mRNA_H-paniculata_contig273.7473.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig273.7473.1 vs. uniprot
Match: D7FNK0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK0_ECTSI) HSP 1 Score: 399 bits (1024), Expect = 4.850e-123 Identity = 367/581 (63.17%), Postives = 436/581 (75.04%), Query Frame = 1
Query: 1 KPAWVEDPYVFRVKKWIRAAGRKRDHERVVMYLRKFQDGRTLKGKSVAVHVYNAALKALDECHRWQLALTVFREMQAAGVAADRNSYFFTISACSRRGEARTALQLLSEMTA-------------------AHARLE----APAPDLLLYGVAVKACAHGRAWRQALRLVEDMSAVGVKPNIVVLNTALSACAKCGQTTRATDLLRDMEEMHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAVLSLMRRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKELSNSSDTSLVXXXXXXXXXXXXXXXXXXXXXXXXXXXEMKALELRPDVVTYSTVIRACERALPPQPDVALRLLSHMETAGVKPNNTTFVSVLLSLGRAGRCLECLEVLKGMSARGTPPDAVSCQTVLRVLDRWDRPKEAFRLFKRMQD--KGLATRPEVAEEAYCCGIRALERLGRWSSAVSLLEEWRKTDAAIRGATADPGKDAKYDQWYRALNLLAMGGSPGEFDPKTAR 1668
+P+WV+DP RVK W+R+A K DH RV MYLRK+++ + LKG+ + +YN AL+ALD C +W+LAL+VFREMQ+ GV DR+SYFF +SACS+RGEA+TAL LL+EM A + +E APAPDLLLY V +KACA G+ W+QA+RL++DMSA GV PN+VV+NTALSACAKCGQ +RAT LL++M+E + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AVL ++RR+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF EL S D SL XXXXXXXXXXX E KA LR T+IRACER++P QPDVAL+L+S ME GV+PNNTT+V V +SLGR+ R LECL++L+ M +GTPPDA+ VL+VLDRWD +EA LF+ M + + +A P +AEE YCCGIRALERLG+WS AV+LL++WR+ + D D YDQWYRAL LL+ GG P E D KT+R
Sbjct: 118 EPSWVQDPGESRVKMWMRSAASKGDHNRVAMYLRKYREAKVLKGELPRIALYNTALRALDRCKKWRLALSVFREMQSDGVDPDRDSYFFVMSACSKRGEAKTALALLAEMKARXXXXXXXXXXXXXXXXPGGYGEVEDEDGAPAPDLLLYAVVMKACAWGKRWQQAIRLLDDMSAAGVAPNVVVVNTALSACAKCGQVSRATQLLQEMQEKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLGMLRRKGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDELVASGDESLRXXXXXXXXXXXVFSDAGMLPRALELLEEAKAKRLRXXXXXXXTLIRACERSMPSQPDVALKLVSDMEAEGVRPNNTTYVGVAISLGRSARPLECLDLLRSMHGKGTPPDAICYLAVLKVLDRWDLAEEASLLFEEMVETIEQIALMPAIAEETYCCGIRALERLGKWSEAVALLDQWRQK------GSYDADNDRMYDQWYRALRLLSTGGLPEETDVKTSR 692
BLAST of mRNA_H-paniculata_contig273.7473.1 vs. uniprot
Match: A0A452XFJ6_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452XFJ6_AEGTS) HSP 1 Score: 60.1 bits (144), Expect = 4.840e-6 Identity = 39/140 (27.86%), Postives = 64/140 (45.71%), Query Frame = 1
Query: 148 HVYNAALKALDECHRWQLALTVFREMQAAGVAADRNSYFFTISACSRRGEARTALQLLSEMTAAH----ARLEAPAPDLLLYGVAVKACAHGRAWRQALRLVEDMSAVGVKPNIVVLNTALSACAKCGQTTRATDLLRDM 555
HV+N+ + A H +V++ MQ GV D SY + C E TA ++ EM +L D+ Y +K A + W+ A + +DM AVG + N+V ++ ++A A G A ++L +M
Sbjct: 17 HVFNSLMNA--NAHSMSYNFSVYKHMQKLGVRPDLASYNILLKTCCNAREFNTAQEIYEEMKKKEHDGILKL-----DVFTYSTMMKVFAEAKMWKMASNIKDDMRAVGARLNLVTWSSLINAYANSGLVDGAIEILEEM 149
BLAST of mRNA_H-paniculata_contig273.7473.1 vs. uniprot
Match: A0A452XFH4_AEGTS (PPR_long domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452XFH4_AEGTS) HSP 1 Score: 60.1 bits (144), Expect = 8.550e-6 Identity = 39/140 (27.86%), Postives = 64/140 (45.71%), Query Frame = 1
Query: 148 HVYNAALKALDECHRWQLALTVFREMQAAGVAADRNSYFFTISACSRRGEARTALQLLSEMTAAH----ARLEAPAPDLLLYGVAVKACAHGRAWRQALRLVEDMSAVGVKPNIVVLNTALSACAKCGQTTRATDLLRDM 555
HV+N+ + A H +V++ MQ GV D SY + C E TA ++ EM +L D+ Y +K A + W+ A + +DM AVG + N+V ++ ++A A G A ++L +M
Sbjct: 266 HVFNSLMNA--NAHSMSYNFSVYKHMQKLGVRPDLASYNILLKTCCNAREFNTAQEIYEEMKKKEHDGILKL-----DVFTYSTMMKVFAEAKMWKMASNIKDDMRAVGARLNLVTWSSLINAYANSGLVDGAIEILEEM 398
BLAST of mRNA_H-paniculata_contig273.7473.1 vs. uniprot
Match: A0A813HZR6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HZR6_POLGL) HSP 1 Score: 58.5 bits (140), Expect = 2.050e-5 Identity = 50/165 (30.30%), Postives = 73/165 (44.24%), Query Frame = 1
Query: 175 LDECHR---WQLALTVFREMQAA-GVAADRNSYFFTISACSRRGEARTALQLLSEMTAAHARLEAPAP-------------------------------DLLLYGVAVKACAHGRA-WRQALRLVEDMSAVG--VKPNIVVLNTALSACAKCGQTTRATDLLRDM 555
+ C R WQ AL + +M A V A SY ++ACSR G+ + AL+LL A H +L + AP D +YG A+ AC G W +AL L+ +S + N+++ N+A+SAC K G+ A +LL M
Sbjct: 48 ISSCRRSDGWQQALGILAQMPACYSVQASLASYNAAMAACSRAGQWQVALELLQ---AVHEKLGSLAPSAXXXXXXXXXXXXXXXXXXXXXXLFGFSDPDEFMYGAAISACEKGGGQWDKALGLLSHLSMASRRIPLNVIIHNSAISACEKAGRWRCALELLHGM 209
BLAST of mRNA_H-paniculata_contig273.7473.1 vs. uniprot
Match: A0A812USN0_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812USN0_9DINO) HSP 1 Score: 58.5 bits (140), Expect = 2.750e-5 Identity = 38/103 (36.89%), Postives = 53/103 (51.46%), Query Frame = 1
Query: 157 NAALKALDECHRWQLALTVF----REMQAAGVAADRNSYFFTISACSRRGEARTALQLLSEMTAAHARLEAPAPDLLLYGVAVKACAHGRAWRQALRLVEDMS 453
NAAL AL CHRWQLAL + RE++A + SY I+AC+R +L E+ L PDL+ Y A+ A A W+QA+ L ++M+
Sbjct: 69 NAALSALGNCHRWQLALRLLGGASRELRA-----EVQSYSICITACTRAAAPTMGRELFDELKLQRQLL----PDLVAYAAAISAEASAGHWQQAMALFQEMT 162
BLAST of mRNA_H-paniculata_contig273.7473.1 vs. uniprot
Match: A0A813K801_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813K801_POLGL) HSP 1 Score: 58.5 bits (140), Expect = 3.250e-5 Identity = 50/165 (30.30%), Postives = 73/165 (44.24%), Query Frame = 1
Query: 175 LDECHR---WQLALTVFREMQAA-GVAADRNSYFFTISACSRRGEARTALQLLSEMTAAHARLEAPAP-------------------------------DLLLYGVAVKACAHGRA-WRQALRLVEDMSAVG--VKPNIVVLNTALSACAKCGQTTRATDLLRDM 555
+ C R WQ AL + +M A V A SY ++ACSR G+ + AL+LL A H +L + AP D +YG A+ AC G W +AL L+ +S + N+++ N+A+SAC K G+ A +LL M
Sbjct: 508 ISSCRRSDGWQQALGILAQMPACYSVQASLASYNAAMAACSRAGQWQVALELLQ---AVHEKLGSLAPSAXXXXXXXXXXXXXXXXXXXXXXLFGFSDPDEFMYGAAISACEKGGGQWDKALGLLSHLSMASRRIPLNVIIHNSAISACEKAGRWRCALELLHGM 669
BLAST of mRNA_H-paniculata_contig273.7473.1 vs. uniprot
Match: D7FTF0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF0_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 3.770e-5 Identity = 35/108 (32.41%), Postives = 56/108 (51.85%), Query Frame = 1
Query: 151 VYNAALKALDECHRWQLALTVFREMQAAGVAADRNSYFFTISACSRRGEARTALQLLSEMTAAHARLEAPAPDLLLYGVAVKACAHGRAWRQALRLVEDMSAVGVKPN 474
V+ AA++A + + + L M+A G + + Y IS C R+G A+ LL + + + D++ + AV AC G WRQAL L+E+M A G+KP+
Sbjct: 69 VHTAAIRAALDGGKARPVLATIAAMRADGFVPNISLYNKAISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVTFSAAVAACRDGGEWRQALALMEEMQAAGIKPD 176
BLAST of mRNA_H-paniculata_contig273.7473.1 vs. uniprot
Match: A0A6A3CXC7_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CXC7_HIBSY) HSP 1 Score: 53.1 bits (126), Expect = 6.230e-5 Identity = 32/80 (40.00%), Postives = 44/80 (55.00%), Query Frame = 1
Query: 1093 MKALELRPDVVTYSTVIRACERALPPQPDVALRLLSHMETAGVKPNNTTFVSVLLSLGRAGRCLECLEVLKGMSARGTPP 1332
MKA L P V++Y+T+I+ Q DV LRL M+ G+KPN TT+ ++L L AG+ E +LK M R P
Sbjct: 1 MKAKNLTPTVISYTTMIKGYVAV--GQVDVGLRLFEEMKCFGIKPNATTYSTILPGLCDAGKTNEAKTILKEMLERYVAP 78
BLAST of mRNA_H-paniculata_contig273.7473.1 vs. uniprot
Match: A0A812Q5L8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812Q5L8_9DINO) HSP 1 Score: 57.0 bits (136), Expect = 6.690e-5 Identity = 35/120 (29.17%), Postives = 60/120 (50.00%), Query Frame = 1
Query: 154 YNAALKALDECHRWQLALTVFREMQAAGVAADRNSYFFTISACSRRGEARTALQLLSEMTAAHARLEAPAPDLLLYGVAVKACAHGRAWRQALRLVEDMSAVGVKPNIVVLNTALSACAK 513
YNAA++A + WQ+A+++F EM +A D+ + A + G+ + A LS + + EA + Y V AC+ + W+ AL + S+ G N + +N A+SAC +
Sbjct: 316 YNAAIRACERAGMWQVAVSLFEEMDVRRLAPDQFTGSTVAPALAASGKRQAASHFLSRLEEQSVQHEA-----IAYSGMVNACSKMQEWQPALAWLLSASSKGFCSNAIAVNAAVSACCE 430 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig273.7473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig273.7473.1 >prot_H-paniculata_contig273.7473.1 ID=prot_H-paniculata_contig273.7473.1|Name=mRNA_H-paniculata_contig273.7473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=556bp KPAWVEDPYVFRVKKWIRAAGRKRDHERVVMYLRKFQDGRTLKGKSVAVHback to top mRNA from alignment at H-paniculata_contig273:26427..42417+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig273.7473.1 ID=mRNA_H-paniculata_contig273.7473.1|Name=mRNA_H-paniculata_contig273.7473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15991bp|location=Sequence derived from alignment at H-paniculata_contig273:26427..42417+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig273:26427..42417+ >mRNA_H-paniculata_contig273.7473.1 ID=mRNA_H-paniculata_contig273.7473.1|Name=mRNA_H-paniculata_contig273.7473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3336bp|location=Sequence derived from alignment at H-paniculata_contig273:26427..42417+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |