mRNA_H-paniculata_contig27265.7461.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27265.7461.1
Unique NamemRNA_H-paniculata_contig27265.7461.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27265.7461.1 vs. uniprot
Match: A0A7S2H7R4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H7R4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 9.460e-13
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    7 RPARPPRVAYDSVVEGLAATRRTFELPGRMTLPEIIEVFTDIWEVES 147
            RP  PP V YD VV GL    RT+ELPGRMTLP+I++VF DIWE E 
Sbjct:  149 RPPHPPPVRYDEVVRGLTQVVRTYELPGRMTLPDIVDVFVDIWECEK 195
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BLAST of mRNA_H-paniculata_contig27265.7461.1 vs. uniprot
Match: A0A7S2QZV9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2QZV9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.390e-12
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    7 RPARPPRVAYDSVVEGLAATRRTFELPGRMTLPEIIEVFTDIWEVESTL 153
            RP  PP V YD VV GL   +RT+ELPG MTLP+II +F DIW+ ES +
Sbjct:   97 RPPHPPPVRYDEVVRGLCQVQRTYELPGAMTLPDIISIFGDIWDCESDI 145
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BLAST of mRNA_H-paniculata_contig27265.7461.1 vs. uniprot
Match: A0A7S2VZ09_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZ09_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.620e-12
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    7 RPARPPRVAYDSVVEGLAATRRTFELPGRMTLPEIIEVFTDIWEVESTL 153
            RP  PP V YD VV GL   +RT+ELPG MTLP+II +F DIW+ ES +
Sbjct:  129 RPPHPPPVRYDEVVRGLCQVQRTYELPGAMTLPDIISIFGDIWDCESDI 177
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BLAST of mRNA_H-paniculata_contig27265.7461.1 vs. uniprot
Match: D8LPY2_ECTSI (DLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPY2_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.500e-11
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:   52 GLAATRRTFELPGRMTLPEIIEVFTDIWEVE 144
            GLAATRRTFELPGRMTLPEIIEVFTDIWEVE
Sbjct:  259 GLAATRRTFELPGRMTLPEIIEVFTDIWEVE 289
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BLAST of mRNA_H-paniculata_contig27265.7461.1 vs. uniprot
Match: A0A7S4SX29_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SX29_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.700e-11
Identity = 29/43 (67.44%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   19 PPRVAYDSVVEGLAATRRTFELPGRMTLPEIIEVFTDIWEVES 147
            PP V YD VV GL    RT+ELP RMTLP+IIEVF DIWE E 
Sbjct:   73 PPPVRYDEVVRGLTQVVRTYELPDRMTLPDIIEVFVDIWECEK 115
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BLAST of mRNA_H-paniculata_contig27265.7461.1 vs. uniprot
Match: A0A7S4SXZ0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SXZ0_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.350e-11
Identity = 29/43 (67.44%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   19 PPRVAYDSVVEGLAATRRTFELPGRMTLPEIIEVFTDIWEVES 147
            PP V YD VV GL    RT+ELP RMTLP+IIEVF DIWE E 
Sbjct:  118 PPPVRYDEVVRGLTQVVRTYELPDRMTLPDIIEVFVDIWECEK 160
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BLAST of mRNA_H-paniculata_contig27265.7461.1 vs. uniprot
Match: A0A7S2WEI3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEI3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.850e-11
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    7 RPARPPRVAYDSVVEGLAATRRTFELPGRMTLPEIIEVFTDIWEVES 147
            RPARPP V+YD++V+  +  RRT+ELPGRMTLP ++ +  D+WE + 
Sbjct:  289 RPARPPPVSYDAIVDAFSQPRRTYELPGRMTLPGMVSILNDVWECDG 335
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BLAST of mRNA_H-paniculata_contig27265.7461.1 vs. uniprot
Match: A0A6S8YXK0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8YXK0_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 5.390e-11
Identity = 29/43 (67.44%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   19 PPRVAYDSVVEGLAATRRTFELPGRMTLPEIIEVFTDIWEVES 147
            PP V YD VV GL    RT+ELP RMTLP+IIEVF DIWE E 
Sbjct:  130 PPPVRYDEVVRGLTQVVRTYELPDRMTLPDIIEVFVDIWECEK 172
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BLAST of mRNA_H-paniculata_contig27265.7461.1 vs. uniprot
Match: A0A7S3Y9H9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9H9_HETAK)

HSP 1 Score: 61.6 bits (148), Expect = 6.230e-11
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    7 RPARPPRVAYDSVVEGLAATRRTFELPGRMTLPEIIEVFTDIWEVES 147
            RP  PP V YD+VV+GL+A  RTF LP RM L +++E+F D+WE+E+
Sbjct:   65 RPPAPPPVEYDAVVDGLSARVRTFTLPARMKLGDLVEMFNDVWELEN 111
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BLAST of mRNA_H-paniculata_contig27265.7461.1 vs. uniprot
Match: A0A2D4BQL7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQL7_PYTIN)

HSP 1 Score: 58.5 bits (140), Expect = 1.140e-8
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   10 PARPPRVAYDSVVEGLAATRRTFELPGRMTLPEIIEVFTDIWE 138
            P RPPRV    V +GL++ RRTFELP RM L +++E+F DIWE
Sbjct:  930 PGRPPRVPSHLVFDGLSSVRRTFELPQRMALGDVVEIFVDIWE 972
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27265.7461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A7S2H7R4_9STRA9.460e-1363.83Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2QZV9_9STRA1.390e-1259.18Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2VZ09_9STRA2.620e-1259.18Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
D8LPY2_ECTSI1.500e-11100.00DLH domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S4SX29_9STRA1.700e-1167.44Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4SXZ0_9STRA4.350e-1167.44Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2WEI3_9STRA4.850e-1153.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6S8YXK0_9STRA5.390e-1167.44Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3Y9H9_HETAK6.230e-1155.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2D4BQL7_PYTIN1.140e-858.14Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27265contigH-paniculata_contig27265:3018..3173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue3.8e-09
Seed eggNOG ortholog2880.D8LPY2
Preferred nameCMBL
KEGG rclassRC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686
KEGG koko:K01061
KEGG ReactionR03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222
KEGG Pathwayko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006805,GO:0006807,GO:0008150,GO:0008152,GO:0009410,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0019538,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0071466,GO:0071704,GO:0071944,GO:0140096,GO:1901564
EggNOG free text desc.Dienelactone hydrolase family
EggNOG OGsCOG0412@1,KOG3043@2759
EC3.1.1.45
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size156
Cds size156
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929821.9663815-CDS-H-paniculata_contig27265:3017..31731622929821.9663815-CDS-H-paniculata_contig27265:3017..3173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27265 3018..3173 -
1691481026.5124574-CDS-H-paniculata_contig27265:3017..31731691481026.5124574-CDS-H-paniculata_contig27265:3017..3173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27265 3018..3173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27265.7461.1prot_H-paniculata_contig27265.7461.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27265 3018..3173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27265.7461.1

>prot_H-paniculata_contig27265.7461.1 ID=prot_H-paniculata_contig27265.7461.1|Name=mRNA_H-paniculata_contig27265.7461.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MYRPARPPRVAYDSVVEGLAATRRTFELPGRMTLPEIIEVFTDIWEVEST
L*
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mRNA from alignment at H-paniculata_contig27265:3018..3173-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27265.7461.1 ID=mRNA_H-paniculata_contig27265.7461.1|Name=mRNA_H-paniculata_contig27265.7461.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig27265:3018..3173- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACAGGCCTGCACGTCCCCCGCGTGTGGCGTACGACTCTGTAGTGGA
AGGTCTAGCAGCTACGAGAAGAACCTTCGAGCTTCCAGGGCGCATGACCC
TGCCGGAGATCATCGAGGTTTTCACTGATATATGGGAGGTAGAGAGCACA
TTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig27265:3018..3173-

>mRNA_H-paniculata_contig27265.7461.1 ID=mRNA_H-paniculata_contig27265.7461.1|Name=mRNA_H-paniculata_contig27265.7461.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig27265:3018..3173- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACAGGCCTGCACGTCCCCCGCGTGTGGCGTACGACTCTGTAGTGGA
AGGTCTAGCAGCTACGAGAAGAACCTTCGAGCTTCCAGGGCGCATGACCC
TGCCGGAGATCATCGAGGTTTTCACTGATATATGGGAGGTAGAGAGCACA
TTGTAGATGTACAGGCCTGCACGTCCCCCGCGTGTGGCGTACGACTCTGT
AGTGGAAGGTCTAGCAGCTACGAGAAGAACCTTCGAGCTTCCAGGGCGCA
TGACCCTGCCGGAGATCATCGAGGTTTTCACTGATATATGGGAGGTAGAG
AGCACATTGTAG
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