mRNA_H-paniculata_contig2732.7480.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2732.7480.1
Unique NamemRNA_H-paniculata_contig2732.7480.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2732.7480.1 vs. uniprot
Match: D7G5M2_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M2_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.280e-9
Identity = 29/62 (46.77%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:   25 MDWQLLPSSGLLFPGDTIPIYVVSSPTKTYDGEATVTFRANAMGFSPDSMVSKSSADVVMET 210
            M+W + PS+GLL PG +I ++VV+ P++ ++GEATV+F+A+ M   P S+V+K++A VV++T
Sbjct:  236 MEWTVFPSTGLLLPGRSITLHVVTLPSEDFNGEATVSFQADGMS-PPASLVAKAAAAVVVQT 296
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BLAST of mRNA_H-paniculata_contig2732.7480.1 vs. uniprot
Match: D7FXY9_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.580e-8
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   28 DWQLLPSSGLLFPGDTIPIYVVSSPTKTYDGEATVTFRANAM-GFSPDSMVSKSSA-------DVVMETAFYHCEAGNVW 243
            DW + PS+GLL PG+++ +++VS P   ++G A +T RAN +   S  + +  S+A       DV +   +Y C+ GN W
Sbjct:  754 DWTVFPSTGLLLPGESVRLHLVSQPNDAFNGLANITIRANDITALSTTASILASNAEPQSEGGDVTISVEYYFCDEGNFW 833
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BLAST of mRNA_H-paniculata_contig2732.7480.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.590e-8
Identity = 28/62 (45.16%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   25 MDWQLLPSSGLLFPGDTIPIYVVSSPTKTYDGEATVTFRANAMGFSPDSMVSKSSADVVMET 210
            M+W + PS+GLL PG +I ++VV+ P   ++GEATV+F+A+ M   P S+V++++A VV++T
Sbjct:  852 MEWTVFPSTGLLLPGRSITLHVVTLPLDDFNGEATVSFQADGMS-PPASLVAEAAAAVVVQT 912
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BLAST of mRNA_H-paniculata_contig2732.7480.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.930e-7
Identity = 27/80 (33.75%), Postives = 44/80 (55.00%), Query Frame = 1 
Query:   28 DWQLLPSSGLLFPGDTIPIYVVSSPTKTYDGEATVTFRAN---AMGFSPDSMVSKSS-----ADVVMETAFYHCEAGNVW 243
            DW + PS+GLL PG+++ + +VS P   ++G A +T RAN   A+  +   + S +       DV +   +Y C+ GN W
Sbjct:  718 DWTVFPSTGLLLPGESVRLRLVSQPNDAFNGLANITVRANDITALSTTASILASNTEPQSEGGDVTVGVEYYFCDEGNFW 797
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BLAST of mRNA_H-paniculata_contig2732.7480.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 6.740e-7
Identity = 26/80 (32.50%), Postives = 41/80 (51.25%), Query Frame = 1 
Query:   28 DWQLLPSSGLLFPGDTIPIYVVSSPTKTYDGEATVTFRAN--------AMGFSPDSMVSKSSADVVMETAFYHCEAGNVW 243
            DW + PS+GLL PG+++ + +VS P   ++G A +T RAN        A   + D+       DV +    Y C+ G+ W
Sbjct:  938 DWTVFPSTGLLLPGESVRLQLVSQPNDAFNGFANITVRANDITALSTTASILASDAEPQSEGGDVTVSVEHYLCDEGSFW 1017
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BLAST of mRNA_H-paniculata_contig2732.7480.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 8.180e-6
Identity = 21/43 (48.84%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   25 MDWQLLPSSGLLFPGDTIPIYVVSSPTKTYDGEATVTFRANAM 153
            M+W + PS+GLL PG +I ++VV+ P++ ++GEATV+F+A+ M
Sbjct:  502 MEWTVFPSTGLLLPGRSITLHVVTLPSEDFNGEATVSFQADGM 544
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2732.7480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G5M2_ECTSI1.280e-946.77Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
D7FXY9_ECTSI1.580e-835.00Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G0B0_ECTSI1.590e-845.16Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G119_ECTSI1.930e-733.75Asn/thr-rich large protein family protein n=1 Tax=... [more]
A0A6H5K4A5_9PHAE6.740e-732.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0A8_ECTSI8.180e-648.84Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2732contigH-paniculata_contig2732:10310..10971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.2124045-CDS-H-paniculata_contig2732:10309..103831622929824.2124045-CDS-H-paniculata_contig2732:10309..10383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 10310..10383 +
1691481027.516071-CDS-H-paniculata_contig2732:10309..103831691481027.516071-CDS-H-paniculata_contig2732:10309..10383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 10310..10383 +
1622929824.227097-CDS-H-paniculata_contig2732:10799..109711622929824.227097-CDS-H-paniculata_contig2732:10799..10971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 10800..10971 +
1691481027.5345602-CDS-H-paniculata_contig2732:10799..109711691481027.5345602-CDS-H-paniculata_contig2732:10799..10971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 10800..10971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2732.7480.1prot_H-paniculata_contig2732.7480.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2732 10310..10971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2732.7480.1

>prot_H-paniculata_contig2732.7480.1 ID=prot_H-paniculata_contig2732.7480.1|Name=mRNA_H-paniculata_contig2732.7480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MDGDVLSFMDWQLLPSSGLLFPGDTIPIYVVSSPTKTYDGEATVTFRANA
MGFSPDSMVSKSSADVVMETAFYHCEAGNVWG
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mRNA from alignment at H-paniculata_contig2732:10310..10971+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2732.7480.1 ID=mRNA_H-paniculata_contig2732.7480.1|Name=mRNA_H-paniculata_contig2732.7480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=662bp|location=Sequence derived from alignment at H-paniculata_contig2732:10310..10971+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGGAGATGTATTGTCGTTCATGGATTGGCAACTGTTACCATCCTC
GGGCTTGCTTTTTCCTGGAGACACGTGAGCAATCAAACAATTTCAGTGAG
AGGTATTTTCCGTCGTTAGTGTGACACGGTGTTACTTAAGAGCCGCCAAC
CTCGCGACAAGAATTGATGGTAAGTGTTCACGGCCAAGTGTGTGCAATGT
TCTATCGGCCGTCTTTTTTTTCTAACTGAATTCGTGCCTGATTTGCCTCG
TTGTAGCATTCTAAATATTTTCTCTATCCAGAATTTTGTGTCTACTGCTT
CTGTGTAAAGCACTTTTCTTGGCGATCGGGTGAACACTAGACACTAAACA
CGTTCAGAATATGCATTAGATTTTTGCTCGATACCTCAGCTTTTCACGAT
CTTGACTATTAGTCAGCCATGATCGATTGCTCATGCTCGACCTAACACCC
CTCATTCTTTGTGTACCTGCTTTTTGTTCACTGTGGGCAGTATCCCAATT
TACGTCGTGAGTAGCCCAACCAAGACGTACGACGGTGAAGCCACTGTCAC
CTTCCGTGCAAATGCGATGGGCTTCTCCCCGGACAGCATGGTGTCCAAAT
CCTCCGCTGATGTAGTCATGGAAACGGCTTTTTACCACTGTGAAGCCGGG
AATGTCTGGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig2732:10310..10971+

>mRNA_H-paniculata_contig2732.7480.1 ID=mRNA_H-paniculata_contig2732.7480.1|Name=mRNA_H-paniculata_contig2732.7480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig2732:10310..10971+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGGAGATGTATTGTCGTTCATGGATTGGCAACTGTTACCATCCTC
GGGCTTGCTTTTTCCTGGAGACACATGGATGGAGATGTATTGTCGTTCAT
GGATTGGCAACTGTTACCATCCTCGGGCTTGCTTTTTCCTGGAGACACTA
TCCCAATTTACGTCGTGAGTAGCCCAACCAAGACGTACGACGGTGAAGCC
ACTGTCACCTTCCGTGCAAATGCGATGGGCTTCTCCCCGGACAGCATGGT
GTCCAAATCCTCCGCTGATGTAGTCATGGAAACGGCTTTTTACCACTGTG
AAGCCGGGAATGTCTGGGGTTATCCCAATTTACGTCGTGAGTAGCCCAAC
CAAGACGTACGACGGTGAAGCCACTGTCACCTTCCGTGCAAATGCGATGG
GCTTCTCCCCGGACAGCATGGTGTCCAAATCCTCCGCTGATGTAGTCATG
GAAACGGCTTTTTACCACTGTGAAGCCGGGAATGTCTGGGGT
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