_contig27358:705..1050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27358 706..1050 +
1691481028.0800588-CDS-H-paniculata_contig27358:705..10501691481028.0800588-CDS-H-paniculata_contig27358:705..1050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27358 706..1050 +
1622929825.42321-CDS-H-paniculata_contig27358:2022..20731622929825.42321-CDS-H-paniculata_contig27358:2022..2073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27358 2023..2073 +
1691481028.0904734-CDS-H-paniculata_contig27358:2022..20731691481028.0904734-CDS-H-paniculata_contig27358:2022..2073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27358 2023..2073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27358.7489.1

>prot_H-paniculata_contig27358.7489.1 ID=prot_H-paniculata_contig27358.7489.1|Name=mRNA_H-paniculata_contig27358.7489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MASFGAALSSLTVLTFIISAGESFHVLWFTQAKTHLGIQQTRSDRTTAVC
SARQLLCRPCFVSAKSLVGTRFSARERGVLIVAFLASRGPSYGDNAGDRV
TGVETDAQDIESDTQRSKRELVKTVQSTKLR*
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mRNA from alignment at H-paniculata_contig27358:554..2144+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27358.7489.1 ID=mRNA_H-paniculata_contig27358.7489.1|Name=mRNA_H-paniculata_contig27358.7489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1591bp|location=Sequence derived from alignment at H-paniculata_contig27358:554..2144+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCCAGACCATACCAAATTTTGAGCGGGGCAACTTGACAGGCACAGAAG
AAGTCCCTGGAGACAGAAAGTGAGAGCAGCAGCAGAGTCGGGGGAGGCTG
CACGTATGTCAGTACGTTTGCCTAGGGGTGTTGCCTTTCGTGCGCAGCAG
CCATGGCTTCCTTCGGAGCCGCGCTCTCTTCTCTCACCGTCCTGACCTTT
ATCATTTCAGCGGGCGAGTCGTTTCACGTCCTCTGGTTTACCCAAGCAAA
GACGCATTTGGGGATCCAGCAGACACGTAGTGACAGGACAACTGCTGTGT
GTTCCGCACGGCAGCTGCTATGTCGCCCTTGTTTCGTGTCAGCAAAATCT
TTAGTAGGTACGAGATTCTCTGCTAGGGAACGGGGGGTGCTCATCGTCGC
CTTCCTTGCATCGCGAGGCCCAAGCTATGGGGATAATGCGGGCGACCGTG
TGACAGGGGTGGAGACAGATGCTCAAGACATAGAGTCTGATACGCAGGCA
TGTCCATCACTGTCTGTGTAGAACTATTATATTGCAGCTCTATTACTATA
GTACATTTGACCTTCGCGCTATGAAGTAGTTGTGCAGCATTTTCAAATTT
ATTGAATGGTAGATGCTGCGGTTGTTGCAAGGCAGCTACGTCTGCGCTCG
CTATTGTGCTCCGTTCCTTTTCACTATGACAGTCAGTAGTACAGTAACAC
TTGGCTCGGCCAAGCGCTTTTGAAATCGAGAGGCGCTGGGGTGCAGTACC
GTACAACGCTACACAGGACAATTGGGCGGAGCGATTCGGGGTTGTCGATG
TCCCAAAATCGGTCCCAACGACCAAAATGAAATCCACTATGTGTTGTTTT
TATCTCATAGACGAAAAATGACGAATTACTTGATTTAAGTATTAAAACTT
ATATTGAGGAAACCTTAGCTCTGAGATCGAAGTGGCTAATGCGAGTGTAG
TAAGTACATGTTGACAGCTGTGATCTAGTGTATGTGTAGGGGCGACTTTT
TGGATTTGTCGTATATTGGTGACGCACGTCACGATAATAATGTACTAAAA
AATATTTCTGTCCGTAGCTCGCTCATTTTTTTGTTGAGCCAAAATCACCA
CTGCACATGCATTAGTAATGGTCACCGCCGACACGCACACAATTCCTCTC
AGTTTTCAACGAGAACTGCCTCATCAAAGGTCGTATGGGTTGCCATGCGG
CCAAGTTATTCGATACTAGTTTCAAGTATAAAACATTTAAACATAACAGC
ATGACTTGGCGGCTAGGCGTTTCTGTACTAATTTCATGTATAAAGCCATG
TACCTAAATCGAGCAGCATCAGCACGATTCATTTTTTTTCTGAGGTTTCA
AGAAATGGGAGTGACTGCACAATTTCTTCAGGCGGGTACAGCAGTACAAC
ACTTAATACAAGCAGTAGACCAAATCGCTCGACAAGACCTGCCCTACCCC
CTTCTGTGCGTTTTAGCAGCGGTCAAAACGAGAATTGGTAAAAACCGTTC
AAAGTACCAAGCTGCGCTGACATCGAAACGCGCCGTGGAGAGAGATGGAT
GGCTTGGCGTTGTCCGAGGCCCTGCGGCACCGCTCGGCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig27358:554..2144+

>mRNA_H-paniculata_contig27358.7489.1 ID=mRNA_H-paniculata_contig27358.7489.1|Name=mRNA_H-paniculata_contig27358.7489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig27358:554..2144+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTCCTTCGGAGCCGCGCTCTCTTCTCTCACCGTCCTGACCTTTAT
CATTTCAGCGGGCGAGTCGTTTCACGTCCTCTGGTTTACCCAAGCAAAGA
CGCATTTGGGGATCCAGCAGACACGTAGTGACAGGACAACTGCTGTGTGT
TCCGCACGGCAGCTGCTATGTCGCCCTTGTTTCGTGTCAGCAAAATCTTT
AGTAGGTACGAGATTCTCTGCTAGGGAACGGGGGGTGCTCATCGTCGCCT
TCCTTGCATCGCGAGGCCCAAGCTATGGGGATAATGCGGGCGACCGTGTG
ACAGGGGTGGAGACAGATGCTCAAGACATAGAGTCTGATACGCAGATGGC
TTCCTTCGGAGCCGCGCTCTCTTCTCTCACCGTCCTGACCTTTATCATTT
CAGCGGGCGAGTCGTTTCACGTCCTCTGGTTTACCCAAGCAAAGACGCAT
TTGGGGATCCAGCAGACACGTAGTGACAGGACAACTGCTGTGTGTTCCGC
ACGGCAGCTGCTATGTCGCCCTTGTTTCGTGTCAGCAAAATCTTTAGTAG
GTACGAGATTCTCTGCTAGGGAACGGGGGGTGCTCATCGTCGCCTTCCTT
GCATCGCGAGGCCCAAGCTATGGGGATAATGCGGGCGACCGTGTGACAGG
GGTGGAGACAGATGCTCAAGACATAGAGTCTGATACGCAGCGGTCAAAAC
GAGAATTGGTAAAAACCGTTCAAAGTACCAAGCTGCGCTGACGGTCAAAA
CGAGAATTGGTAAAAACCGTTCAAAGTACCAAGCTGCGCTGA
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