mRNA_H-paniculata_contig2732.7482.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2732.7482.1
Unique NamemRNA_H-paniculata_contig2732.7482.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2732.7482.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.270e-13
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:   58 QSQSIARGVRAPVPGGYAFNSAQERLWGLFSRHTTITLAILYLVYSSVSTTVLRTFACMRLMEVNEEYLTADFR 279
            ++QS+   +RA    G   N  QERLWGLF+RHTTI L +LYLVY+ +ST V +TF+C  L E+ + YL ADFR
Sbjct: 1163 RAQSVRNLLRAKS--GQQKNPEQERLWGLFARHTTIMLIVLYLVYTQISTVVFQTFSCEDLPEIGKSYLRADFR 1234
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BLAST of mRNA_H-paniculata_contig2732.7482.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.130e-12
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:  115 NSAQERLWGLFSRHTTITLAILYLVYSSVSTTVLRTFACMRLMEVNEEYLTADF 276
            N  QERLWGLF+RHTT+ L +LYLVY+ +ST V +TFAC  L E+ + YL ADF
Sbjct: 1413 NPEQERLWGLFARHTTMMLIVLYLVYTQISTVVFQTFACEHLPEIGKRYLRADF 1466
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2732.7482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G119_ECTSI1.270e-1352.70Asn/thr-rich large protein family protein n=1 Tax=... [more]
A0A6H5K4A5_9PHAE1.130e-1261.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2732contigH-paniculata_contig2732:16810..19104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size280
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2732.7482.1prot_H-paniculata_contig2732.7482.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2732 16810..19103 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.391265-CDS-H-paniculata_contig2732:16809..169351622929824.391265-CDS-H-paniculata_contig2732:16809..16935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 16810..16935 +
1691481027.5953863-CDS-H-paniculata_contig2732:16809..169351691481027.5953863-CDS-H-paniculata_contig2732:16809..16935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 16810..16935 +
1622929824.4106884-CDS-H-paniculata_contig2732:17454..175381622929824.4106884-CDS-H-paniculata_contig2732:17454..17538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 17455..17538 +
1691481027.6054075-CDS-H-paniculata_contig2732:17454..175381691481027.6054075-CDS-H-paniculata_contig2732:17454..17538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 17455..17538 +
1622929824.4269612-CDS-H-paniculata_contig2732:19034..191031622929824.4269612-CDS-H-paniculata_contig2732:19034..19103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 19035..19103 +
1691481027.6137612-CDS-H-paniculata_contig2732:19034..191031691481027.6137612-CDS-H-paniculata_contig2732:19034..19103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 19035..19103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2732.7482.1

>prot_H-paniculata_contig2732.7482.1 ID=prot_H-paniculata_contig2732.7482.1|Name=mRNA_H-paniculata_contig2732.7482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
SRSRSIDKIREKDTLSDGEQSQSIARGVRAPVPGGYAFNSAQERLWGLFS
RHTTITLAILYLVYSSVSTTVLRTFACMRLMEVNEEYLTADFR
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mRNA from alignment at H-paniculata_contig2732:16810..19104+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2732.7482.1 ID=mRNA_H-paniculata_contig2732.7482.1|Name=mRNA_H-paniculata_contig2732.7482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2295bp|location=Sequence derived from alignment at H-paniculata_contig2732:16810..19104+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCGCTCTCGCAGCATAGATAAGATCAGGGAGAAGGATACACTCTCCGA
TGGCGAGCAGTCCCAGAGTATAGCTCGCGGCGTTCGGGCGCCTGTACCTG
GCGGTTATGCGTTCAATAGTGCCCAGGTAATTGTAATACTACCTTCAACA
ATAGCGTGTCGCCTTGACAAACACATCGATCGATATGTCCTAACCGTTGT
CATACTGCAGGCGTTCATGAGCCAGAGTCGATCAGCAGTGCAATGTTCAA
AAGTGAATGTATGGCATTGGTCGATGTGAAGACATTCATTGGTCCAGGAG
TACTCAAGGTAAAAACATACAGGAGGGAAATAGAACGGGGGGGAGATGAG
AGGCATTTGCAAACTGTCACCCTCGTCTCATTCGCGACACACCTTACGGC
ACGAGTTCAGGGCTTCATGTATAAGATGAGATGCATCACGTCGTACAGGG
GCGTCTTGCACTTGTGGCGTACGCCGACGAAGCTCTAATCACCAATCGAC
TCGCAATCCCAGTAATGAGGTGGTGTGCTTACTTCTCTTTCCTCCCTCCG
CCACCGGTTGTCTTTGCTGTCGATTCCGCAAACGGACCGCGCACCCGAAC
ACACGTCATGTTCCAACGCAAACGTGTCTACGGTCGTGACATCAGGAGCG
TCTATGGGGTCTGTTTTCTCGCCACACGACTATCACCTTGGCTATACTGT
ACTTGGTCTACTCATCGGTGTCCACAACGGTGAGCGAGCTCAACAATTTT
GGAAATGCCTTGGGAGAACCCATTTTTAATACCGTTTACATTCAGTGCTG
TACAAAAGCACAGCTTCGGAGCGCGTCATGTGAAGAATACTGTTATGGGT
ATTCGGCAAATGTAGCAGTGGTGGCGCTGGTAGCTGTTACGCTGACCTGT
CAGTATTGGATGTACACACAAAGGACTTAGCTTCTATTGATCGTGGATGA
GAAGGTGAAGAGAAGAGTGAGACCCAGGAGGTCATGTACGGCACCAATAT
ACTGACAGCTACTACGACTCGAACCGCTACCAGTCATGCCAAAATGTCCT
TAAACCATGATCCATACATTCCACGAATAATTTTGTAATGCCAATGAACA
ATCTCTAAAAGAAATAGATGAACACATTATTTCTTGACAGTGATACCCTC
TACAGACGAGGTCCCCTTTTGTCGATCACGAAAAATATAGATGGCGTACG
CTAGCATCAAGTCGTCCCAATTGCAACCAAATGTAAGCCACTGTTTATTT
GTGGAGATCACATACACTTCATACGATGCGTTTTTTGCAACTTTTTAGTC
CAGCAGAGTGATGCTTCGTACAGCCGTTCACGTCCTATACACCATCGACT
GATGATTCCGAACTCTTTGTTGCGCATAATTTGGCGCTTGTCGTAGGTGC
GTTGAAGTCTGATCCCGGGAATCCACAAACCCGTTTCACACGCGACCGAC
GATTGAAGAGTAAGCGGTGTTGGATGTTCTTTGCTGTTGAAAGCTGACAC
GGCTTCCCCCTTAAACTCTCTTCCTCGGATTCTAGACGTCCGCTGAAACA
TGATCTTCTTTTCTTTTATTATTATATTAACCTCGTCTTGCCCTCTCTGG
TAATAACCTCTACTGCTACAGTGATCCGTCTACTGATCTCACAGCCTAGA
AACCTTGGTTTGATCGGTTGGAAATGGAAATGAGCGAGGTGGGGCTCTCC
TTCATCGATTTATAAACCTATGGAACAATATCTCCCAAACATGCAAAGAC
TCAAACGTCCCCATCATTCCTTGATCGTTATTGTGAGGACTTTCCCTAAT
TCTAGAAATGTAACAGCATGCGGCGAAAATTATATTGTATTTCTCCGCAT
CGTAATTGTGCTACACTTATTCATCAAAGCATGATACTGTATTTGCACTA
CTGCTGTTCCTAATAACAATCCCAGTATTTAGTAGACCATACAACTCCAA
CACCCCCATTTGCTCTACAGAGTGATACTTCGGTGAAGTTTTTCCTTCAT
ACGGTATTTGACTTCATTCAACAAAATTTAATAGCATACAACTCCATCAA
GCGGAACCGCAATCAATCGACTACTAATCGTTACTCGGAGATGTACGGTT
GATCGCCGGGTCGGAGGTACTGTTTGTCCGTCGAGAACGTGGTGTAGAAC
ATGGTTTGACCTAACCAGCGTATTCCACTTGGGGAATGATCGTGGGGCGC
GGGAAACTCATGGATCACTCGGCAGGTGCTCCGAACCTTCGCTTGTATGC
GCTTGATGGAAGTGAATGAAGAGTACTTGACGGCAGATTTCAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2732:16810..19104+

>mRNA_H-paniculata_contig2732.7482.1 ID=mRNA_H-paniculata_contig2732.7482.1|Name=mRNA_H-paniculata_contig2732.7482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig2732:16810..19104+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCGCTCTCGCAGCATAGATAAGATCAGGGAGAAGGATACACTCTCCGA
TGGCGAGCAGTCCCAGAGTATAGCTCGCGGCGTTCGGGCGCCTGTACCTG
GCGGTTATGCGTTCAATAGTGCCCAGAGCCGCTCTCGCAGCATAGATAAG
ATCAGGGAGAAGGATACACTCTCCGATGGCGAGCAGTCCCAGAGTATAGC
TCGCGGCGTTCGGGCGCCTGTACCTGGCGGTTATGCGTTCAATAGTGCCC
AGGAGCGTCTATGGGGTCTGTTTTCTCGCCACACGACTATCACCTTGGCT
ATACTGTACTTGGTCTACTCATCGGTGTCCACAACGGAGCGTCTATGGGG
TCTGTTTTCTCGCCACACGACTATCACCTTGGCTATACTGTACTTGGTCT
ACTCATCGGTGTCCACAACGGTGCTCCGAACCTTCGCTTGTATGCGCTTG
ATGGAAGTGAATGAAGAGTACTTGACGGCAGATTTCAGGGTGCTCCGAAC
CTTCGCTTGTATGCGCTTGATGGAAGTGAATGAAGAGTACTTGACGGCAG
ATTTCAGG
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