mRNA_H-paniculata_contig2733.7483.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig2733.7483.1 vs. uniprot
Match: D7FLF8_ECTSI (FACT complex subunit SSRP1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF8_ECTSI) HSP 1 Score: 892 bits (2304), Expect = 0.000e+0 Identity = 495/629 (78.70%), Postives = 539/629 (85.69%), Query Frame = 1
Query: 1 MNFPKIGIQGHSLGSLQLSSEELVWTSADKSSAKKVKWATVSHATWAQFAEYCHLRLFLQNDLPPVRLDGFSKAQYADVDKFLSKLDIRLSKDRINAGGGNYGELEVLDNIVRFSSENRTLFDLNIKDVSQCVMPGVKKSNDVELQFHESDATDQTEDTLVAIRVTLPEKDEDTDEPSPAESLQMAVIERANIHDVKGKVLVEFNENQGTFDFPRGRYSIEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEAEIAVNMSADDLQQKYNGNLNSEMTGPLHNLIAKIFKVLSNKPVYVTGKFSSNSGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIDSVEFQRYGGAQGAGVTRNFDLCVAPKSVAGEVTKPYIFSGIDRSEYTSLYSFLSTKKLRIKNIKQNGNDGSMLQLGDLDDHDPYKAALDDDQGDXXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXXERPKSSKKKKEAAVPXXXXXXXXXQRAKAVSGGAPSKPPAKKKQKKDPNAPKGASSAFMQFSSAKRAEVKAAQPELKTTEISKVLGERWGKMDAEARAPYTDKAYRDKERYKREMEKYKSR 1887
MNF KIG+QG+SLG+LQL++EEL WTS DKSS+KKVKW VSHATWAQ+A YCHLRLF++ D PVRLDGFSKAQ+AD++KFLS+ D+ LS + N GGGNYG++EVLDNIVRFSS N+TLFDLNIKDVSQCVMPGVKKSNDVELQ HESDATDQTEDTLVAIRVTLPEKDEDTDE SPAESLQMAV+ERANIHDVKGKVLVEFNE+QGTFDFPRGRYS+EMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFV+SLDKPIRQGQQKYQHLVLRTTKDEA I VNMSA+DLQ+KY+ NLNSEM GPLHNLIAKIFKVLSNKPVYVTGKFSS +GAKAVKCALGANEG+LYPLNKSFIFIHKPTCIIGFDEI+SVEFQRYGGAQGAGVTRNFDLCVAPKSVAGE KPY+FSGIDRSEY+SLYSFLSTKKLRIKNIK++GND +MLQLGDLDDHDPYKAALDDDQG+ XXXXX XXXXXXXXXXXXXXXXXXXXXX K+SKK+ Q+ KKD +APKGA SAFMQFS A RA+VK PELK TEISKVLGE+WGK+D + PY DKA DK RYKRE + Y S+
Sbjct: 1 MNFSKIGVQGYSLGNLQLTAEELNWTSDDKSSSKKVKWLDVSHATWAQYAAYCHLRLFMKRDARPVRLDGFSKAQHADIEKFLSERDVSLSNESPNPGGGNYGDIEVLDNIVRFSSGNKTLFDLNIKDVSQCVMPGVKKSNDVELQLHESDATDQTEDTLVAIRVTLPEKDEDTDERSPAESLQMAVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTKDEATITVNMSAEDLQKKYDSNLNSEMIGPLHNLIAKIFKVLSNKPVYVTGKFSSTNGAKAVKCALGANEGYLYPLNKSFIFIHKPTCIIGFDEIESVEFQRYGGAQGAGVTRNFDLCVAPKSVAGETPKPYVFSGIDRSEYSSLYSFLSTKKLRIKNIKESGNDNAMLQLGDLDDHDPYKAALDDDQGEDEESEXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRAH--KTSKKRPGTGS----AKKGPTQKXXXXXXXXXXXXXXXXXAKKDKDAPKGAMSAFMQFSQANRAQVKTDNPELKVTEISKVLGEKWGKLDETQKKPYQDKADEDKARYKRERDAYDSK 623
BLAST of mRNA_H-paniculata_contig2733.7483.1 vs. uniprot
Match: A0A6H5L083_9PHAE (FACT complex subunit SSRP1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L083_9PHAE) HSP 1 Score: 580 bits (1495), Expect = 3.280e-198 Identity = 346/496 (69.76%), Postives = 369/496 (74.40%), Query Frame = 1
Query: 355 RTLFDLNIKDVSQCVMPGVKKSNDVELQFHESDATDQTEDTLVAIRVTLPEKDEDTDEPSPAESLQMAVIERANIHDVKGKVLVEFNENQGTFDFPRGRYSIEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEAEIAVNMSADDLQQKYNGNLNSEMTGPLHNLIAK----IFKVLSNKPVYVTGKFSSNSGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIDSVEFQRYGGAQGAGVTRNFDLCVAPKSVAGEVTKPYIFSGIDRSEYTSLYSFLSTKKLRIKNIKQNGNDGSMLQLGDLDDHDPYKAALDDDQGDXXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXXERP-----------------------KSSKKK------KEAAVPXXXXXXXXXQRA-----KAVSGGAPSKPPAKKKQKKDPNAPKGASSAFMQFSSAKRAE 1728
RTLFDLNIKDVSQCVMPGVKKSNDVELQ HESDATDQTEDTLVAIRVTLPEKDEDTDE SPAESLQMAV+ERANIHDVKGKVLVEFNE+QGTFDFPRGRYS+EMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFV+SLDKPIRQGQQKYQHLVLRTTKDEA I VNMSA+DLQ+KY+ NLNSEM GPLHNL+AK IFKVLS+KPVYVTGKFSS +GAKAVKCALGANEG+LYPLNK GAGVTRNFDLCVAPKSVAGE KPY+FSGIDRSEY+SLYSFLSTKKLRIKNIK+ GND +MLQLGDLDDHDPYKAALDDD+G+ XXXXXXXXXXXXXXXX K+SKKK K+ A + SGG SKP KK+ KKD +APKGA SAFMQFS A RA+
Sbjct: 3 RTLFDLNIKDVSQCVMPGVKKSNDVELQLHESDATDQTEDTLVAIRVTLPEKDEDTDERSPAESLQMAVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTKDEAAITVNMSAEDLQKKYDSNLNSEMIGPLHNLVAKVPKLIFKVLSSKPVYVTGKFSSTNGAKAVKCALGANEGYLYPLNK-----------------------------GAGVTRNFDLCVAPKSVAGETPKPYVFSGIDRSEYSSLYSFLSTKKLRIKNIKERGNDNAMLQLGDLDDHDPYKAALDDDEGEDEESEDDADYAPDARGGSDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDSDDGAHKTSKKKPGTGSAKKGATQKKVGCSPEPSSLNPCFPQRASGGHSSKPTPKKRTKKDKDAPKGAMSAFMQFSQANRAQ 469
BLAST of mRNA_H-paniculata_contig2733.7483.1 vs. uniprot
Match: A0A836C825_9STRA (FACT complex subunit SSRP1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C825_9STRA) HSP 1 Score: 451 bits (1159), Expect = 1.350e-145 Identity = 315/662 (47.58%), Postives = 393/662 (59.37%), Query Frame = 1
Query: 7 FPKIGIQGHSLGSLQLSSEELVWTSADKSSAKKVKWATVSHATWAQFAEYCHLRLFLQNDL-PPVRLDGFSKAQYADVDKFLSKLDIRLSKDRINAGGGNYGELEVLDNIVRFSSENRTLFDLNIKDVSQCVMPGVKKSNDVELQFHESDATDQTEDTLVAIRVTLPEKDEDTD--------------EPSP---AESLQMAVIERANIHDVKGKVLVEFNENQGTFDFPRGRYSIEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEAEIAVNMSADDLQQKYNGNLNSEMTGPLHNLIAKIFKVLSNKPVYVTGKFSSNSGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIDSVEFQRYGGAQGAG-VTRNFDLCVAPKSVAGEVTKPYIFSGIDRSEYTSLYSFLSTKKLRIKNIKQNGNDGSMLQLGDLDDHDPYKAALDDDQGDXXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXXERPKSSKKKKEAAVPXXXXXXXXXQRAKAVSGGAPSKPPAKKKQK-------------KDPNAPKGASSAFMQFSSAKRAEVKAAQPELKTTEISKVLGERWGKMDAEARAPYTDKAYRDKERYKREMEKYKSRTQE 1896
F IGIQGHS+GS++ S E ++W S+D+SS +KV W+ ATWA F +Y HLR+F+++ PPVR DGF +A + + + L+ I+LS+D+ D LV +R+ LP++ ED D + P AE+ AV++RANI DVKG VL E + + GTF PRGRY++EMYS F+RMHGS+YDYKIQY DI+KLFLLEKPD+RYVAFV+SLDKP+RQGQQ+YQHLVL+ +K E + +NMS +LQ+KY G L M G L NLIAKIFK LS + V+VTG + S +GAK VKCA+GA+EGHLYPLNKSFIFIHKPT +IGFDE++SVEFQRY G Q V R+FDLCV +S++GE +K Y FSGIDRSEY SLY + TK LRIKNIK +G+ + +D D + +G+ XXXXXXXXXXXXXXXXXXXXXX XXXXXXXXX SKP K++ KDPNAPKGA SAFM FS R +V QP LK TE+SKVLGERW M AE + + DKA DK RY EM++YKS Q+
Sbjct: 9 FKGIGIQGHSVGSVKFSDEGVMWASSDRSSQQKVLWSKAEKATWAVFGKYAHLRMFMKDPADPPVRFDGFQRADFDRLKEALAAHSIKLSRDK---------------------------------------------------------------DCLVEMRLYLPDESEDDDGMEVDEDGEAIRKKDKKPRFTAETFHQAVMDRANIRDVKGSVLCELDSSLGTFLTPRGRYALEMYSTFLRMHGSKYDYKIQYEDINKLFLLEKPDDRYVAFVISLDKPVRQGQQRYQHLVLQASKVEETLNLNMSEAELQEKYKGALEPVMRGALCNLIAKIFKSLSGRAVFVTGNYRSAAGAKCVKCAMGASEGHLYPLNKSFIFIHKPTRVIGFDEVESVEFQRYSGTQDPSTVRRSFDLCVTLRSISGEPSKDYTFSGIDRSEYPSLYQWCQTKNLRIKNIKSSGDKVASALAEAMDSADVRE------EGEIKRVKSSEPEASGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSKPEGGKRKAPAXXXXXXXXXXXKDPNAPKGAKSAFMYFSMETRGDVLKDQPGLKITEVSKVLGERWRGMTAEDKKQFEDKAAADKARYGTEMQEYKSAQQQ 601
BLAST of mRNA_H-paniculata_contig2733.7483.1 vs. uniprot
Match: A0A7S2SJ65_9STRA (FACT complex subunit SSRP1 (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SJ65_9STRA) HSP 1 Score: 391 bits (1004), Expect = 3.770e-123 Identity = 214/466 (45.92%), Postives = 297/466 (63.73%), Query Frame = 1
Query: 16 IGIQGHSLGSLQLSSEELVWTSA------DKSSAKKVKWATVSHATWAQFAEYCHLRLFLQNDLPPVRLDGFSKAQYADVDKFLSKL-DIRLSKDRINAGGGNYGELEVLDNIVRFSS----------------ENRTLFDLNIKDVSQCVMPGVKKSNDVELQFHESDATDQTEDTLVAIRVTLPEKDE----DTDEPSPAESLQMAVIERANIHDVKGKVLVEFNENQGTFDFPRGRYSIEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEAEIAVNMSADDLQQKYNGNLNSEMTGPLHNLIAKIFKVLSNKPVYVTGKFSSNSGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIDSVEFQRYGGAQGAGVTRNFDLCVAPKSVAGEVTKPYIFSGIDRSEYTSLYSFLSTKKLRIKNIKQN 1332
IG+ GHS+G+ ++ + W SA D +++ + V A W F HLR+ N R DGF + + V +++ D+ +K ++ G ++G E+ D + F E + + + +VSQCV+PG + N++ELQFHESD + D LVAIR +P E D D P+ AE +++ A I + G V+VEF+EN+GTF PRGRY IE+Y F+RM G++YDYKI+Y+DI++LFLL KPD+ ++AFV++LDKPIRQGQQ+YQ LVL+TTK+ +E+ VN+ +L+++Y G L M G L NLIAK FK+++ K V++ GKF + VKCAL ANEGHLYPL KSF+FIHKP +I FDE+DSVEFQRY G QG+ TRNFDLCV S AG+ K YIFSGIDRS+YTSLY+FLS KK++IKNI+++
Sbjct: 15 IGLHGHSVGTFMADAQGIKWKSALLTDDDDVVTSRSISKKHVIGARWTIFGRSGHLRIQTPNT--EFRFDGFPYSDFDKVRDIMNEYYDVETNKLPMSTAGNSFGLTEIEDRNLAFKQCILEDADEEGEEFEPREGDEMMSMKLAEVSQCVLPGNNR-NEIELQFHESDTVEAGTDQLVAIRFYIPPDPEMDPSDRDAPTSAEVFHQRIMKNAKIKNTAGDVIVEFDENKGTFLTPRGRYLIELYDSFLRMRGNKYDYKIKYDDIARLFLLPKPDDTHMAFVIALDKPIRQGQQRYQMLVLQTTKENSEVTVNLDEKELEEEYKGELQPVMQGALCNLIAKTFKIIAKKKVFIPGKFVNAYQQSCVKCALKANEGHLYPLEKSFVFIHKPPVLIRFDEVDSVEFQRYAGGQGS--TRNFDLCVMLASSAGDPQKEYIFSGIDRSDYTSLYNFLSGKKIKIKNIQES 475
BLAST of mRNA_H-paniculata_contig2733.7483.1 vs. uniprot
Match: A0A7S4HR37_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HR37_9STRA) HSP 1 Score: 400 bits (1028), Expect = 1.010e-122 Identity = 258/670 (38.51%), Postives = 369/670 (55.07%), Query Frame = 1
Query: 16 IGIQGHSLGSLQLSSEELVWTSA--------DKSSAKKVKWATVSHATWAQFAEYCHLRLFLQNDLP---PVRLDGFSKAQYADVDKFLSKL-DIRLSKDRINAGGGNYGELEVLDNIVRFSS----------------ENRTLFDLNIKDVSQCVMPGVKKSNDVELQFHESDATDQTEDTLVAIRVTLP-EKDEDTDE---PSPAESLQMAVIERANIHDVKGKVLVEFNENQGTFDFPRGRYSIEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEAEIAVNMSADDLQQKYNGNLNSEMTGPLHNLIAKIFKVLSNKPVYVTGKFSSNSGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIDSVEFQRYGGAQGAGVTRNFDLCVAPKSVAGEVTKPYIFSGIDRSEYTSLYSFLSTKKLRIKNIKQNGND---------------GSMLQLGDLDD--HDPYKAALDDDQGDXXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXXERPKSSKKKKEAAVPXXXXXXXXXQRAKAVSGGAPSKPPAKKKQKKDPNAPKGASSAFMQFSSAKRAEVKAAQPELKTTEISKVLGERWGKMDAEARAPYTDKAYRDKERYKREMEKY 1878
IG+ GHS+G+ + L W SA D SS++ + T+ A W F H+R+ + P +R DGF A + + L +L D+ L+K +++ G ++G ++ D + F + + N+K++SQCV+PG + N++E+QFHESDA + D LVAIR +P + D D E +PAE Q +++ ANI G V+VE E +GTF PRGRY+IE+Y F+RM G++YDYKI+Y+DIS+LFLL KPDE ++AFV++LDKPIRQGQQ+YQ+LV++TTKD AE+ VN+ + L+++YNG+L M G L NL+AK FK+++ K V++ GKF++ + VKCAL A+EGHLYPL K FIFIHKPT ++ FD+++SVEFQRY G QG+ TRNFDLCV+ + TK YIFSGIDRS+YT LY+FLS KK++IKN++ N D G G++++ D D++ + + KS+K P XXX K KKK DP APK SA+ F +A R ++K P+ E+S + G+ W K+ E + Y A D R+KREM Y
Sbjct: 10 IGLHGHSVGTFTADPDGLRWKSAVMGGGDNDDISSSRVLPAKTLVAAKWTVFGRSGHVRVRSKASDPVNAELRFDGFPAADFDRLRDVLKRLFDVDLTKHAMSSAGTSFGLTDIEDGNMVFRQCILEDADEEGEEFEPRDGDEMMSANLKEISQCVLPGNNR-NEIEMQFHESDAVEAGTDQLVAIRFYIPPDPDADPSELDASTPAELFQQRIMKNANIKRTTGDVIVEIPEAKGTFLTPRGRYAIELYDTFLRMRGAKYDYKIKYDDISRLFLLPKPDEVHMAFVIALDKPIRQGQQRYQNLVMQTTKDHAELTVNLDEEVLEKEYNGDLQPVMYGALSNLVAKTFKIIAKKKVFIPGKFANANQQPCVKCALRASEGHLYPLEKQFIFIHKPTVLVRFDDVESVEFQRYAGGQGS--TRNFDLCVSLINSGDSSTKEYIFSGIDRSDYTGLYNFLSGKKIKIKNLQGNILDDAPSAPPVYNEDVIYGVPAGAGEMEESSEDESYGTNDEESVESESISGDDDDLGSGFDDSDLEEHRKAAKKSKPEDAKGKEKSNKXXXXXXXPEKEGSSXXXXXXXXXXXXXXDKVAPKKKXXXDPKAPKKGKSAYNYFLTAMRPKIKEQNPDATFGELSTLAGQAWKKVSNEEKEKYEKMAESDAARFKREMADY 676
BLAST of mRNA_H-paniculata_contig2733.7483.1 vs. uniprot
Match: A0A1E7FQX7_9STRA (FACT complex subunit SSRP1 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQX7_9STRA) HSP 1 Score: 385 bits (990), Expect = 1.450e-119 Identity = 285/630 (45.24%), Postives = 386/630 (61.27%), Query Frame = 1
Query: 100 KKVKWATVSHATWAQFAEYCHLRLFL-----QNDLPPVRLDGFSKAQYADV-DKFLSKLDIRLSKDRINAGGGNYGELEVLDNIVRFSS---ENRT---LFDLNIKDVSQCVMPGVKKSNDVELQFHESDATDQTEDTLVAIRVTLPEKDE----DTDEPSPAESLQMAVIERANIHDVKGKVLVEFNENQGTFDFPRGRYSIEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEAEIAVNMSADDLQQKYNGNLNSEMTGPLHNLIAKIFKVLSNKPVYVTGKFSSNSGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIDSVEFQRYGGAQGAGVTRNFDLCVAPKSVAGEVT--KPYIFSGIDRSEYTSLYSFLSTKKLRIKNIKQNGNDGSMLQLGDLDDHDP-YKAALDDDQGDXXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXXERPKSSKKKKEAAVPXXXXXXXXXQRAKAVSGGAPSKPPAKKKQKKDPNAPKGASSAFMQFSSAKRAEVKAAQPELKTTEISKVLGERWGKMDAEARAPYTDKAYRDKERYKREMEKYKSRTQEGANGRRKGKADG 1932
K + + A W F + HLR+ + +N +R DGF A + D+ D F DI +SK I++ G YG+ ++ + F E RT + L++ +VSQCV+PG + N+VELQF ESDA + D LV++R+ +P E D + AE LQ +++ ANI G V+VEF+ +G+F PRGRYSIE+Y F RM G +YDYKI+Y+DIS+LFLL KPD+ ++AFV++LDKPIRQGQQ+YQ+LVL+T KD E+ VN+ D L+++Y +L M G L NL+AK FKV++ K V++ GKFS+ + VKCAL ANEG LYPL K FIFIHKP +I F+E++SVEFQRY G QG+ TRNFDLCV K+ A ++ + Y+FSGIDRS+YT LY+FLSTK +RIKN+++ G++ Q+ + + D Y DD + XXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXX V PS +KKK KKDPN PK A SA+M +S+ R VK P K +++K++ + K+ + A + ++KERY REM+ Y G +G KG G
Sbjct: 1 KNIPKGNIEKAGWTVFGKSGHLRIGVIVKEGKNGPSELRFDGFPVASFDDLKDFFQENYDIEVSKHNISSAGTQYGQSKISGKKLLFQHCEFEVRTGDEMMSLDLGEVSQCVLPGNNR-NEVELQFPESDAIEANNDQLVSVRLYIPPDPEVDPSDKTAKTSAELLQHRIMQMANIRKTTGDVIVEFDLEKGSFLTPRGRYSIELYERFFRMRGQKYDYKIKYDDISRLFLLPKPDDVHMAFVIALDKPIRQGQQRYQYLVLQTNKDPDEVRVNLDEDTLKKEYGDDLQPIMRGSLSNLVAKTFKVIAKKKVFIPGKFSNANQQPCVKCALRANEGLLYPLEKQFIFIHKPPVLIRFNEVESVEFQRYAGGQGS--TRNFDLCVTLKASAASISNQQEYVFSGIDRSDYTGLYNFLSTKSIRIKNLQEIS--GAVEQVAPVYNEDEIYGGPADDMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKV-----------------ADIPSPTISKKKAKKDPNKPKQALSAYMVYSNLNRERVKKENPSAKFGDMAKLIAADYKKLSGDELADVEKRVIKEKERYAREMKDYIPSAGFGEDGVEKGATSG 608
BLAST of mRNA_H-paniculata_contig2733.7483.1 vs. uniprot
Match: A0A7S0TAB4_9STRA (FACT complex subunit SSRP1 n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0TAB4_9STRA) HSP 1 Score: 385 bits (990), Expect = 1.840e-118 Identity = 294/666 (44.14%), Postives = 394/666 (59.16%), Query Frame = 1
Query: 16 IGIQGHSLGSLQLSSEELVWTSA-------DKSSAKKVKWATVSHATWAQFAEYCHLRLFLQ------NDLPPVRLDGFSKAQYADV-DKFLSKLDIRLSKDRINAGGGNYGELEVLDNIVRFSS-------------ENRT---LFDLNIKDVSQCVMPGVKKSNDVELQFHESDATDQTEDTLVAIRVTLPEKDE----DTDEPSPAESLQMAVIERANIHDVKGKVLVEFNENQGTFDFPRGRYSIEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEAEIAVNMSADDLQQKYNGNLNSEMTGPLHNLIAKIFKVLSNKPVYVTGKFSSNSGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIDSVEFQRYGGAQGAGVTRNFDLCVAPKSVAGEVT--KPYIFSGIDRSEYTSLYSFLSTKKLRIKNIKQ-NGNDGSMLQLGDLD------DHDPYKAALDDDQGDXXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXXERP-KSSKKKKEAAVPXXXXXXXXXQRAKAVSGGAPSKPPAKKKQKKDPNAPKGASSAFMQFSSAKRAEVKAAQPELKTTEISKVLGERWGKMDAEARAPYTDKAYRDKERYKREMEKYK 1881
IG+ GHS+G+ + W SA + + + + + A W F + HLRL + N +R DGF A + ++ D F I +SK I++ G YG+ ++L + F E RT + L++ +VSQCV+PG + N+VELQF ESDA + D LV+IR +P E D S AE LQ +++ ANI G V+VEF+ +G+F PRGRYSIE+Y F RM G +YDYKI+Y+DIS+LFLL KPD+ ++AFV++LDKPIRQGQQ+YQ+LVL+T KD EI VN+ D L+++Y +L M G L NL+AK FKV++ K V++ GKFS+ + VKCAL ANEG LYPL K F+FIHKP +I F+E++SVEFQRY G QG+ TRNFDLCV+ K+ A V+ + Y+FSG+DRS+YT LY+FLSTK +RIKN+++ G + D D DH+ + + D+ + XXXXXXX XXXXXXXXXXXXXXXXXXXX R K XXXXXXXXX KKDPN PK A SAFM FS+A RA VK P+ K E++K+L + + + A K ++K+RY+REME YK
Sbjct: 10 IGLHGHSVGTFACGEAGVQWKSALYGRDDTGSGTTRNIPKSLIERAAWTVFGKSGHLRLKVAQQEGKANLHHEMRFDGFPVAAFDNLKDVFQDTYGIEVSKHNISSAGTQYGQSKILGKKLVFQHCILEDADEEGEEFEVRTGDEMMSLDLAEVSQCVLPGNNR-NEVELQFPESDAIEANNDQLVSIRFYIPPDPEVDPSDRTVKSSAELLQQRIMQMANIRKTTGDVIVEFDLEKGSFLTPRGRYSIELYERFFRMRGQKYDYKIKYDDISRLFLLPKPDDVHMAFVIALDKPIRQGQQRYQYLVLQTNKDPDEIRVNLDEDTLKKEYGDDLQPIMRGSLSNLVAKTFKVIAKKKVFIPGKFSNANQQPCVKCALRANEGLLYPLEKQFVFIHKPPVLIRFNEVESVEFQRYAGGQGS--TRNFDLCVSLKASAASVSNQQEYVFSGVDRSDYTGLYNFLSTKNIRIKNLQEIAGVQEKAAPVYDEDEIYGGPDHEMLEESEDESYDEAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDLEEARGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGSXXXXXXAKKDPNKPKRAQSAFMIFSNANRARVKEENPDAKFGEMAKLLSAEYKNLSKDELAELDKKVEKEKKRYEREMENYK 672
BLAST of mRNA_H-paniculata_contig2733.7483.1 vs. uniprot
Match: K0SUI2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUI2_THAOC) HSP 1 Score: 380 bits (976), Expect = 4.930e-116 Identity = 258/664 (38.86%), Postives = 376/664 (56.63%), Query Frame = 1
Query: 16 IGIQGHSLGSLQLSSEELVWTSA-----DKSSAKKVKWATVSHATWAQFAEYCHLRLFL-------QNDLPP-VRLDGFSKAQYADVDKFLSKL-DIRLSKDRINAGGGNYGELEVLDNIVRFSSENRT----------------LFDLNIKDVSQCVMPGVKKSNDVELQFHESDATDQTEDTLVAIRVTLPEKDE----DTDEPSPAESLQMAVIERANIHDVKGKVLVEFNENQGTFDFPRGRYSIEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEAEIAVNMSADDLQQKYNGNLNSEMTGPLHNLIAKIFKVLSNKPVYVTGKFSSNSGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIDSVEFQRYGGAQGAGVTRNFDLCVAPKSVAGEV--TKPYIFSGIDRSEYTSLYSFLSTKKLRIKNIKQNGNDGSMLQLGDLDDHDPYKAALDDDQGDXXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXXERPKSSKKKKEAAVPXXXXXXXXXQRAKAVSGGAPS-------KPPAKKKQKKDPNAPKGASSAFMQFSSAKRAEVKAAQPELKTTEISKVLGERWGKMDAEARAPYTDKAYRDKERYKREMEKY 1878
IG+ GH++G+ + ++W S+ D + + + ++S A W F + HLR+ Q LP +R DGF Y + + L L + L + +++ G ++G ++ + + F N + L++ +VSQCV+PG + N++E+QF ESD + D LVA+R +P + D D P+ AE+LQ +++ A++ G ++ EF+E +GTF PRGRYSIE+Y F+R+ G++YDYKI+Y+DIS+LFLL + D+ VAFV++LDKPIRQGQQ+Y LV++ TK+ +E+ +N+ L+++Y G + M G NL+AK FKV++ K V++ GKF++++ VKCAL ANEGHLYPL K FIFIHKP +I FDEI+SVEFQRY G QG+ TRNFDLCV+ S G+ TK Y FSGID+S Y +LYSFLS KK++IKN++ G + D+ DD++ D XXXXXXXX R K XXXXXXXXX +P +DPNAPK SA++ F+SAKR+E+K A P+ +ISK+LG+ + ++ + PY + A +DK RYKREME Y
Sbjct: 11 IGLYGHAVGTFSATRHGIMWKSSVMGNDDIETKRVLPRESISGALWTVFGKSGHLRVLTKAPREGEQTKLPAAMRFDGFPGTDYEAMSEALRDLFGVTLKRHSMSSAGSSWGNTDISNKHLVFRQCNLEDADEDGQEFEPRDGDEMMSLDLGEVSQCVLPGNNR-NEIEMQFLESDTVEAGTDQLVALRFYVPPDADADPTDKDAPTSAEALQSRIMQIASVKKTSGSIIAEFDEGKGTFLTPRGRYSIELYDSFLRLRGAKYDYKIKYDDISRLFLLPRQDDMTVAFVIALDKPIRQGQQRYNMLVMQCTKEHSELNINLDEATLEKEYGGQIEQHMNGSFSNLVAKTFKVITRKKVFIPGKFANSNQQACVKCALRANEGHLYPLEKQFIFIHKPAVLIRFDEIESVEFQRYAGGQGS--TRNFDLCVSLHSTPGDSASTKEYTFSGIDKSNYAALYSFLSGKKIKIKNLEGVGEEPKKPGAPRYDER-----MSDDEESDDSDFDENAPKSDDSXXXXXXXXDLGSVVSDDSDLAEHRKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSXXXXXXRDPNAPKAPKSAYVFFTSAKRSEIKEANPDAGFGDISKLLGKAYKELSDAEKEPYDEMARKDKARYKREMEDY 666
BLAST of mRNA_H-paniculata_contig2733.7483.1 vs. uniprot
Match: A0A448Z7B6_9STRA (FACT complex subunit SSRP1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7B6_9STRA) HSP 1 Score: 379 bits (972), Expect = 8.190e-116 Identity = 286/673 (42.50%), Postives = 398/673 (59.14%), Query Frame = 1
Query: 16 IGIQGHSLGSLQLSSEELVW---------TSADKSSAKKVKWATVSHATWAQFAEYCHLRLFLQ------NDLPPVRLDGFSKAQYADV-DKFLSKLDIRLSKDRINAGGGNYGELEVLDNIVRFSS----------------ENRTLFDLNIKDVSQCVMPGVKKSNDVELQFHESDATDQTEDTLVAIRVTLPEKDE----DTDEPSPAESLQMAVIERANIHDVKGKVLVEFNENQGTFDFPRGRYSIEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEAEIAVNMSADDLQQKYNGNLNSEMTGPLHNLIAKIFKVLSNKPVYVTGKFSSNSGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIDSVEFQRYGGAQGAGVTRNFDLCVA--PKSVAGEVTKPYIFSGIDRSEYTSLYSFLSTKKLRIKNIKQNGNDGSMLQLGDLDDHDPYKAALDDDQGDXXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXXERP--------------KSSKKKKEAAVPXXXXXXXXXQRAKAVSGGAPSKPPAKKKQKKDPNAPKGASSAFMQFSSAKRAEVKAAQPELKTTEISKVLGERWGKMDAEARAPYTDKAYRDKERYKREMEKY 1878
IG+ GHS+G+ + + W T +S + V ++ A W+ F + HLRL ++ N +R DGF + Y + D F + I L K +++ G YG ++ + F + + L++ +VSQCV+PG + N+VELQF ESDA + D LV++R +P E D S AE LQ +++ ANI G V+VEF+ +G+F PRGRYSIE+Y F RM G +YDYKI+Y+DIS+LFLL KPD+ ++AFV++LDKPIRQGQQ+YQ+LVL+T KD E+ VN+ D L+++Y +L M G L NL+AK FK+++ K V++ GKFS+ + VKCAL ANEG LYPL K F+FIHKP +I F+E++SVEFQRY G QG+ TRNFDLCV+ P + + + Y+FSG+DRS+Y LY+FLSTKK+RIKN+++ G G Q + + D D + +XXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXX KS +K + XXXX + K V P KK KKDPN PK ++AFM FS+ R + P+L +++K++G+++ ++ E A K +DK RY+REM+ Y
Sbjct: 14 IGLHGHSVGTFACTDAGIQWKSSLYGREDTGGLSASTRNVPKDSIEKAGWSVFGKSGHLRLNMEPKEGSSNTQHEMRFDGFPVSAYETMKDIFQASYGIELLKLNMSSAGTQYGRSKISGKKLVFRHCVLEDADEEGEEFEVRDGDEMMSLDLTEVSQCVLPGNNR-NEVELQFPESDAVEANNDQLVSVRFFIPPDPEVDPSDKTIKSSAELLQQRIMQMANIRKTTGDVIVEFDLEKGSFLTPRGRYSIELYERFFRMRGQKYDYKIKYDDISRLFLLPKPDDVHMAFVIALDKPIRQGQQRYQYLVLQTNKDPDEVRVNLDEDTLKKEYGDDLQPIMRGSLSNLVAKTFKIIAKKKVFIPGKFSNANQQPCVKCALRANEGLLYPLEKQFVFIHKPPVLIRFNEVESVEFQRYAGGQGS--TRNFDLCVSLKPNAPSAGNQQEYVFSGVDRSDYAGLYNFLSTKKIRIKNLQEIG--GVQEQAVPVYNEDEIYGGPDHEMEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEARGGSGSKSKRKSNXXXLIEDDLPXXXXGKKKVVET-----KPVSKKLKKDPNKPKQVTTAFMIFSNTNRERFRTENPDLNFGDLAKLIGKKYKELSKEELAELEKKVEKDKLRYEREMKNY 676
BLAST of mRNA_H-paniculata_contig2733.7483.1 vs. uniprot
Match: W7TS58_9STRA (FACT complex subunit SSRP1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS58_9STRA) HSP 1 Score: 370 bits (949), Expect = 6.070e-114 Identity = 266/655 (40.61%), Postives = 377/655 (57.56%), Query Frame = 1
Query: 7 FPKIGIQGHSLGSLQLSSEELVWTSADKSSAKKVKWATVSHATWAQFAEYCHLRLFLQNDLPPVRLDGFSKAQYADV-DKFLSKLDIRLSKDRINAGGGNYGELEVLDNIVRFSSENRTLFDLNIKDVSQCVMPGVKK-SNDVELQFHESDATDQTEDTLVAIRVTLPEKDEDTDEPSPAESLQMAVIERANIHDVKGKVLVEFNENQGTFDFPRGRYSIEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEAEIAVNMSADDLQQKYNGNLNSEMTGPLHNLIAKIFKVLSNKPVYVTGKFSSNSGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIDSVEFQRYGGAQGAGVTRNFDLCVAPKSVAGEVTKPYIFSGIDRSEYTSLYSFLSTKKL------------RIKNIKQNGNDGSMLQLGDLDDHDPYKAALDDDQGDXXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXXERPKSSKKKKEAAVPXXXXXXXXXQRAKAVSGGAPSKPPAKKKQKK---------DPNAPKGASSAFMQFSSAKRAEVKAAQPELKTTEISKVLGERWGKMDAEARAPYTDKAYRDKERYKREMEKYKSRTQEGA 1902
F IG+ G S+G+L + + L W S+AK V+ + A+W+ F ++ HLRLFL+N +R DGF + + V + F S + L ++ +N+GG NYG+L DN + S E++ + +L + VSQCV+PG N+VELQF E+DA D+ EDTLV +R +P +E+ D AE+ Q V+ R + G LV F E++G F +PRGRY I +Y++ R+HG++YD+K+ Y+DI FLLE+PD R+ AFV+ L KPIRQGQQ+Y +LVL+T +E+ VNM+ ++L++KY L M GP+H+L+AK FK+LS K VY + +F S + VKC+L A+EG LYPL+K+F+FI+KPT I F +I+SV F R GGA GVTR FDL V + + G+V + YIF+ I++ E+ +L +L K+ +I + + +G YK ++ G XXXXXXXXXX XXXXX E+ XXXXXXXXX G + K+K DPNAPK A SA+M F+ A R VKA QP LK TEISKV+GERW + AE + + D+A K RY E+ YK++ +E A
Sbjct: 7 FENIGLSGQSVGTLTFTGKGLEWRGP--SNAKTVQAKDILRASWSVFGKWGHLRLFLKNG-KALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDD---GAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRW-AFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGA--VGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEEEGGXXXXXXXXXXXSYKG---EESGSXXXXXXXXXXXXXXXXSSGAEMVEESDLEEMTGIKKEKXXXXXXXXXXXXXXXXXXXXXXXXXSDAGTGGKKRKGKKEKXXXXXXXXXXXXDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKAKKKEEA 649 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2733.7483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2733.7483.1 >prot_H-paniculata_contig2733.7483.1 ID=prot_H-paniculata_contig2733.7483.1|Name=mRNA_H-paniculata_contig2733.7483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=653bp MNFPKIGIQGHSLGSLQLSSEELVWTSADKSSAKKVKWATVSHATWAQFAback to top mRNA from alignment at H-paniculata_contig2733:4190..14220+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2733.7483.1 ID=mRNA_H-paniculata_contig2733.7483.1|Name=mRNA_H-paniculata_contig2733.7483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10031bp|location=Sequence derived from alignment at H-paniculata_contig2733:4190..14220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2733:4190..14220+ >mRNA_H-paniculata_contig2733.7483.1 ID=mRNA_H-paniculata_contig2733.7483.1|Name=mRNA_H-paniculata_contig2733.7483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3918bp|location=Sequence derived from alignment at H-paniculata_contig2733:4190..14220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |