mRNA_H-paniculata_contig273.7471.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig273.7471.1
Unique NamemRNA_H-paniculata_contig273.7471.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig273.7471.1 vs. uniprot
Match: D7FNQ1_ECTSI (Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ1_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 4.880e-74
Identity = 133/243 (54.73%), Postives = 153/243 (62.96%), Query Frame = 3 
Query:   66 FPYRDVRKGDTNALHSWLARGGQVDAPLLSHVAETWTPLMLACAEGNPVVARTIIESGGARASARVGTRVLASPAPLHVAARYGHSIVVTTLLELGVPVDAHDTIGLTXXXXXXXXXXXXXXXXXXXXXAEPSN--EGPGGATAFDMAELGGFEGVAEVLRKYSL--RRGEAEAANMKALIPWLEALGCIEFLSRFLTAGYDDLAFMASHGLTEADLDCIGVPHEKLGLRKKLLAMHAVREFL 782
            FPY++ R GD +AL  WL++GG +DAPLL  VAETWTPL LACAEG   + R I+E GGAR S    T+VLAS +PLHVA+RYGH+ V   LLELG  VDA DT G T                     A+ S+  E P  A A DMAE+ GF+  A +LR  +L    G       K L  WL  LGC EFL RFL AGYDDL FMAS GLTEADLDC+GVP +KLGLRKKLLAMH V  FL
Sbjct:    6 FPYQETRGGDFSALRHWLSQGGTIDAPLLRSVAETWTPLALACAEGRVELVRAIVEIGGARPSFSAQTKVLASSSPLHVASRYGHAGVAAVLLELGAVVDARDTFGFTPLCYAAGNGHLKTIEVLLEAGADASSSFEAPYAAKALDMAEMAGFDDAATLLRSRALAGEDGGEAVRRRKTLASWLGVLGCREFLGRFLRAGYDDLQFMASQGLTEADLDCVGVPGDKLGLRKKLLAMHGVEGFL 248
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BLAST of mRNA_H-paniculata_contig273.7471.1 vs. uniprot
Match: A0A835YT05_9STRA (A designed full consensus ankyrin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT05_9STRA)

HSP 1 Score: 135 bits (340), Expect = 3.220e-33
Identity = 96/242 (39.67%), Postives = 116/242 (47.93%), Query Frame = 3 
Query:   66 FPYRDVRKGDTNALHSWLARGGQVDAPLLSHVAETWTPLMLACAEGNPVVARTIIESGGARASARVGTRVLASPAPLHVAARYGHS--IVVTTLLELGVPVDAHDTIGLTXXXXXXXXXXXXXXXXXXXXXAEPSNEGPGGA-TAFDMAELGGFEGVAEVLRKYSLRRGEAEAANMKALIPWLEALGCIEFLSRFLTAGYDDLAFMASHGLTEADLDCIGVPHEKLGLRKKLLAMHAVREFL 782
            FPY  VR GD  A  SW  R    D        E WTPL LA AEGN      +++ G AR  +   ++VL    PLHVAARYG S  IV   L   G    A D+ G+T                     A        GA T  D A L     VA +L   + R G A A     L  WL +LGC  +   F  AGYDDLAF+A+HGL+  DLDCIGVP  +LGLR+KL A+H + + L
Sbjct:   22 FPYAAVRTGDLLAAASWAYRSNSSDWANARLAGEQWTPLHLAVAEGNHAAVAFLLQHG-ARPDSIATSKVLPGHTPLHVAARYGSSPDIVAALLAAPGADAGAADSHGMTPLHYAACSGHADCAQQLLSAGASALAPSAHGALTPLDAARLCRHAAVAALLEAAAAREG-ARAP----LAAWLRSLGCGAYARAFAAAGYDDLAFIAAHGLSAEDLDCIGVPMAQLGLRRKLTALHNIAQHL 257
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BLAST of mRNA_H-paniculata_contig273.7471.1 vs. uniprot
Match: A0A812P6A8_SYMMI (ANK3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812P6A8_SYMMI)

HSP 1 Score: 86.7 bits (213), Expect = 1.850e-16
Identity = 55/183 (30.05%), Postives = 85/183 (46.45%), Query Frame = 3 
Query:  291 PLHVAARYGHSIVVTTLLELGVPVDAHDTIGLTXXXXXXXXXXXXXXXXXXXXXAEPSNEGPGGATAFDMAELGGFEGVAEVLRKYSLRRGEAEAANMKALIPWLEALGCIEFLSRFLTAGYDDLAFMASHGLTEADLDCIGVPHEKLGLRKKLLAMHAVREFLPNQDVGEKDQTGSLGGSIS 839
            P+H+ A YGH + +  +L      D  D  G T                     A  S     G+T   +A+  G+  +A++L        +  A   +    WL +LG   ++S F  AGYD LAF+A+HGL++ D DC+G+P  ++GLR+KL  +H +  F+P   VG K +     G  S
Sbjct:    3 PVHICALYGH-VDILVILVTATNADIQDQWGFTALHYAVSNRKIQAVQFLLDFGANASLTSSAGSTPLQIAQELGYHEIADILASKVSITEDPAAPQFRE---WLRSLGAGAYISSFFKAGYD-LAFVAAHGLSDEDCDCVGIPTSQMGLRRKLKTLHKIELFVP---VGGKKEIDGEDGESS 177
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BLAST of mRNA_H-paniculata_contig273.7471.1 vs. uniprot
Match: A0A482UJW8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UJW8_9ARCH)

HSP 1 Score: 69.3 bits (168), Expect = 2.970e-11
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 3 
Query:  612 LGCIEFLSRFLTAGYDDLAFMASHGLTEADLDCIGVPHEKLGLRKKLLAMHAVREFLPNQDVGE 803
            LG  E+L RFL AGYD L F+ +HGL++ DLDCIGVP  K+GLR+K+  +H +  F   ++ GE
Sbjct:   10 LGGSEYLQRFLDAGYD-LPFIHTHGLSDVDLDCIGVPVNKMGLRRKMSKLHGLDRFYVPEEEGE 72
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BLAST of mRNA_H-paniculata_contig273.7471.1 vs. uniprot
Match: A0A5A8EEU2_CAFRO (SAM domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EEU2_CAFRO)

HSP 1 Score: 67.8 bits (164), Expect = 3.230e-9
Identity = 82/232 (35.34%), Postives = 103/232 (44.40%), Query Frame = 3 
Query:   84 RKGDTNALHSWLARGGQVDAPLLSHVAETWTPLMLACAEGNPVVARTIIESGGARASARVGTRVLASPAPLHVAARYGHSIVVTTLLELGVPVDAHDTIGLTXXXXXXXXXXXXXXXXXXXXXAEPSNEGPGGATAFDMAELGGFEGVAEVLRKYSLRRGEAEAANMKALIPWLEALGCIEFLSRFLTAGYDDLAFMASHGLTEADLDCIGVPHEKLGLRKKLLAMHAVREF 779
            R GD   L  W + GG VD+PL +  A  WTPL    A+GN    R+++ +G   AS   G                              P DA D  G  XXXXXXXXXXXXXXXXXXXXX                        V   LR      G+      + L+ WL A+G     +  L  G+DDLAF+A  G TEAD D +GV     G RKKL +++ ++EF
Sbjct:    9 RAGDVGRLQEWASAGGNVDSPLDADYAG-WTPLHFVAADGNASACRSLLAAGADVASKSPGDGFXXXXXXXXX----XXXXXXXXXXXXXAPADAQDAYGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAV---LRAIEAASGKGRGVQGR-LLDWLRAIGLESLYTAMLEQGFDDLAFIAEAGFTEADCDAVGV--RLAGHRKKLTSLYRIKEF 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig273.7471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FNQ1_ECTSI4.880e-7454.73Chain A, Crystal Structure Of A Designed Full Cons... [more]
A0A835YT05_9STRA3.220e-3339.67A designed full consensus ankyrin n=1 Tax=Tribonem... [more]
A0A812P6A8_SYMMI1.850e-1630.05ANK3 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A482UJW8_9ARCH2.970e-1151.56Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A5A8EEU2_CAFRO3.230e-935.34SAM domain-containing protein n=4 Tax=Cafeteria ro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig273contigH-paniculata_contig273:17212..18551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.9
Seed ortholog evalue4e-61
Seed eggNOG ortholog2880.D7FNQ1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_004680.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1057
Cds size936
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig273.7471.1prot_H-paniculata_contig273.7471.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig273 17271..18489 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929822.9974082-UTR-H-paniculata_contig273:17211..172701622929822.9974082-UTR-H-paniculata_contig273:17211..17270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig273 17212..17270 +
1691481026.9592955-UTR-H-paniculata_contig273:17211..172701691481026.9592955-UTR-H-paniculata_contig273:17211..17270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig273 17212..17270 +
1622929823.0403714-UTR-H-paniculata_contig273:18489..185511622929823.0403714-UTR-H-paniculata_contig273:18489..18551Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig273 18490..18551 +
1691481026.9895487-UTR-H-paniculata_contig273:18489..185511691481026.9895487-UTR-H-paniculata_contig273:18489..18551Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig273 18490..18551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929823.0102086-CDS-H-paniculata_contig273:17270..176451622929823.0102086-CDS-H-paniculata_contig273:17270..17645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig273 17271..17645 +
1691481026.9715927-CDS-H-paniculata_contig273:17270..176451691481026.9715927-CDS-H-paniculata_contig273:17270..17645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig273 17271..17645 +
1622929823.022674-CDS-H-paniculata_contig273:17928..184891622929823.022674-CDS-H-paniculata_contig273:17928..18489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig273 17929..18489 +
1691481026.9804091-CDS-H-paniculata_contig273:17928..184891691481026.9804091-CDS-H-paniculata_contig273:17928..18489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig273 17929..18489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig273.7471.1

>prot_H-paniculata_contig273.7471.1 ID=prot_H-paniculata_contig273.7471.1|Name=mRNA_H-paniculata_contig273.7471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=312bp
MAFPYRDVRKGDTNALHSWLARGGQVDAPLLSHVAETWTPLMLACAEGNP
VVARTIIESGGARASARVGTRVLASPAPLHVAARYGHSIVVTTLLELGVP
VDAHDTIGLTPLHYAAGNGHLKAVRVLLDAGAEPSNEGPGGATAFDMAEL
GGFEGVAEVLRKYSLRRGEAEAANMKALIPWLEALGCIEFLSRFLTAGYD
DLAFMASHGLTEADLDCIGVPHEKLGLRKKLLAMHAVREFLPNQDVGEKD
QTGSLGGSISSADEDASVDESSSSANDDDGSDGASTADDDSISAKSGGET
AGSSDNISTSY*
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mRNA from alignment at H-paniculata_contig273:17212..18551+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig273.7471.1 ID=mRNA_H-paniculata_contig273.7471.1|Name=mRNA_H-paniculata_contig273.7471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1340bp|location=Sequence derived from alignment at H-paniculata_contig273:17212..18551+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCATCACGCAGTCAAGCGGCGAGCACGTCACAGAAGGAGGCAGCCGCA
GTCCCGCCCATGGCATTTCCGTACAGAGACGTACGAAAAGGAGATACCAA
CGCCCTGCACTCTTGGCTCGCTCGAGGTGGACAAGTCGATGCGCCTCTTC
TCTCTCATGTGGCTGAAACGTGGACACCGTTAATGCTCGCTTGTGCAGAA
GGGAATCCTGTTGTAGCACGAACCATTATCGAATCCGGCGGGGCGCGGGC
ATCCGCCCGCGTTGGCACAAGAGTATTGGCAAGCCCCGCACCGCTTCATG
TAGCCGCTCGCTACGGTCACTCGATCGTTGTCACAACTCTTTTAGAGCTG
GGGGTGCCGGTAGACGCCCATGACACGATAGGTTTGACACCGTTGCACTA
CGCCGCAGGAAACGGGCACCTGAAGGCTGTCCGGGTGAGCGTTCTGTCGT
TCTATACTAACTGTAGAGCGATTGCGCTGAGGGTTGCTGGGCTTTCAAGA
TATGTCGTGCGCGCCGTTTTCCGTAGGCAATCGTCCCATGTGTTGACGAA
TCAGCTCTATTTGAAACGTGTGGTACATCTGTGGAGTGGTGGGGGGTAGA
GAGCAAGTCACTCGGTGGAGATCATGCGAAAATCCCCTTCTGTAGGCGAT
AAGAGACCAGAATGGTGTACGAATCTCACCTTAATCACCTTCCCCCTTCT
GTCGTTCCTTTACTCAGGTTCTGCTCGATGCTGGGGCAGAGCCTTCAAAT
GAAGGACCAGGGGGAGCCACTGCTTTTGACATGGCTGAGCTGGGGGGGTT
CGAGGGTGTTGCCGAAGTTTTACGGAAATATTCTCTGAGGCGCGGGGAGG
CCGAGGCGGCGAATATGAAAGCACTGATTCCGTGGCTGGAGGCGCTCGGG
TGCATAGAGTTCCTGTCGCGCTTCTTAACTGCTGGTTACGATGACTTGGC
CTTCATGGCATCGCACGGATTGACCGAGGCAGATTTGGACTGTATCGGAG
TGCCACATGAGAAGCTGGGGCTGAGAAAAAAGCTACTGGCGATGCACGCG
GTGCGCGAGTTCTTGCCGAACCAGGACGTGGGGGAGAAGGACCAGACAGG
AAGCCTAGGCGGTAGTATTAGTAGTGCCGACGAAGACGCTTCAGTTGATG
AGAGCTCATCTTCCGCCAATGATGACGACGGTAGTGACGGAGCGTCCACC
GCGGACGACGATAGCATCTCGGCCAAGTCTGGAGGCGAAACAGCTGGCAG
TAGCGACAATATTAGTACCAGTTACTGACTCTCCACTACTATTCGATTGC
GGTGTGTGCTTTCGAATGCCCCCCACTCTGCTTAGCTCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig273:17212..18551+

>mRNA_H-paniculata_contig273.7471.1 ID=mRNA_H-paniculata_contig273.7471.1|Name=mRNA_H-paniculata_contig273.7471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1872bp|location=Sequence derived from alignment at H-paniculata_contig273:17212..18551+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATTTCCGTACAGAGACGTACGAAAAGGAGATACCAACGCCCTGCA
CTCTTGGCTCGCTCGAGGTGGACAAGTCGATGCGCCTCTTCTCTCTCATG
TGGCTGAAACGTGGACACCGTTAATGCTCGCTTGTGCAGAAGGGAATCCT
GTTGTAGCACGAACCATTATCGAATCCGGCGGGGCGCGGGCATCCGCCCG
CGTTGGCACAAGAGTATTGGCAAGCCCCGCACCGCTTCATGTAGCCGCTC
GCTACGGTCACTCGATCGTTGTCACAACTCTTTTAGAGCTGGGGGTGCCG
GTAGACGCCCATGACACGATAGGTTTGACACCGTTGCACTACGCCGCAGG
AAACGGGCACCTGAAGGCTGTCCGGATGGCATTTCCGTACAGAGACGTAC
GAAAAGGAGATACCAACGCCCTGCACTCTTGGCTCGCTCGAGGTGGACAA
GTCGATGCGCCTCTTCTCTCTCATGTGGCTGAAACGTGGACACCGTTAAT
GCTCGCTTGTGCAGAAGGGAATCCTGTTGTAGCACGAACCATTATCGAAT
CCGGCGGGGCGCGGGCATCCGCCCGCGTTGGCACAAGAGTATTGGCAAGC
CCCGCACCGCTTCATGTAGCCGCTCGCTACGGTCACTCGATCGTTGTCAC
AACTCTTTTAGAGCTGGGGGTGCCGGTAGACGCCCATGACACGATAGGTT
TGACACCGTTGCACTACGCCGCAGGAAACGGGCACCTGAAGGCTGTCCGG
GTTCTGCTCGATGCTGGGGCAGAGCCTTCAAATGAAGGACCAGGGGGAGC
CACTGCTTTTGACATGGCTGAGCTGGGGGGGTTCGAGGGTGTTGCCGAAG
TTTTACGGAAATATTCTCTGAGGCGCGGGGAGGCCGAGGCGGCGAATATG
AAAGCACTGATTCCGTGGCTGGAGGCGCTCGGGTGCATAGAGTTCCTGTC
GCGCTTCTTAACTGCTGGTTACGATGACTTGGCCTTCATGGCATCGCACG
GATTGACCGAGGCAGATTTGGACTGTATCGGAGTGCCACATGAGAAGCTG
GGGCTGAGAAAAAAGCTACTGGCGATGCACGCGGTGCGCGAGTTCTTGCC
GAACCAGGACGTGGGGGAGAAGGACCAGACAGGAAGCCTAGGCGGTAGTA
TTAGTAGTGCCGACGAAGACGCTTCAGTTGATGAGAGCTCATCTTCCGCC
AATGATGACGACGGTAGTGACGGAGCGTCCACCGCGGACGACGATAGCAT
CTCGGCCAAGTCTGGAGGCGAAACAGCTGGCAGTAGCGACAATATTAGTA
CCAGTTACTGAGTTCTGCTCGATGCTGGGGCAGAGCCTTCAAATGAAGGA
CCAGGGGGAGCCACTGCTTTTGACATGGCTGAGCTGGGGGGGTTCGAGGG
TGTTGCCGAAGTTTTACGGAAATATTCTCTGAGGCGCGGGGAGGCCGAGG
CGGCGAATATGAAAGCACTGATTCCGTGGCTGGAGGCGCTCGGGTGCATA
GAGTTCCTGTCGCGCTTCTTAACTGCTGGTTACGATGACTTGGCCTTCAT
GGCATCGCACGGATTGACCGAGGCAGATTTGGACTGTATCGGAGTGCCAC
ATGAGAAGCTGGGGCTGAGAAAAAAGCTACTGGCGATGCACGCGGTGCGC
GAGTTCTTGCCGAACCAGGACGTGGGGGAGAAGGACCAGACAGGAAGCCT
AGGCGGTAGTATTAGTAGTGCCGACGAAGACGCTTCAGTTGATGAGAGCT
CATCTTCCGCCAATGATGACGACGGTAGTGACGGAGCGTCCACCGCGGAC
GACGATAGCATCTCGGCCAAGTCTGGAGGCGAAACAGCTGGCAGTAGCGA
CAATATTAGTACCAGTTACTGA
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