mRNA_H-paniculata_contig11165.746.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig11165.746.1 vs. uniprot
Match: D7G811_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G811_ECTSI) HSP 1 Score: 493 bits (1269), Expect = 1.180e-153 Identity = 340/749 (45.39%), Postives = 473/749 (63.15%), Query Frame = 1
Query: 1 MQFDPEESGEDRRRRQRDYHAFLDAQVEARNRARLLLEAPAADNLIEDAV----LPSIPMTGRLKHQQLSSPSHDPYSSATNTGKSNGSLNLPPQKVYDGGGAELRELIRRC--TARDDMLDRLEQRLESEAQRRHSLEGTLATFGEKLENLLSDAVAKNSSLGARGAAMGEIREQTHTMGGELAVLREWRLQVDKTLALTPKVHETTQKQVQALEEEARTRMQSDEARAVNFRQSIERLSGEVNMIATRVADEEKGTLQRIANLEVNGFP---------TERVCYVWRVLPCIISGWDYGCVLFFVKLSQKVSNAPKRQIDAVALTGESKGSREATNQLRQQVQELTSLRSSSDDNMISLQQRVRLLENRHQGSHSMLAAARAEDERSRQEMQKSLRVATAEQLVTVRGSLVTELSGLMGETAKRVVETTGIPQDMSALRGRLEVAEERLSIMSEKSVRALEEQLHNLRTEVVRLQDRPHAGPVATSVRELAHNMATAQAVAQTQLTELQDALSAEITARRRNALRLAEAQAAMKEGDKESVVQVTSSLKSRCLELEELVKDLTRDTRTIQEELSSQTQAKMLRAHEQNSKAVGKLEDSLAGENL-MAQHEADVDRTWVKVNARAEELDGLINSNKTLLREAEERARSALAASETRRQVKGQQLNDKIDGLVSEEAVKREALEQAMREQAHTLRESMQAGDRTATNRLEDLQGKLQRLGEKMQAVLADALKEERRNVTTVVGEAQGQV 2199
MQF+PEESGE+RRRRQRDYHAFLDAQVEAR+R PA ++ D LP +P++ RLK+Q SP S TN + NG V DG G +R R R++ ++R+EQRLE E QRRH +E LA G+KLEN +SD+ SLGAR + KV E TQ+QV+ALEEEARTR+Q+DE R+ FRQ++ER+SG+V +A ++ E+ GTLQR+A E F T+++ + L ++G + L Q + RQ + +++ E++ + + T QLR+QV+ L++ S SD M SL Q ++ LE R Q HS+ AR E++ S+Q++Q+SL AT+ +L +R SL ELSG+MG+ AKR VE+T +PQ M+ALRGR+E EERL+ M++KS RA+E++L +RTEV RL+ R GP+A ++ L+ + AQA Q+QLTELQDALSAEITARRRNA+RLAEAQAA KEG +ES VQ S L++RCLELEELV LTRD +T QE++SSQTQ ++ + E NS+AVGKLE+SLAG + MAQ +D DR +V AR +EL+G+I +NK LLREAEERAR+ LAA E +RQ + +Q DKI G+ SEE + +A+E AM EQ +TL+E+ + G RT R +++ +++RL ++ LADA ++E V +++ +AQ Q+
Sbjct: 1 MQFEPEESGEERRRRQRDYHAFLDAQVEARSRK------PAPEDDRTDPAGNPRLPVLPLSARLKYQP--SPGSYGADSFTNFARPNGK----GPAVGDGSGCGVRGTDHRAEIAIREEHVNRIEQRLEEEVQRRHLVERNLAALGQKLENWMSDSTVSLKSLGARDEVV-------------------------------TKVQEMTQQQVKALEEEARTRIQADETRSSRFRQAVERVSGDVENLARKLEAEDNGTLQRVAKFEA-AFKGEAKGAREATKQLVAQVQALDADVAGSERK----MSSLLQSLRQIESRQREQLSVAAEARKATDGTEQLREQVRTLSAAVSGSDSKMNSLLQALQALEKRQQDQHSV-GNARKEEKVSKQQIQESLMAATSVKLDLLRSSLADELSGMMGDIAKRAVESTNVPQLMAALRGRVEHTEERLNNMADKSFRAMEDELSGVRTEVTRLEGRIDTGPIAAGLKVLSVSTKEAQAATQSQLTELQDALSAEITARRRNAVRLAEAQAATKEGGRESAVQAASGLRARCLELEELVARLTRDIKTAQEDISSQTQTQLAASQEHNSRAVGKLEESLAGIRMQMAQQVSDGDRNIARVTARVDELEGVITTNKDLLREAEERARNGLAAMEAKRQEQAKQFADKIAGVESEEMARIQAIELAMAEQGNTLKEAFETGHRTNKRRSDEIYAEVKRLEGSLRTALADAQEDESERVNSLLHQAQEQI 700
BLAST of mRNA_H-paniculata_contig11165.746.1 vs. uniprot
Match: A0A6H5KVY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY4_9PHAE) HSP 1 Score: 379 bits (972), Expect = 4.100e-111 Identity = 314/801 (39.20%), Postives = 427/801 (53.31%), Query Frame = 1
Query: 1 MQFDPEESGEDRRRRQRDYHAFLDAQVEARNRARLLLEAPAADNL--IEDAVLPSIPMTGRLKHQQLSSPSHDPYSSATNTGKSNGSLNLPPQK---VYDGGGAELRELIRRCTA--RDDMLDRLEQRLESEAQRRHSLEGTLATFGEKLENLLSDAVAKNSSLGARGAAMGEIREQTHTMGGELAVLREWRLQVDKTLALTPKVHETTQKQVQALEEEARTRMQSDEARAVNFRQSIERLSGEVNMIATRVADEEKGTLQRIANLEVN-----GFPTE-RVCY----------------VWRVLPCIISGWD---YGCVLFFVKLSQKVSNAPKRQIDAVALTGESKGSREATNQLRQQVQELTSLRSSSDDNMISLQQRVRLLENRHQGSHSMLAAARAEDERSRQEMQKSLRVATAEQLVTVRGSLVTELSGLMGETAKRVVETTGIPQDMSALRGRLEVAEERLSIMSEKSVRALEEQLHNLRTEVVRLQDRPHAGPVATSVRELAHNMATAQAVAQTQLTELQ------------DALSAEITARRRNALRLAEAQAAMKEGDKESVVQVTSSLKSRCLELEELVKDLTRDTRTIQEELSSQTQAKMLRAHEQNSKAVGKLEDSLAGENLMAQHEADVDRTWVKVNARAEELDGLINSNKTL------------------------LREAEERARSALAASETRRQVKGQQLNDKIDGLVSEEAVKREALEQAMREQAHTLRESMQAGDRTATNRLEDLQGKLQRLGEKMQAVLADALKEERRNVTTVVGEAQGQV 2199
MQF+PEESGE+RRRRQRDYHAFLDAQVEAR+R AP D + LP +P++ RLK+Q PS + Y + ++T + LP K V DG G +R R R++ +R+EQRLE E QRRH +E LA G++LEN +SD+ A SLGAR + KV E TQ+QV+ALEEEARTR+Q+DE R+ FRQ++ER+SGEV +A ++ E+ GTLQR+A EV G T CY + L + D G L + + RQ + +++ E++ + + T QLR++V L++ S SD M SL Q + LE R Q HS+ A + E+ S+Q++Q+SL AT+ +L +R SL ELSG+MG+TAKR VE+T +PQ M+ALRGR+E EERL+ M +KS RA+E++L + TE A Q+QLTELQ DALSAEITARRRNA+RLAEAQAA KEG +ES VQ S L++RCLELEELV LTRD +T QE++SSQ +D DR +V AR +EL+G+I NK L LREAEERAR+ LAA+E++RQ + +Q DKI + S E + EA+E AM EQ L+E+ + G RT R +++ +++RL ++ LADA +EE V ++ +AQ QV
Sbjct: 1 MQFEPEESGEERRRRQRDYHAFLDAQVEARSRK----SAPEDDRTDPAGNPRLPVLPLSARLKYQ----PSPETYGTDSST-----NFALPNGKGPVVGDGSGGRVRGTDHRAEVAIREEHFNRIEQRLEEEVQRRHLVERNLAALGQRLENWISDSTASLKSLGARDEVV-------------------------------TKVQEMTQQQVKALEEEARTRIQADETRSSRFRQAVERVSGEVENLARKLESEDNGTLQRVAKFEVRFKRRIGMSTLIPSCYGTTKAVFKGEAKSAREATKQLVAQVQALDDDVAGSERKMSSLLESLRQIESRQREQLSVAAEARKATDGTEQLREKVCALSAAVSRSDSKMNSLLQAHQALEKRQQDQHSVGNAIKEENV-SKQQLQESLMAATSVKLELLRSSLADELSGMMGDTAKRAVESTNVPQLMAALRGRVEHTEERLNNMVDKSFRAMEDELSGVHTE----------------------------AATQSQLTELQSYRLHVLTRRRKDALSAEITARRRNAVRLAEAQAATKEGGRESAVQAASGLRARCLELEELVARLTRDIKTAQEDISSQV--------------------------------SDGDRNIARVTARVDELEGVITINKDLVSECTLERDVSTPMFFAPYKEVEPLREAEERARNGLAATESKRQEQAKQFADKIASVESSEMARIEAIELAMTEQGDILKEAFETGHRTNKRRSDEIHAEVKRLEGSLRTELADA-QEESERVNYLLHQAQEQV 695 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11165.746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11165.746.1 >prot_H-paniculata_contig11165.746.1 ID=prot_H-paniculata_contig11165.746.1|Name=mRNA_H-paniculata_contig11165.746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=733bp MQFDPEESGEDRRRRQRDYHAFLDAQVEARNRARLLLEAPAADNLIEDAVback to top mRNA from alignment at H-paniculata_contig11165:1182..8276+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11165.746.1 ID=mRNA_H-paniculata_contig11165.746.1|Name=mRNA_H-paniculata_contig11165.746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7095bp|location=Sequence derived from alignment at H-paniculata_contig11165:1182..8276+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11165:1182..8276+ >mRNA_H-paniculata_contig11165.746.1 ID=mRNA_H-paniculata_contig11165.746.1|Name=mRNA_H-paniculata_contig11165.746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4398bp|location=Sequence derived from alignment at H-paniculata_contig11165:1182..8276+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |