mRNA_H-paniculata_contig2733.7484.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2733.7484.1
Unique NamemRNA_H-paniculata_contig2733.7484.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2733.7484.1 vs. uniprot
Match: A0A835YJ42_9STRA (Signal peptidase 22kDa subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ42_9STRA)

HSP 1 Score: 218 bits (556), Expect = 2.580e-67
Identity = 102/169 (60.36%), Postives = 129/169 (76.33%), Query Frame = 1 
Query:  112 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLHKGFPDVRKLSVSKFRNFRESEGTDRLLLNIDLDADLGPAFNWNVKQLFAFVVAEYKTKTNPVNQVILWDKVIESADQAHIVEEDVTIKYSFIDEGAGLRNTSVTLMLYWDHMPLTGSLFMHSVAVDTFEAPGEYKR 618
            M+T WVRLNAVVFFGLTVLLGL+++TA STYLH+G P V+ L ++K ++FR     DR ++N DL+ADL PAFNWN+KQ+F FVVAE+ TKTNP+NQ+ILWDK+IE  + A +  + + +KY  ID+   L+ T VTL LYWDHMPLTG L+ HSVA DTF  P EY R
Sbjct:    1 MNTVWVRLNAVVFFGLTVLLGLALMTATSTYLHEGHPTVKTLRLNKIKSFRSQSKVDRAIINFDLEADLAPAFNWNIKQIFVFVVAEFATKTNPLNQIILWDKIIEKPEDARLNLKKMHVKYGLIDQREELKGTDVTLHLYWDHMPLTGRLYTHSVAEDTFTLPMEYIR 169
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BLAST of mRNA_H-paniculata_contig2733.7484.1 vs. uniprot
Match: A0A6V1NT77_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NT77_HETAK)

HSP 1 Score: 207 bits (526), Expect = 9.710e-63
Identity = 93/155 (60.00%), Postives = 124/155 (80.00%), Query Frame = 1 
Query:  112 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLHKGFPDVRKLSVSKFRNFRESEGTDRLLLNIDLDADLGPAFNWNVKQLFAFVVAEYKTKTNPVNQVILWDKVIESADQAHIVEEDVTIKYSFIDEGAGLRNTSVTLMLYWDHMPLTGSLFMHS 576
            M+T WVR+NAVVFFGLTVLL L+++ A STYLHKG P+++ L V+  R+ +   G DR L++ DLDADL PAFNWN+KQLF FVVAEY T+ NP+NQVI+WDK++ES ++AH+ + ++ +KY+ ID+G  LR+  VTL LYWDHMPLTG L+M+S
Sbjct:    4 MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLHKGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKNPLNQVIIWDKIVESKEEAHLKDRNIFVKYALIDQGKNLRDKDVTLKLYWDHMPLTGRLYMNS 158
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BLAST of mRNA_H-paniculata_contig2733.7484.1 vs. uniprot
Match: A0A7S2XZ74_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ74_9STRA)

HSP 1 Score: 204 bits (520), Expect = 6.600e-62
Identity = 98/171 (57.31%), Postives = 126/171 (73.68%), Query Frame = 1 
Query:  112 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLHKGFPDVRKLSVSKFRNFRESEGTDRLLLNIDLDADLGPAFNWNVKQLFAFVVAEYKTKTNPVNQVILWDKVIESADQAHIVEEDVTIKYSFIDEGAGLRNTSVTLMLYWDHMPLTGSLFMHSVAVDT----FEAPGEY 612
            M+T WVRLNAVVFFG TVLL L+ + + ST+LHKG P ++ L ++  R+ R  +G DR+L++ D+DADL  AFNWN+KQLF FVVAEY TKTNP NQVILWDK+++S ++A I E  V +KY+ ID+G  LR+ +VTL LYWDHMPLTG L+MH    D     F+ P EY
Sbjct:    1 MNTIWVRLNAVVFFGFTVLLCLACMCSFSTFLHKGEPHIKYLGLNTIRSMRAQKGGDRVLISFDIDADLSGAFNWNIKQLFVFVVAEYATKTNPFNQVILWDKIVQSPEEARIKEPKVFVKYALIDQGPELRSNNVTLKLYWDHMPLTGRLYMHDSIGDAKANEFQLPDEY 171
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BLAST of mRNA_H-paniculata_contig2733.7484.1 vs. uniprot
Match: A0A7S2SN40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN40_9STRA)

HSP 1 Score: 201 bits (511), Expect = 2.500e-60
Identity = 101/197 (51.27%), Postives = 128/197 (64.97%), Query Frame = 1 
Query:  112 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLHKGFPDVRKLSVSKFRNFRESEGTDRLLLNIDLDADLGPAFNWNVKQLFAFVVAEYKTKTNPVNQVILWDKVIESADQAHIVEEDVTIKYSFIDEGAGLRNTSVTLMLYWDHMPLTGSLFMHSVAVDTFEAPGEYKRR*LNMAEQRHVCSPSRPGQRERME*KLS 702
            MHT WVRLNAVVFFGLTV++ L+VLT  ST  H+G+P V  L ++     R     D  +L+ DL ADL PAFNWN+KQLF FVVAEY+TKTNP+NQV+LWD++IE A+ A I E+   ++Y  ID G  LRNT+V L L WDHMP+TG LFM S+   +F+ PG+Y               P  PG R R   ++S
Sbjct:    1 MHTVWVRLNAVVFFGLTVIVVLAVLTWFSTVTHRGYPTVDTLQLNSIGTLRNHGERDIAILSFDLHADLSPAFNWNIKQLFVFVVAEYRTKTNPLNQVVLWDRIIERAEDAVIAEDVAQMEYGLIDYGTELRNTTVNLRLVWDHMPITGRLFMDSLPTSSFKLPGQYSDP-----------IPDGPGSRSRSRRRMS 186
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BLAST of mRNA_H-paniculata_contig2733.7484.1 vs. uniprot
Match: A0A7R9UGA1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGA1_9STRA)

HSP 1 Score: 182 bits (461), Expect = 8.180e-53
Identity = 92/174 (52.87%), Postives = 116/174 (66.67%), Query Frame = 1 
Query:   94 DTPDRNMHTAWVRLNAVVFFGLTVLLGLSVLTALSTYL-HKGFPDVRKLSVSKFRNFRESEGTDRLLLNIDLDADLGPAFNWNVKQLFAFVVAEYKTKTNPVNQVILWDKVIESADQAHIVEEDVTIKYSFIDEGAGLRNTSVTLMLYWDHMPLTGSLFMHSVAVDTFEAPGEY 612
            D  +  MHT WVRLNAVVFF  TVLL LS L A+ T L H G P V  L + + R+ R+    DR +L  D+DADL  AFNWNVKQLF FVVAEY T+TNP+NQV +WDK+IE  + A I +++  +KY+ ID+GA LR   VTL L W+ MPLTG + ++S    +F  P EY
Sbjct:   12 DCEEGRMHTIWVRLNAVVFFSFTVLLALSTLAAVQTMLFHDGQPVVHTLRLRELRSLRKHANIDRAMLTFDIDADLRGAFNWNVKQLFVFVVAEYATQTNPLNQVFIWDKIIEREEDAVIKQDNQFVKYALIDQGAELRGKDVTLRLVWEQMPLTGQILLNSGGSKSFYMPNEY 185
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BLAST of mRNA_H-paniculata_contig2733.7484.1 vs. uniprot
Match: A0A448Z0X0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0X0_9STRA)

HSP 1 Score: 179 bits (453), Expect = 8.300e-52
Identity = 91/178 (51.12%), Postives = 122/178 (68.54%), Query Frame = 1 
Query:  112 MHTAWVRLNAVVFFGLTVLLGLSVLTALS----TYLHKGFPDVRKLSVSKFRNFRESEGTDRLLLNIDLDADLGPAFNWNVKQLFAFVVAEYKTKTNPVNQVILWDKVIESADQA---HIVEEDVTIKYSFIDEGAGLRNTSVTLMLYWDHMPLTGSLFMHSVAVDT---FEAPGEYK 615
            MHT WVRLNAVVFFGLTVLLGLS L A S    +Y+H+  P +  L ++  R+ +   G DR LL+ ++DAD+ PAF+WNVKQLF +VVA Y+T +  +N V++WDK+IE+ D     HI +E+V +KY+ +D+G  LR   V+L L WDHMP+TG ++M S A DT   F  P EYK
Sbjct:    1 MHTVWVRLNAVVFFGLTVLLGLSCLAAFSKIGHSYIHQ--PIINTLELNTLRSLKSHGGVDRALLSFNIDADMNPAFHWNVKQLFVYVVASYETSSKEINDVVIWDKIIENIDSVEDKHIKQENVFVKYALVDQGNELRGKDVSLRLMWDHMPITGFVYMDSQAKDTTTSFSLPLEYK 176
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BLAST of mRNA_H-paniculata_contig2733.7484.1 vs. uniprot
Match: B8CCG8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCG8_THAPS)

HSP 1 Score: 178 bits (451), Expect = 1.650e-51
Identity = 93/175 (53.14%), Postives = 119/175 (68.00%), Query Frame = 1 
Query:  112 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLH--KGFPDVRKLSVSKFRNFRESEGTDRLLLNIDLDADLGPAFNWNVKQLFAFVVAEYKTKTNPVNQVILWDKVIESADQAH---IVEEDVTIKYSFIDEGAGLRNTSVTLMLYWDHMPLTGSLFMHSVAVDT---FEAPGEY 612
            MHT WVRLNAVVFFGLTVLL LS+L ALS   H  +  P + KL+++  R+ +   G DR LL+ DL AD+ PAF+WN+KQ+F +VVA YKT TNP NQV+LWD++IE++  A    + E++V +KY  ID+G  LR   V L L WDHMPLTG+L+M   A  T   F  P EY
Sbjct:    1 MHTVWVRLNAVVFFGLTVLLCLSILAALSKIGHTRRYQPKIHKLALNNLRSVKNHGGVDRALLSFDLHADMNPAFHWNIKQIFVYVVATYKTDTNPKNQVVLWDRIIEASSPASSKILKEDNVFVKYGLIDQGNELRGKEVELSLMWDHMPLTGTLYMGQQAEGTASKFTLPAEY 175
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BLAST of mRNA_H-paniculata_contig2733.7484.1 vs. uniprot
Match: D7FLF7_ECTSI (Probable Spc3 homolog, subunit of Signal Peptidase Complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF7_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.940e-51
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:  112 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLHKGFPDVRKLSVSKFRNFRESEGTDRLLLNIDLDADLGPAFNWNVKQLFAFVVAEYKTKTNPVNQ 402
            MHTAWVR+NAVVFFGLTVLL LSVLTALSTYLH+GFPDVRKL VSKFR FR+SEGTDRLLLNID+DADL PAFNWNVKQLFAFVVAEY+T TNPVNQ
Sbjct:    1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQ 97
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BLAST of mRNA_H-paniculata_contig2733.7484.1 vs. uniprot
Match: A0A7S2XM83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XM83_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.910e-51
Identity = 89/168 (52.98%), Postives = 116/168 (69.05%), Query Frame = 1 
Query:  100 PDRNMHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLH--KGFPDVRKLSVSKFRNFRESEGTDRLLLNIDLDADLGPAFNWNVKQLFAFVVAEYKTKTNPVNQVILWDKVIESADQAH---------IVEEDVTIKYSFIDEGAGLRNTSVTLMLYWDHMPLTGSLFM 570
            P RNMHT WVRLNAVVFFGLTVLLGLSVL A+S   H  +  P V KLS+++ R+ +   G DR LL+ DL AD+ PAF+WN+KQLF +VVA Y+T TNP NQ++LWDK+IE+ D+           I ++++ +KY+ +D+   LR   + L L WDHMPLTG L M
Sbjct:    1 PTRNMHTVWVRLNAVVFFGLTVLLGLSVLAAISAIGHSTRHKPVVSKLSLNQLRSLKSHGGVDRALLSFDLHADMRPAFHWNIKQLFVYVVASYETDTNPNNQIVLWDKIIEATDEGDANDDVGGKVIHQDNIFVKYALVDQADELRGKEIKLQLMWDHMPLTGVLHM 168
[Close]
BLAST of mRNA_H-paniculata_contig2733.7484.1 vs. uniprot
Match: A0A6T8P1E8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8P1E8_9STRA)

HSP 1 Score: 178 bits (452), Expect = 3.590e-51
Identity = 90/173 (52.02%), Postives = 119/173 (68.79%), Query Frame = 1 
Query:  112 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLH--KGFPDVRKLSVSKFRNFRESEGTDRLLLNIDLDADLGPAFNWNVKQLFAFVVAEYKTKTNPVNQVILWDKVIESADQAHIV--EEDVTIKYSFIDEGAGLRNTSVTLMLYWDHMPLTGSLFMH-SVAVDTFEAPGEYK 615
            MHT W+RLN VV FGLT LLG S+L ALST  H  +  P V KL ++  ++ +   G DR LL+ DL ADL PAF+WN+KQLF +VVA YKTKTNP+N+V+LWDK++E+     ++  E++  +KY+ +D+ A LR   V L L WDHMPLTG+L+M  S    TF+ P EYK
Sbjct:   40 MHTVWIRLNGVVMFGLTALLGFSILAALSTLGHDKRHQPAVTKLQLNTLKSLKSHGGVDRALLSFDLHADLRPAFHWNIKQLFVYVVATYKTKTNPLNEVVLWDKIVEAIHPEDMILKEDNCFVKYALVDQVAELRGKEVELKLMWDHMPLTGALYMGGSDQTSTFKLPNEYK 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2733.7484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJ42_9STRA2.580e-6760.36Signal peptidase 22kDa subunit n=1 Tax=Tribonema m... [more]
A0A6V1NT77_HETAK9.710e-6360.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XZ74_9STRA6.600e-6257.31Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SN40_9STRA2.500e-6051.27Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9UGA1_9STRA8.180e-5352.87Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A448Z0X0_9STRA8.300e-5251.12Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B8CCG8_THAPS1.650e-5153.14Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
D7FLF7_ECTSI1.940e-5189.69Probable Spc3 homolog, subunit of Signal Peptidase... [more]
A0A7S2XM83_9STRA2.910e-5152.98Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A6T8P1E8_9STRA3.590e-5152.02Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2733contigH-paniculata_contig2733:14285..19222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.8
Seed ortholog evalue8.7e-42
Seed eggNOG ortholog35128.Thaps9852
Preferred nameSPCS3
KEGG koko:K12948
KEGG Pathwayko03060,map03060
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0005911,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009506,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0016787,GO:0019538,GO:0030054,GO:0030154,GO:0030312,GO:0031984,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045444,GO:0046907,GO:0048869,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055044,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:0140096,GO:1901564,GO:1902494,GO:1905368
EggNOG free text desc.Signal peptidase subunit
EggNOG OGs2XG56@2836,KOG3372@1,KOG3372@2759
COG Functional cat.U
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons4
Model size1060
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2733.7484.1prot_H-paniculata_contig2733.7484.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2733 14721..19111 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.813223-UTR-H-paniculata_contig2733:14284..147201622929824.813223-UTR-H-paniculata_contig2733:14284..14720Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2733 14285..14720 -
1691481027.8202746-UTR-H-paniculata_contig2733:14284..147201691481027.8202746-UTR-H-paniculata_contig2733:14284..14720Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2733 14285..14720 -
1622929824.9220827-UTR-H-paniculata_contig2733:19111..192221622929824.9220827-UTR-H-paniculata_contig2733:19111..19222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2733 19112..19222 -
1691481027.8713996-UTR-H-paniculata_contig2733:19111..192221691481027.8713996-UTR-H-paniculata_contig2733:19111..19222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2733 19112..19222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.8316426-CDS-H-paniculata_contig2733:14720..148521622929824.8316426-CDS-H-paniculata_contig2733:14720..14852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2733 14721..14852 -
1691481027.8347962-CDS-H-paniculata_contig2733:14720..148521691481027.8347962-CDS-H-paniculata_contig2733:14720..14852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2733 14721..14852 -
1622929824.8545492-CDS-H-paniculata_contig2733:15244..153341622929824.8545492-CDS-H-paniculata_contig2733:15244..15334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2733 15245..15334 -
1691481027.8448057-CDS-H-paniculata_contig2733:15244..153341691481027.8448057-CDS-H-paniculata_contig2733:15244..15334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2733 15245..15334 -
1622929824.8820796-CDS-H-paniculata_contig2733:18666..188541622929824.8820796-CDS-H-paniculata_contig2733:18666..18854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2733 18667..18854 -
1691481027.8559945-CDS-H-paniculata_contig2733:18666..188541691481027.8559945-CDS-H-paniculata_contig2733:18666..18854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2733 18667..18854 -
1622929824.9033947-CDS-H-paniculata_contig2733:19008..191111622929824.9033947-CDS-H-paniculata_contig2733:19008..19111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2733 19009..19111 -
1691481027.8637214-CDS-H-paniculata_contig2733:19008..191111691481027.8637214-CDS-H-paniculata_contig2733:19008..19111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2733 19009..19111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2733.7484.1

>prot_H-paniculata_contig2733.7484.1 ID=prot_H-paniculata_contig2733.7484.1|Name=mRNA_H-paniculata_contig2733.7484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLHKGFPDVRKLSVSKFRNF
RESEGTDRLLLNIDLDADLGPAFNWNVKQLFAFVVAEYKTKTNPVNQVIL
WDKVIESADQAHIVEEDVTIKYSFIDEGAGLRNTSVTLMLYWDHMPLTGS
LFMHSVAVDTFEAPGEYKRR*
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mRNA from alignment at H-paniculata_contig2733:14285..19222-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2733.7484.1 ID=mRNA_H-paniculata_contig2733.7484.1|Name=mRNA_H-paniculata_contig2733.7484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4938bp|location=Sequence derived from alignment at H-paniculata_contig2733:14285..19222- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCTTTCAATATTTCATTATGTCAGTAAGGACCCCTAGCCCAATCGGAT
AAGTGCTACGTGAGCTTATTGCAGTCCTGCCGTCCAGACTACAGATACTC
CAGACCGCAACATGCACACCGCGTGGGTTCGACTCAATGCTGTGGTATTC
TTTGGTCTTACAGTTCTTCTTGGTCTGAGCGTTCTCACAGCGCTGAGCAC
CTATCTTCACAAAGGTGAGCAAGTGCATCATACTCAATGGAGGGGTGTCG
TGCTGACCAGGCGATCCCAAGCGGTCGGTGCCCGTTGATGGTTAAGCATG
AACAAGAGCGTAGCATCTACCTTGACTGAACCCCCTTTGCCCTCCATTCC
TCTATTACTCAATCGCAGGATTTCCTGATGTTCGTAAGCTGAGTGTGAGC
AAATTTAGGAATTTCCGAGAGTCTGAGGGAACGGACCGGCTACTGCTGAA
CATCGACTTGGATGCCGACTTAGGTCCAGCTTTCAACTGGAATGTGAAGC
AACTTTTTGCCTTCGTCGTTGCGGAGTACAAGACCAAAACCAACCCCGTC
AACCAGGCAAGACCCTTTTATTTTCTCTCTTCGGCAGTCATGTCGTTACC
AAATGATGTTGCTTAACCGTTAGTTAAACCCAACTACGATGTTCCCGTGT
TCAACTCAAGGCTAGGCTTGCGACTTGACCCTATATAGCGCCCCCAACAG
CGAGTAGATGCACCGCCACAAATCTTTCCGCAAGTTCTACAACCCGACCA
ATCTACAATATTTACAAGTCAGTTGGACTCTTCTACAGCAGTCAGGGTGT
GATGCTATGCTAGCCGAGTGTGTATTTGATTGACTAGCAGAGTTGTAGTG
CTCGACTTTCTGAAGCGTCATACAGCGCAACGAAACTGCGGTGGCACAGG
CAGGGAGCCAACAGACTGAGAGCGGTGGACACTGACTGTATTTCACACCC
GATCAGTTCGTATGAGTAAACGATATTCACTGTAATACATGACATTTTTT
GTCTCACCAAGATGTATCAGAGTGGGTGTGCAAAACCAAAGTCCTTTTGG
AAATTTCGTTTTGGTCGAGTATAGCTGCTCCTCGTATGGGACCCTAGTCA
CGAACGAATTTGTTCGTTGTCATGGCCGTTGACCATTTGAATACACTAAT
TTTGAAGGGGAATTCCTTTCGTATCGAGACGTTGGTGTGGGTTAGCTGGC
ATTTTTTTTTTTTTAACCCCCGGAAGGTCAGGCAAAAAACCCTTTCCGCT
GCTTCCACTCTTCGGAAGATTTCTGAGGTTAGCTGGCATGCACAGGGGAG
GGGGTCTGCGACGAGTAGCTAATTATTAGCTATATAGCCAGAAATCGAAA
ATTGCAAAAGGTACTCGATTTGCACAAACACTATTTCAGCAGCAGTTGAC
AGATCTATAGCCAACCAACAATAGTCCATCGTGTTGTCAGCAGAAGACAT
ACGGTAATATCATCTAAGCTGGCACCCCCTTTGATTTGCACCCCCCTTTG
GTCCGCAACCGGTGCGATCTTAAAGGGGGGTTGCGCGCGTTTTTATGCCG
GGGGGGTCTTCAAAAAGCACCTTTTTAGGGGTGTTGTAGTATATTTTAAG
AGGTGCCGGTATTTGCATGACGCCTCTGATTGACTGCGGTATGTAGTCCA
CTAAATAGCACAAAAGCTCAGAGTATATTTATATGCAATCGAACATATTC
CGTGGGATGCTTGTACTCCCCGTGAAAAAGCATATCAAAACCCTGCATAT
GCTACGGCTCCAGAAACATGAAACAGAAAAAAAATAAAAGAATAGAAACA
CCTGCTTGACGCGGTCCTCTTCCTTCAGCCTATCGAAACGGCTGCGTGCT
GAACCAGTACACGACAACAACCGACTCTCCAGCAGTTCGACGATGGAATC
AGAGTCATCCCCCAAGTCCATAATGTTGAACGCCTGGATGTCGCTGCCAT
CGTTCTCGTCGTCTGTGCTTTCGTCTCCGCCCTTCGGGTTATTGGCTAAC
TTCTCTGAAACATACTTCGACACATTTGTGATGGAGTTGGTGTTCTGTCG
GTTGCCCTGTATAACGGGTAGCTGTAGCGACTCCAGGGTAATGCGGTGTA
CATCCTCCTGCTCCGCCCCCTGCTTCGCCAGGATTGTGCGGTAGTCCTTG
CCGGACATGTGCTCACACCATTCGTGGTCCTTGCTCCCGCCGAGGTTGAG
CGAAAGTTCGCAGATCATGAAGCACTTCCTCACCAGGTCGGGCAGTATTT
GGTCTCAGACCTTTTGATCCACGTCGACGCTGCACCCGTCCTGGGGGCTT
GAGTTTACCCGTTTTCGGGTTCGCGACGGTAGTGTCGCTCCAGGCAATAT
ATTTTCCCCGCACCCCGCGCTTCATCTCCTTGTTGAGCATGTCATTTAGC
CGCTGTTGGGCCACCAGAAAAGAGAATGTTGTCCACGTTGGTCTCCTTCA
AGCTCTTCTGGAACTTACGGTGACGGTGGTACTTGCAGTCGTCGAGCATC
AATACGCTCGCTTGCTGGCTAAAGCAAGCTTTTCCCCAGGTAACCCTTCC
GGTTTTCCCGCAGCCACAGCTTTCACTCCCGATTGTCACACCAGCTGTTT
TCATGCACGTTTGATGTAGTTGGGAACTACGGTACGCAGCAAGCTACAAA
ACGCCGCCCCAAAGCGAAGCAAAGCAGCATCCAATAGTTGTTCTTCCCTA
ACGGCGAAGAATACCTGCGCGCGAGGTTTTTCATCGGCGTAAACTTTTAG
GCGGCTGGATTTTTTTCGGCAATAAGCTGTCGAACCTGCGTCACAGTGAA
AGCGGAAATACCTTATCACGATATCGCGCCACTGGCTGTGGCATCCTGAA
TCAGATACGACTGCAAGTCCGTGCGTTACAAACACAGCAGGTAAAGGTGT
CAAATGTCTGAATGACTGCCTAAAAACAACACTGCCAAGTTAGCTTGTAA
CGCTGCACGAGCTAGAGGACAAGTCTAGCGGTGTTTTTTACGTTATATTT
TATATATTACCCACATTACATCTATGTTAGTGGTACAATACATACTCATG
TAGGCAACAGCCAGTGGACAAAAATAATGAACAATATATAGTCCTTGTCC
TGTAGGTTTGGACCGTTAAGATGTAGCTCCTCGAGATGACCTCCGATTAC
CAAACGGACTTTTGCGTTTGATTCTTCGAATATTTCACAGTAGAAACCCA
TCTCTCGTCCTTATTCCACACTCTCAACCCACTGATCCAGCGCCGCGGTG
GAGGCGGCTCGGTTTAGTTGGACACATGTAGCTAATCTGCCCTCCTGCTG
CCCTTTTTTGATTCCGGTGTGCTCTACGTCGAAATTGTTCCGACCCAGCG
CTCTCAACACCGGATTGTACCTCTTGAACAGGTTGCTACACTCTCTCGAA
CGTGCCTGGGTAGTATGCGTGGAACATGTTTGAAACCCCTTCTACAAGTT
CAACAACGGTACTGTAACGCTCCGACAAACCCTAGCCTTAGATACATTGC
ACGTCTCAGGGGTTTATATTGAACATTGACCAGTTACAAGACCCGCGTTT
CTTATGGATCCGGGTCCACTCTGACGTATATTGTCAGATTCTATGGGTAA
GCATAATAAATGATATTCTGGCTATATTTATACGGCGTGTTTGATACACA
CTACATGTTCGTCGATGTTTTCTGTTCAACGTATATTGCAACGACCACCA
ATCTCTTGTATGGGTCATTGTGCGCTGCTCAGGTCGTCATTTTGCCAAGT
CTACGTTACAATATTACAATGGGCATTTCGTGTGTGAACAATACATGTAG
ATTCAGATGTAACGTACCTTGGTTTACATGCATTCTCAAGTTTGGCACTG
TTCACAATATTGTAATGTATGCTACTGCCATGCGACAGGTGATACTGTGG
GACAAAGTTATTGAGAGTGCGGATCAGGCGCACATTGTTGAAGAAGACGT
GACCATCAAGTATAGTTTTATTGATGAGGTGAGCTCGTCAATGAGTGGTG
GACTTCAATATAGATTGTATTTGGTCAGTAAAGAAGGTATGACCTCTTTT
TGTCAGACATGTCACCACTGTAATTGTTGTATTCTTTTGTATTTTATCCC
ACAGTATGTCATTGTTAGTGCAAATCAGGCGCACATTGTTCAAGACGTGA
CCATCACGCATCGTCTTATTGATAAGGTGAGCTAGAAGAAAGGTTGACTT
CATATGCAAGCCTGTATATGGTCGGTAATAAAGGTATGATCTTTTTTTTG
TCAGACGTGTCACCAAGTTAACTGCCGCATTATTTTGCATTATATTCCGC
AGTATACTTTTGACATATAATGTTCTATCATATTTTTGTTTGTGTACCAC
ATCTTCGCTGCTGTATACAGGGAGCGGGCTTGCGAAATACATCGGTGACC
CTTATGCTCTACTGGGATCATATGCCGCTCACTGGGAGTCTCTTCATGCA
CAGTGTAGCTGTTGATACGTTTGAAGCTCCTGGAGAATACAAGCGGCGAT
AATTGAACATGGCAGAACAGAGGCATGTGTGCTCTCCTTCTCGGCCAGGG
CAACGGGAAAGGATGGAATAAAAACTATCGTTTACTCTACTGTTTAACCT
TGAATGTTGATTGTAGGAACTACGGTAGTAACGTGAGCAGGTGGGAAGAC
TTACCATGTTCCGACAGTAGATTCTAACATTTAGTGCAGCAATGGCTTCT
GTATCTTTTTTCATACATCTTGACTATTGTGAAAAGAGATGTATTTGTCT
ACACAATATGGTGCATACGTTTTGATCAGGGGTATGACATTCATTCATCT
TTATCGGTTGAAATGATGCCAACGTCGTGAATGTAGAAGTTATATATTCC
TGTCCTTGACACCGTGGAGACAGGAAAGGATGATTGTGTAATTTGAAAAA
GAAAGGGTGATATATTATACGCAATGGATCAGTGCTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2733:14285..19222-

>mRNA_H-paniculata_contig2733.7484.1 ID=mRNA_H-paniculata_contig2733.7484.1|Name=mRNA_H-paniculata_contig2733.7484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig2733:14285..19222- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACACCGCGTGGGTTCGACTCAATGCTGTGGTATTCTTTGGTCTTAC
AGTTCTTCTTGGTCTGAGCGTTCTCACAGCGCTGAGCACCTATCTTCACA
AAGATGCACACCGCGTGGGTTCGACTCAATGCTGTGGTATTCTTTGGTCT
TACAGTTCTTCTTGGTCTGAGCGTTCTCACAGCGCTGAGCACCTATCTTC
ACAAAGGATTTCCTGATGTTCGTAAGCTGAGTGTGAGCAAATTTAGGAAT
TTCCGAGAGTCTGAGGGAACGGACCGGCTACTGCTGAACATCGACTTGGA
TGCCGACTTAGGTCCAGCTTTCAACTGGAATGTGAAGCAACTTTTTGCCT
TCGTCGTTGCGGAGTACAAGACCAAAACCAACCCCGTCAACCAGGATTTC
CTGATGTTCGTAAGCTGAGTGTGAGCAAATTTAGGAATTTCCGAGAGTCT
GAGGGAACGGACCGGCTACTGCTGAACATCGACTTGGATGCCGACTTAGG
TCCAGCTTTCAACTGGAATGTGAAGCAACTTTTTGCCTTCGTCGTTGCGG
AGTACAAGACCAAAACCAACCCCGTCAACCAGGTGATACTGTGGGACAAA
GTTATTGAGAGTGCGGATCAGGCGCACATTGTTGAAGAAGACGTGACCAT
CAAGTATAGTTTTATTGATGAGGTGATACTGTGGGACAAAGTTATTGAGA
GTGCGGATCAGGCGCACATTGTTGAAGAAGACGTGACCATCAAGTATAGT
TTTATTGATGAGGGAGCGGGCTTGCGAAATACATCGGTGACCCTTATGCT
CTACTGGGATCATATGCCGCTCACTGGGAGTCTCTTCATGCACAGTGTAG
CTGTTGATACGTTTGAAGCTCCTGGAGAATACAAGCGGCGATAAGGAGCG
GGCTTGCGAAATACATCGGTGACCCTTATGCTCTACTGGGATCATATGCC
GCTCACTGGGAGTCTCTTCATGCACAGTGTAGCTGTTGATACGTTTGAAG
CTCCTGGAGAATACAAGCGGCGATAA
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