mRNA_H-paniculata_contig11168.747.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11168.747.1
Unique NamemRNA_H-paniculata_contig11168.747.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11168.747.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.090e-19
Identity = 61/95 (64.21%), Postives = 64/95 (67.37%), Query Frame = -3 
Query:   23 KVEKADEGRKARGGARAAGGKPGTAARSGGSDKKNGPCSVGAQGGKSGSSGACWICDKLGHYARDCRKAPSEKSGGKPAAAAQGSAQSQARLQQQ 307
            K+EK D  RKARGG RAAG K   AAR G S K  G  S G Q   SGSSG CWICDK GH AR C+KA SEKSGGKPA AA GS +S AR  QQ
Sbjct:  178 KIEKVDAERKARGGGRAAGEKFNKAARGGASGKPRGQRSGGGQXXXSGSSGNCWICDKPGHVARHCKKASSEKSGGKPAPAAAGSEKSPARPHQQ 272
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11168.747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L028_9PHAE1.090e-1964.21CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11168contigH-paniculata_contig11168:4494..4802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size310
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928821.8677065-CDS-H-paniculata_contig11168:4493..48021622928821.8677065-CDS-H-paniculata_contig11168:4493..4802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11168 4494..4802 +
1691480633.6204646-CDS-H-paniculata_contig11168:4493..48021691480633.6204646-CDS-H-paniculata_contig11168:4493..4802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11168 4494..4802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11168.747.1prot_H-paniculata_contig11168.747.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11168 4494..4802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11168.747.1

>prot_H-paniculata_contig11168.747.1 ID=prot_H-paniculata_contig11168.747.1|Name=mRNA_H-paniculata_contig11168.747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MLSALDRPAVEAAPETERILAQRQQVYPQIFQTAPSDSHERNARACRKSN
MRQKNPTCLPVHLRNTDRFSCRIPLNGPPCQVCLPQHEHPRGPCGLRRPS
RPS
back to top

mRNA from alignment at H-paniculata_contig11168:4494..4802+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11168.747.1 ID=mRNA_H-paniculata_contig11168.747.1|Name=mRNA_H-paniculata_contig11168.747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig11168:4494..4802+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGTCGGCGCTCGACCGGCCTGCTGTTGAAGCCGCGCCTGAGACTGA
GCGGATCCTTGCGCAGCGGCAGCAGGTTTACCCCCAGATTTTTCAGACGG
CGCCTTCCGACAGTCACGAGCGTAATGCCCGAGCTTGTCGCAAATCCAAC
ATGCGCCAGAAGAACCCGACTTGCCTCCCTGTGCACCTACGGAACACGGA
CCGTTTTTCTTGTCGGATCCCCCTGAACGGGCCGCCGTGCCAGGTTTGCC
TCCCGCAGCACGAGCACCCCCGCGGGCCTTGCGGCCTTCGTCGGCCTTCT
CGACCTTCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11168:4494..4802+

>mRNA_H-paniculata_contig11168.747.1 ID=mRNA_H-paniculata_contig11168.747.1|Name=mRNA_H-paniculata_contig11168.747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig11168:4494..4802+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGTCGGCGCTCGACCGGCCTGCTGTTGAAGCCGCGCCTGAGACTGA
GCGGATCCTTGCGCAGCGGCAGCAGGTTTACCCCCAGATTTTTCAGACGG
CGCCTTCCGACAGTCACGAGCGTAATGCCCGAGCTTGTCGCAAATCCAAC
ATGCGCCAGAAGAACCCGACTTGCCTCCCTGTGCACCTACGGAACACGGA
CCGTTTTTCTTGTCGGATCCCCCTGAACGGGCCGCCGTGCCAGGTTTGCC
TCCCGCAGCACGAGCACCCCCGCGGGCCTTGCGGCCTTCGTCGGCCTTCT
CGACCTTCGATGTTGTCGGCGCTCGACCGGCCTGCTGTTGAAGCCGCGCC
TGAGACTGAGCGGATCCTTGCGCAGCGGCAGCAGGTTTACCCCCAGATTT
TTCAGACGGCGCCTTCCGACAGTCACGAGCGTAATGCCCGAGCTTGTCGC
AAATCCAACATGCGCCAGAAGAACCCGACTTGCCTCCCTGTGCACCTACG
GAACACGGACCGTTTTTCTTGTCGGATCCCCCTGAACGGGCCGCCGTGCC
AGGTTTGCCTCCCGCAGCACGAGCACCCCCGCGGGCCTTGCGGCCTTCGT
CGGCCTTCTCGACCTTCG
back to top