mRNA_H-paniculata_contig2732.7479.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2732.7479.1
Unique NamemRNA_H-paniculata_contig2732.7479.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2732.7479.1 vs. uniprot
Match: D7G5M2_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M2_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 4.570e-6
Identity = 30/64 (46.88%), Postives = 37/64 (57.81%), Query Frame = 3 
Query:  219 AREASDAGIKPDADSIINVKLMCSRGDDEADDGEDIMSR--PCSDGSLCMEGDLGVYCECYVPE 404
            A  AS A + P A S+INV + C        DG    S   PCS+GS C++GDLGVYC+CY  E
Sbjct:   91 AEAASTANVIPTAHSLINVNVTC--------DGWMPFSSTPPCSEGSPCIDGDLGVYCQCYTRE 146
[Close]
BLAST of mRNA_H-paniculata_contig2732.7479.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 6.550e-6
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 3 
Query:  219 AREASDAGIKPDADSIINVKLMCSRGDDEADDGEDIMSR--PCSDGSLCMEGDLGVYCECYVPEITGSE 419
            A  AS+AG  P A S+I+V + C        DG    S   PCS+GS C++GDLGVYC+CY  E + +E
Sbjct:  707 AEAASEAGDIPTAHSLISVNVTC--------DGWMPFSSTPPCSEGSPCIDGDLGVYCQCYTRESSIAE 767
[Close]
BLAST of mRNA_H-paniculata_contig2732.7479.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.190e-5
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 3 
Query:  219 AREASDAGIKPDADSIINVKLMCSRGDDEADDGEDIMSR--PCSDGSLCMEGDLGVYCECYVPEITGSE 419
            A+ AS A   P A S+INV + C        DG    S   PCS+GS C++GDLGVYC+CY  E + +E
Sbjct:  357 AKAASTANEIPTAHSLINVNVTC--------DGWMPFSSTSPCSEGSPCIDGDLGVYCQCYTRESSIAE 417
[Close]
BLAST of mRNA_H-paniculata_contig2732.7479.1 vs. uniprot
Match: A0A6H5JH31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH31_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 2.280e-5
Identity = 30/69 (43.48%), Postives = 40/69 (57.97%), Query Frame = 3 
Query:  219 AREASDAGIKPDADSIINVKLMCSRGDDEADDGEDIMSR--PCSDGSLCMEGDLGVYCECYVPEITGSE 419
            A+ AS A   P A S++NV + C        DG    S   PCS+GS C++GDLGVYC+CY  E + +E
Sbjct:  120 AKAASTANEIPTAHSLMNVNVTC--------DGWMRFSSTPPCSEGSPCIDGDLGVYCQCYTRESSIAE 180
[Close]
BLAST of mRNA_H-paniculata_contig2732.7479.1 vs. uniprot
Match: D7FXY9_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 4.120e-5
Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 3 
Query:  219 AREASDAGIKPDADSIINVKLMCSRGDDEADDGEDIMSRPCSDGSLCMEGDLGVYCECY 395
            A EAS+    P ADS IN+ L C+     +         PC +GS C+EGDLGVYCE Y
Sbjct:  617 AEEASEMLQLPSADSFINLNLTCNSSSAVS---------PCGEGSWCLEGDLGVYCEHY 666
[Close]
BLAST of mRNA_H-paniculata_contig2732.7479.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 7.730e-5
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 3 
Query:  219 AREASDAGIKPDADSIINVKLMCSRGDDEADDGEDIMSR--PCSDGSLCMEGDLGVYCECYVPEITGSE 419
            A+ AS A   P A+ ++NV + C        DG    S   PCS+GS C++GDLGVYC+CY  E + +E
Sbjct:  794 AKAASTANEIPTAEPLMNVDVTC--------DGWMRFSSTPPCSEGSPCIDGDLGVYCQCYTRESSIAE 854
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2732.7479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G5M2_ECTSI4.570e-646.88Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
D7G0B0_ECTSI6.550e-644.93Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G0A8_ECTSI1.190e-544.93Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JH31_9PHAE2.280e-543.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXY9_ECTSI4.120e-545.76Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JRA9_9PHAE7.730e-542.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2732contigH-paniculata_contig2732:9158..9576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size419
Cds size138
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.1422412-UTR-H-paniculata_contig2732:9157..94381622929824.1422412-UTR-H-paniculata_contig2732:9157..9438Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2732 9158..9438 +
1691481027.4975078-UTR-H-paniculata_contig2732:9157..94381691481027.4975078-UTR-H-paniculata_contig2732:9157..9438Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2732 9158..9438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.1590564-CDS-H-paniculata_contig2732:9438..95761622929824.1590564-CDS-H-paniculata_contig2732:9438..9576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 9439..9576 +
1691481027.5074015-CDS-H-paniculata_contig2732:9438..95761691481027.5074015-CDS-H-paniculata_contig2732:9438..9576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2732 9439..9576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2732.7479.1prot_H-paniculata_contig2732.7479.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2732 9439..9576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2732.7479.1

>prot_H-paniculata_contig2732.7479.1 ID=prot_H-paniculata_contig2732.7479.1|Name=mRNA_H-paniculata_contig2732.7479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
MCSRGDDEADDGEDIMSRPCSDGSLCMEGDLGVYCECYVPEITGSE
back to top

mRNA from alignment at H-paniculata_contig2732:9158..9576+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2732.7479.1 ID=mRNA_H-paniculata_contig2732.7479.1|Name=mRNA_H-paniculata_contig2732.7479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=419bp|location=Sequence derived from alignment at H-paniculata_contig2732:9158..9576+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCCCTTCAACTTGGCGCAGTACACGCGCCGCCCTGCTCAGTAAGCTTC
GGCCCCAGGTGCTCCCTCAATTGGGGGACGATATTCCCGCATAACACGCG
CGTTCATTCTTGACCCCGTCTTTATTGCTTCAAGTATAGCAAATAATATA
TTACCTGTCACAGTTATACTGTTGATGTCTAGAGCCCTCTGTCGTTGATT
AATCCAGATGCTGCCCGCGCAAGAGAGGCATCGGACGCTGGAATCAAGCC
GGATGCCGACAGTATTATCAACGTAAAACTGATGTGCTCGAGAGGAGATG
ATGAAGCAGACGACGGAGAGGACATTATGTCTCGCCCCTGCAGCGATGGG
TCTCTATGCATGGAAGGCGACCTCGGGGTGTATTGCGAGTGTTACGTGCC
AGAGATTACGGGCAGTGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2732:9158..9576+

>mRNA_H-paniculata_contig2732.7479.1 ID=mRNA_H-paniculata_contig2732.7479.1|Name=mRNA_H-paniculata_contig2732.7479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig2732:9158..9576+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCTCGAGAGGAGATGATGAAGCAGACGACGGAGAGGACATTATGTC
TCGCCCCTGCAGCGATGGGTCTCTATGCATGGAAGGCGACCTCGGGGTGT
ATTGCGAGTGTTACGTGCCAGAGATTACGGGCAGTGAGATGTGCTCGAGA
GGAGATGATGAAGCAGACGACGGAGAGGACATTATGTCTCGCCCCTGCAG
CGATGGGTCTCTATGCATGGAAGGCGACCTCGGGGTGTATTGCGAGTGTT
ACGTGCCAGAGATTACGGGCAGTGAG
back to top