mRNA_H-paniculata_contig27318.7478.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27318.7478.1
Unique NamemRNA_H-paniculata_contig27318.7478.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27318.7478.1 vs. uniprot
Match: A0A6H5L430_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L430_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 4.950e-8
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = -3 
Query:  179 RNMAQV*KRAQKSLYAVETWDGRLGGWKAVDCSKLVPYAVKDINEW 316
            RNM  V K+ +   Y    WDG+ GGWKAV+C KLV +A+  +NEW
Sbjct:   26 RNMLDVWKQTRLGWYGDPEWDGQEGGWKAVNCGKLVEHAIGKMNEW 71
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BLAST of mRNA_H-paniculata_contig27318.7478.1 vs. uniprot
Match: A0A6H5KQG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQG8_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 6.360e-5
Identity = 19/50 (38.00%), Postives = 32/50 (64.00%), Query Frame = -3 
Query:  167 RNMAQV*KRAQKSLYAVETWDGRLGGWKAVDCSKLVPYAVKDINEWYRGR 316
            R   +V  + +K  +  + W G+ GGWKAV+CSKL+ +A+ + N+W + R
Sbjct:  388 RKRREVWVQIRKGWHGDKEWPGQEGGWKAVNCSKLIDHAIGETNKWVKDR 437
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27318.7478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L430_9PHAE4.950e-850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQG8_9PHAE6.360e-538.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27318contigH-paniculata_contig27318:2523..2843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.0938156-CDS-H-paniculata_contig27318:2522..28431622929824.0938156-CDS-H-paniculata_contig27318:2522..2843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27318 2523..2843 +
1691481027.4862916-CDS-H-paniculata_contig27318:2522..28431691481027.4862916-CDS-H-paniculata_contig27318:2522..2843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27318 2523..2843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27318.7478.1prot_H-paniculata_contig27318.7478.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27318 2523..2843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27318.7478.1

>prot_H-paniculata_contig27318.7478.1 ID=prot_H-paniculata_contig27318.7478.1|Name=mRNA_H-paniculata_contig27318.7478.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MSTNQRIPVCALSHRQKLWKIWRSDIKRLLEHRPITLNDSLVPGGTEILM
ARRLKSVHGTIRLCPSQRTVRVCYSLLLSNPPTAHPMSQPHTNSSEPAFK
PVPYCG*
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mRNA from alignment at H-paniculata_contig27318:2523..2843+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27318.7478.1 ID=mRNA_H-paniculata_contig27318.7478.1|Name=mRNA_H-paniculata_contig27318.7478.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig27318:2523..2843+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTACTAACCAGCGCATCCCCGTTTGCGCTCTCTCCCATCGCCAGAA
ACTCTGGAAAATTTGGAGAAGTGATATCAAGCGACTCCTAGAGCATCGCC
CCATCACCCTCAACGATAGCCTTGTACCCGGCGGCACTGAAATCTTGATG
GCCCGGCGCCTCAAGAGCGTCCACGGTACCATTCGTTTATGTCCTTCACA
GCGTACGGTACGAGTTTGCTACAGTCTACTGCTTTCCAACCCCCCAACCG
CCCATCCCATGTCTCAACCGCATACAAACTCTTCTGAGCCCGCTTTCAAA
CCTGTGCCATATTGCGGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig27318:2523..2843+

>mRNA_H-paniculata_contig27318.7478.1 ID=mRNA_H-paniculata_contig27318.7478.1|Name=mRNA_H-paniculata_contig27318.7478.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig27318:2523..2843+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTACTAACCAGCGCATCCCCGTTTGCGCTCTCTCCCATCGCCAGAA
ACTCTGGAAAATTTGGAGAAGTGATATCAAGCGACTCCTAGAGCATCGCC
CCATCACCCTCAACGATAGCCTTGTACCCGGCGGCACTGAAATCTTGATG
GCCCGGCGCCTCAAGAGCGTCCACGGTACCATTCGTTTATGTCCTTCACA
GCGTACGGTACGAGTTTGCTACAGTCTACTGCTTTCCAACCCCCCAACCG
CCCATCCCATGTCTCAACCGCATACAAACTCTTCTGAGCCCGCTTTCAAA
CCTGTGCCATATTGCGGGTAGATGTCTACTAACCAGCGCATCCCCGTTTG
CGCTCTCTCCCATCGCCAGAAACTCTGGAAAATTTGGAGAAGTGATATCA
AGCGACTCCTAGAGCATCGCCCCATCACCCTCAACGATAGCCTTGTACCC
GGCGGCACTGAAATCTTGATGGCCCGGCGCCTCAAGAGCGTCCACGGTAC
CATTCGTTTATGTCCTTCACAGCGTACGGTACGAGTTTGCTACAGTCTAC
TGCTTTCCAACCCCCCAACCGCCCATCCCATGTCTCAACCGCATACAAAC
TCTTCTGAGCCCGCTTTCAAACCTGTGCCATATTGCGGGTAG
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