mRNA_H-paniculata_contig27287.7465.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27287.7465.1
Unique NamemRNA_H-paniculata_contig27287.7465.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27287.7465.1 vs. uniprot
Match: D7FUW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUW3_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 5.190e-33
Identity = 67/81 (82.72%), Postives = 74/81 (91.36%), Query Frame = 1
Query:    4 EQNAELRAKFSILGQRKARLLQSITNDSAESKRLNITIEGMHMDMGRLNELIGKSGRRAHDLDDATGALEREFVQELRDLE 246
            E+N ELRA+ SI+GQRKARLLQS+T+D AESKRL   IEGMHMDMGRLN+LIGKSGRRAH+LDDAT ALEREFVQELRDLE
Sbjct:  565 EKNGELRARCSIVGQRKARLLQSMTSDLAESKRLRSAIEGMHMDMGRLNDLIGKSGRRAHELDDATRALEREFVQELRDLE 645          
BLAST of mRNA_H-paniculata_contig27287.7465.1 vs. uniprot
Match: A0A7S3XSM0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSM0_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 6.640e-15
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    4 EQNAELRAKFSILGQRKARLLQSITNDSAESKRLNITIEGMHMDMGRLNELIGKSGRRAHDLDDATGALEREFVQELRDLE 246
            E+NAEL+AK SIL Q++ R LQ I     + KRL+ +IE MH DM RLNELIG++ +   +L +    LE+EFV+ELR+LE
Sbjct:  455 EKNAELKAKVSILSQKRLRQLQEIQQHKDDVKRLSASIEVMHKDMVRLNELIGQNAKAQGELQNQNFVLEKEFVEELRELE 535          
BLAST of mRNA_H-paniculata_contig27287.7465.1 vs. uniprot
Match: A0A7S1XYJ4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYJ4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.910e-14
Identity = 37/81 (45.68%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    4 EQNAELRAKFSILGQRKARLLQSITNDSAESKRLNITIEGMHMDMGRLNELIGKSGRRAHDLDDATGALEREFVQELRDLE 246
            ++NAEL A+ +IL Q++ RLL  IT    E++RL+  +  MH DM RLN+LIGK+ +   D+ +    +EREFV+EL++LE
Sbjct:  571 DENAELSARITILSQKRLRLLADITRQDEETQRLDGRVRVMHQDMSRLNDLIGKNTKMQDDIKNTNFVMEREFVEELKELE 651          
BLAST of mRNA_H-paniculata_contig27287.7465.1 vs. uniprot
Match: A0A7S2C2G7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2G7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.810e-13
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    4 EQNAELRAKFSILGQRKARLLQSITNDSAESKRLNITIEGMHMDMGRLNELIGKSGRRAHDLDDATGALEREFVQELRDLE 246
            E+N ELRA+ SIL ++K RL + I +  AE KRL+  I+ MH DM RLNELIGK+     +L      +E EFV EL++LE
Sbjct:  575 EKNTELRARISILTEKKLRLNKDIGSHEAEVKRLDHMIQNMHKDMQRLNELIGKNTELQGELSQTNSVMEMEFVNELKELE 655          
BLAST of mRNA_H-paniculata_contig27287.7465.1 vs. uniprot
Match: A0A7S1UJV6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJV6_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.060e-13
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   10 NAELRAKFSILGQRKARLLQSITNDSAESKRLNITIEGMHMDMGRLNELIGKSGRRAHDLDDATGALEREFVQELRDLE 246
            NAEL  + +IL Q++ RLL  IT    E++RL+  +  MH DM RLN+LIGK+ +   D+ +    +EREFV+EL++LE
Sbjct:    1 NAELSTRITILSQKRLRLLADITRQDEETQRLDGRVRVMHQDMSRLNDLIGKNTKMQDDIKNTNFVMEREFVEELKELE 79          
BLAST of mRNA_H-paniculata_contig27287.7465.1 vs. uniprot
Match: A0A835YSP4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP4_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.670e-10
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 1
Query:    4 EQNAELRAKFSILGQRKARLLQSITNDSAESKRL-----------NITIEGMHMDMGRLNELIGKSGRRAHDLDDATGALEREFVQELRDLE 246
            E N EL+A   IL +R+AR++     + AE+KRL                 MH+DM RLN+LIGKSG +A +L +A+  +ER+F+ EL+ LE
Sbjct:  509 EANDELKAHSGILARRRARIMGEAATNEAEAKRLAXXXXXXXXXXXXXXXXMHLDMARLNQLIGKSGAQAAELGNASSNMERDFLLELKALE 600          
BLAST of mRNA_H-paniculata_contig27287.7465.1 vs. uniprot
Match: K3WH79_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WH79_GLOUD)

HSP 1 Score: 62.8 bits (151), Expect = 1.280e-9
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 1
Query:    4 EQNAELRAKFSILGQRKARLLQSITNDSAESKRLNITIEGMHMDMGRLNELIGKSGRRAHDLDDATGALEREFVQELRDLE 246
            E+N EL++K S+L Q++ RLL        + K L  +I GMH D  +LNELI K+  R  +L +    LE EF +EL+DLE
Sbjct:  584 EKNQELKSKTSVLEQKQLRLLNDFDKMRKDIKELKASINGMHNDTVKLNELIAKNSSRQEELLNMNHGLEMEFKRELKDLE 664          
BLAST of mRNA_H-paniculata_contig27287.7465.1 vs. uniprot
Match: A0A7R9W286_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W286_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.630e-9
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    4 EQNAELRAKFSILGQRKARLLQSITNDSAESKRLNITIEGMHMDMGRLNELIGKSGRRAHDL 189
            E+N E+ A+ +IL Q++ RL+Q I  + AE K +N ++EGMH DM RLNELI K+ +   DL
Sbjct:   48 EKNTEVNARLNILKQKRLRLIQDIHVNEAEVKAVNTSMEGMHSDMSRLNELISKNNQLQTDL 109          
BLAST of mRNA_H-paniculata_contig27287.7465.1 vs. uniprot
Match: A0A5D6XQH0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQH0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 7.440e-8
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1
Query:    4 EQNAELRAKFSILGQRKARLLQSITNDSAESKRLNITIEGMHMDMGRLNELIGKSGRRAHDLDDATGALEREFVQELRDLE 246
            E+N EL++K S+L Q++ RL   +     + K L  +I GMH D  +LNELI K+  R  +L +    LE EF  EL++LE
Sbjct:  592 EKNQELKSKTSVLEQKQLRLQNDLDTMKKDVKELRGSINGMHGDTVKLNELIAKNSSRQEELLNMNHGLELEFKHELKELE 672          
BLAST of mRNA_H-paniculata_contig27287.7465.1 vs. uniprot
Match: A0A7S2UYH9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYH9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.310e-7
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:   97 KRLNITIEGMHMDMGRLNELIGKSGRRAHDLDDATGALEREFVQELRDLE 246
            KRL+ +IE MH DM RLN++IGK+     DL +    LE+EFVQELR+LE
Sbjct:    2 KRLDASIEAMHKDMVRLNDMIGKNTTHKDDLANQNFVLEKEFVQELRELE 51          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27287.7465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FUW3_ECTSI5.190e-3382.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XSM0_HETAK6.640e-1551.85Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S1XYJ4_9STRA5.910e-1445.68Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2C2G7_9STRA2.810e-1349.38Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1UJV6_9STRA4.060e-1345.57Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835YSP4_9STRA3.670e-1041.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K3WH79_GLOUD1.280e-943.21Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7R9W286_9STRA1.630e-948.39Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A5D6XQH0_9STRA7.440e-840.74Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S2UYH9_9STRA4.310e-756.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27287contigH-paniculata_contig27287:2373..2618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue5.8e-28
Seed eggNOG ortholog2880.D7FUW3
Preferred nameCCDC40
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0001655,GO:0001822,GO:0001889,GO:0001947,GO:0002009,GO:0003007,GO:0003143,GO:0003146,GO:0003341,GO:0003351,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0030323,GO:0030324,GO:0031016,GO:0031514,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035050,GO:0035082,GO:0035239,GO:0035295,GO:0035469,GO:0036159,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048562,GO:0048565,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048732,GO:0048793,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0051179,GO:0051270,GO:0051641,GO:0051674,GO:0055123,GO:0060271,GO:0060287,GO:0060429,GO:0060541,GO:0060562,GO:0060632,GO:0061008,GO:0061371,GO:0061512,GO:0065003,GO:0065007,GO:0070286,GO:0070727,GO:0070925,GO:0071840,GO:0071907,GO:0071910,GO:0072001,GO:0072359,GO:0097014,GO:0097722,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.epithelial cilium movement involved in determination of left/right asymmetry
EggNOG OGs2CJ7Q@1,2QQ91@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_004430.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929822.3152165-CDS-H-paniculata_contig27287:2372..26181622929822.3152165-CDS-H-paniculata_contig27287:2372..2618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27287 2373..2618 -
1691481026.6328166-CDS-H-paniculata_contig27287:2372..26181691481026.6328166-CDS-H-paniculata_contig27287:2372..2618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27287 2373..2618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27287.7465.1prot_H-paniculata_contig27287.7465.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27287 2373..2618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27287.7465.1

>prot_H-paniculata_contig27287.7465.1 ID=prot_H-paniculata_contig27287.7465.1|Name=mRNA_H-paniculata_contig27287.7465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
NEQNAELRAKFSILGQRKARLLQSITNDSAESKRLNITIEGMHMDMGRLN
ELIGKSGRRAHDLDDATGALEREFVQELRDLE
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mRNA from alignment at H-paniculata_contig27287:2373..2618-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27287.7465.1 ID=mRNA_H-paniculata_contig27287.7465.1|Name=mRNA_H-paniculata_contig27287.7465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at H-paniculata_contig27287:2373..2618- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGAACAGAACGCAGAGCTTCGAGCAAAATTTTCCATCCTGGGGCAACG CAAAGCCCGGTTGCTGCAGTCCATCACCAATGACAGCGCGGAGTCGAAGC GACTAAACATCACGATAGAAGGCATGCACATGGACATGGGGAGGCTGAAC GAGCTCATCGGCAAGAGCGGCAGGCGAGCGCACGATCTCGATGACGCAAC CGGCGCCTTGGAGCGCGAGTTCGTGCAAGAGCTGCGGGATCTGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig27287:2373..2618-

>mRNA_H-paniculata_contig27287.7465.1 ID=mRNA_H-paniculata_contig27287.7465.1|Name=mRNA_H-paniculata_contig27287.7465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig27287:2373..2618- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGAACAGAACGCAGAGCTTCGAGCAAAATTTTCCATCCTGGGGCAACG
CAAAGCCCGGTTGCTGCAGTCCATCACCAATGACAGCGCGGAGTCGAAGC
GACTAAACATCACGATAGAAGGCATGCACATGGACATGGGGAGGCTGAAC
GAGCTCATCGGCAAGAGCGGCAGGCGAGCGCACGATCTCGATGACGCAAC
CGGCGCCTTGGAGCGCGAGTTCGTGCAAGAGCTGCGGGATCTGGAGAATG
AACAGAACGCAGAGCTTCGAGCAAAATTTTCCATCCTGGGGCAACGCAAA
GCCCGGTTGCTGCAGTCCATCACCAATGACAGCGCGGAGTCGAAGCGACT
AAACATCACGATAGAAGGCATGCACATGGACATGGGGAGGCTGAACGAGC
TCATCGGCAAGAGCGGCAGGCGAGCGCACGATCTCGATGACGCAACCGGC
GCCTTGGAGCGCGAGTTCGTGCAAGAGCTGCGGGATCTGGAG
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