mRNA_H-paniculata_contig2725.7456.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2725.7456.1
Unique NamemRNA_H-paniculata_contig2725.7456.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2725.7456.1 vs. uniprot
Match: A0A6H5KMV8_9PHAE (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMV8_9PHAE)

HSP 1 Score: 405 bits (1042), Expect = 4.850e-135
Identity = 198/291 (68.04%), Postives = 230/291 (79.04%), Query Frame = 2 
Query:    5 ERDKAFALLEGYIERESTESSGENNPSDYDRVRGLVAHMRKRLWTIP--EQENAAQQLGMDDFQLAMKEYIPGLTAKPWWEPEVFPWAKSLEQASPLIQEEYRAFREGAAFESLFRMSREGGYTSSGWTHIPLVSRREPENRYAAQRDHFPKTLEILKNLGILSKAREVMVGRQSPNSGIKMHSDGSNTVLAVHLGLDVPGEDECLLWVGVDMERRPWRNNKLLCMDTSYLHWTRNNTNADRIILLLRVWHPDMTAKERTVMEYLDSLLSHAASGKALPTHPLVLAPEEGV 871
            +RDKAF LLE YIERES   +GE    DYDR+RGLV HMRKRLW     EQE+A +QLGMDDFQ A KEYIP LT++PWWEPEVFPWA+ LE+ASP+IQEEYRA R   A +S F+ S+EGGYTS GWTHIPLV+ REP   Y AQR HFPKTL+IL++LGIL  AR V++GRQ P SGIK HSDGSN ++  HLGLDVPG++ECL+WVGV+ME R WRNNKLLC DTSYLHWTRNNT  +RIILL+ VWHPD+T KE+ V+EYLDSL+  AA+GK LP  P  L  E GV
Sbjct:   84 DRDKAFELLETYIERES--DAGERE--DYDRIRGLVPHMRKRLWKASSREQEDATEQLGMDDFQFATKEYIPNLTSRPWWEPEVFPWAQQLEEASPIIQEEYRALRAQEASDSQFKNSKEGGYTSQGWTHIPLVNAREPAEMYEAQRAHFPKTLKILEDLGILRNARAVLIGRQQPMSGIKTHSDGSNVIITCHLGLDVPGDEECLMWVGVNMESRAWRNNKLLCTDTSYLHWTRNNTEKERIILLVMVWHPDITPKEQRVLEYLDSLIRSAAAGKPLPLQPPNLV-EGGV 369
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BLAST of mRNA_H-paniculata_contig2725.7456.1 vs. uniprot
Match: D7FV35_ECTSI (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV35_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 5.970e-40
Identity = 86/226 (38.05%), Postives = 127/226 (56.19%), Query Frame = 2 
Query:  200 KEYIPGLTAKPWWEPEVFPWAKSLEQASPLIQEEYRAFREGAAFESLFRMSREGGYTSSGWTHIPLVSRRE--PENRYAAQRDHFPKTLEILKNLGILSKAREVMVGRQSPNSGIKMHSDGSNTVLAVHLGLDVPGEDECLLWVGVDMERRPWRNNKLLCMDTSYLHWTRNNTNADRIILLLRVWHPDMTAKERTVMEYLDSLLSHAASGKALPTHPLVLAPEEGV 871
            +EY+ GL AKPWWEP+ F W   +E+ S ++ +E++AF          + S        GW+ + L    E  PEN      + FPKT+++LK L I    R VM  RQ P SG+  H+DG N +L  HLG+DVP  ++C  W+ V  E+R W N K L +DTS+ H TRN++  DRI+L++  WHPD+T  E+  + ++  L +   SG+     PL    E+G+
Sbjct:  129 EEYVEGLRAKPWWEPQEFEWISEMEERSSIVIDEFKAFWNDP-LSGFAKDSVNMNIMGKGWSGVRLQRLGEWIPENC-----EKFPKTVKLLKELEIPLAVRGVMFARQVPGSGVSPHTDGRNFILTTHLGVDVP--EDC--WMRVGEEKRSWENGKALILDTSFEHETRNDSRRDRIVLIIDYWHPDLTKAEQEALAFVYDLRNKFESGEI----PLEEPEEKGL 340
[Close]
BLAST of mRNA_H-paniculata_contig2725.7456.1 vs. uniprot
Match: A0A1E7EX96_9STRA (Asp_Arg_Hydrox-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EX96_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.020e-36
Identity = 95/247 (38.46%), Postives = 137/247 (55.47%), Query Frame = 2 
Query:  200 KEYIPGLTAKPWWEPEVFPWAKSLEQASPLIQEEYRAFREGAAFESLFRMSR--EGGYTSSGWTHIPLVSRREPENRYAAQRDHFPKTLEILKNLGILSKAREVMVGRQSPNSGIKMHSDGSNTVLAVHLGLDVPGEDECLLWVGVDMERRPWRNNKLLCMDTSYLHWTRNNTNADRIILLLRVWHPDMTAKERTVMEYLDSLLSHAASGKALPTH----PLVLAPEEGV*----WCSLRGAARIGD 910
            +E+I GLTAKP+WE + F WA+SLE+ + +IQEE+ +  +    E+LF      +      GW+ I L  R    N    +   FPKT E+L++L I    R V   RQ+  SG+K HSDG N +L  HLGL VP  D C  W+ V  ER+ W   KLL +DTS++H T N T+ DR +L++  WH ++T  E+  +E++  L +   SG ++P      P+V   EEG      W S+ G A  G+
Sbjct:  113 EEHIDGLTAKPFWETKDFSWAQSLEENAHIIQEEFESKLQQE--ENLFSGDSKWQNNVMGGGWSAIRL-QRLGVWNMENCK--EFPKTYELLRSLNIPLAVRGVCFARQAGGSGVKPHSDGRNFILTSHLGLQVP--DGC--WIQVGNERKSWEKQKLLTLDTSFVHSTGNPTSDDRYVLIIDCWHSELTEPEQAALEFVYDLRNKFESG-SVPVRKLKQPVVAKEEEGAGIGGWWNSIIGGADDGN 349
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BLAST of mRNA_H-paniculata_contig2725.7456.1 vs. uniprot
Match: A0A0G4IEP4_9ALVE (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4IEP4_9ALVE)

HSP 1 Score: 144 bits (364), Expect = 3.350e-35
Identity = 78/204 (38.24%), Postives = 116/204 (56.86%), Query Frame = 2 
Query:  185 FQLAMKEYIPGLTAKPWWEPEVFPWAKSLEQASPLIQEEYRAFREGAAFESLFRMSREGGYTSSGWTHIPLVSRREPENRYAAQRDHFPKTLEILKNLGILSKAREVMVGRQSPNSGIKMHSDGSNTVLAVHLGLDVPGEDECLLWVGVDMERRPWRNNKLLCMDTSYLHWTRNNT-NADRIILLLRVWHPDMTAKERTVMEYL 793
            F     E++PGLTA+PWW+P  FPW   LE+    IQEE     +     S    S       SGW+ I L    E      A+   FPKT  +L++L +    R VM  RQ P +G+  HSDG N +L +HLGL VP +D C + VG + E + W + K L +DTS++H TRN + ++DR++L++  WHP++T +ER  ++++
Sbjct:  104 FHEPSTEFVPGLTAQPWWDPSQFPWISKLEENVETIQEELETALKNPGEFSFASDSAYSTTMGSGWSSIRLQRFGEWREENTAK---FPKTTALLRDLNVPFAPRGVMFARQVPQTGVGRHSDGLNFILTLHLGLRVP-KDLCSMKVGEE-EWKKWEDGKSLVLDTSFVHETRNESPDSDRLVLIVDFWHPELTDEEREALQFV 302
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BLAST of mRNA_H-paniculata_contig2725.7456.1 vs. uniprot
Match: A0A0G4GUD4_VITBC (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GUD4_VITBC)

HSP 1 Score: 142 bits (358), Expect = 1.190e-34
Identity = 78/197 (39.59%), Postives = 108/197 (54.82%), Query Frame = 2 
Query:  200 KEYIPGLTAKPWWEPEVFPWAKSLEQASPLIQEEYRAFREGAAFESLFRMSREGGYTSSGWTHIPLVSRRE--PENRYAAQRDHFPKTLEILKNLGILSKAREVMVGRQSPNSGIKMHSDGSNTVLAVHLGLDVPGEDECLLWVGVDMERRPWRNNKLLCMDTSYLHWTRNNTNADRIILLLRVWHPDMTAKERTVM 784
            +E++P LTA+PWW+P  FPW   LE+ SP+IQEE R+  +          S       +GW+   L    E   +NR       FP+T  +L +LGI    R VM+ RQ   SG++ HSDG N +L  HLGL VP  + C  W+ V  ERR WR NK+   DTS+ H T N T   R +L++  WHP+++  ER  +
Sbjct:   61 EEFVPRLTAQPWWDPADFPWTAQLERQSPVIQEELRSALDQPREYRFAANSAMAQTMGAGWSAFRLQRFGEWIEDNR-----QKFPRTSALLADLGIPIAMRGVMIARQRAGSGVQPHSDGRNFILTAHLGLQVP--EGC--WMRVGEERREWRENKVCVFDTSFEHETGNPTQHGRFVLIVDFWHPELSDAERNAL 248
[Close]
BLAST of mRNA_H-paniculata_contig2725.7456.1 vs. uniprot
Match: A0A7S1NW77_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1NW77_9ALVE)

HSP 1 Score: 142 bits (358), Expect = 6.720e-34
Identity = 78/197 (39.59%), Postives = 108/197 (54.82%), Query Frame = 2 
Query:  200 KEYIPGLTAKPWWEPEVFPWAKSLEQASPLIQEEYRAFREGAAFESLFRMSREGGYTSSGWTHIPLVSRRE--PENRYAAQRDHFPKTLEILKNLGILSKAREVMVGRQSPNSGIKMHSDGSNTVLAVHLGLDVPGEDECLLWVGVDMERRPWRNNKLLCMDTSYLHWTRNNTNADRIILLLRVWHPDMTAKERTVM 784
            +E++P LTA+PWW+P  FPW   LE+ SP+IQEE R+  +          S       +GW+   L    E   +NR       FP+T  +L +LGI    R VM+ RQ   SG++ HSDG N +L  HLGL VP  + C  W+ V  ERR WR NK+   DTS+ H T N T   R +L++  WHP+++  ER  +
Sbjct:  147 EEFVPRLTAQPWWDPADFPWTAQLERQSPVIQEELRSALDQPREYRFAANSAMAQTMGAGWSAFRLQRFGEWIEDNR-----QKFPRTSALLADLGIPIAMRGVMIARQRAGSGVQPHSDGRNFILTAHLGLQVP--EGC--WMRVGEERREWRENKVCVFDTSFEHETGNPTQHGRFVLIVDFWHPELSDAERNAL 334
[Close]
BLAST of mRNA_H-paniculata_contig2725.7456.1 vs. uniprot
Match: A0A7S1U6E0_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6E0_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.180e-33
Identity = 75/202 (37.13%), Postives = 104/202 (51.49%), Query Frame = 2 
Query:  182 DFQLAMKEYIPGLTAKPWWEPEVFPWAKSLEQASPLIQEEYRAFREGAAFESLFRMSREGGYTSSGWTHIPLVSRREPENRYAAQRDHFPKTLEILKNLGILSKAREVMVGRQSPNSGIKMHSDGSNTVLAVHLGLDVPGEDECLLWVGVDMERRPWRNNKLLCMDTSYLHWTRNNTNADRIILLLRVWHPDMTAKERTVME 787
            DF    +E++ GL A+PWW+   FPW   LE  +P I  E + +   AA       S +      GW+ + L    E      A    FP+T  ILK L I    R +M  RQ P SG+  HSD  N +L  HLGL VP ED    W+ V  ERR W  NK +  DTS+ H T N ++ +R++L++  WHPD++  ER  ++
Sbjct:   92 DFHQPCEEFVEGLKAQPWWDTAEFPWVAELEAQAPTIGAELQRYL--AAEAEFVCDSAQRSVMGEGWSAVRLQRMGEWRTENTAA---FPETTAILKGLDIPFAVRGIMFARQVPGSGVAPHSDARNFILTAHLGLKVP-EDPTKAWMQVGAERRNWEENKAVIFDTSFEHSTGNESDEERVVLIIDFWHPDLSLPEREALQ 287
[Close]
BLAST of mRNA_H-paniculata_contig2725.7456.1 vs. uniprot
Match: A0A7S1XP57_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XP57_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.590e-32
Identity = 79/213 (37.09%), Postives = 115/213 (53.99%), Query Frame = 2 
Query:  206 YIPGLTAKPWWEPEVFPWAKSLEQASPLIQEEYRAFREGAAFESLFRMSREG----------GYTSSG--WTHIPLVSRR-EPENRYAAQRDHFPKTLEILKNL----GILSKAREVMVGRQSPNSGIKMHSDGSNTVLAVHLGLDVPGEDECLLWVGVDMERRPWRNNKLLCMDTSYLHWTRNNTNADRIILLLRVWHPDMTAKERTVMEYL 793
            Y+ GLTAKPWW+   F W + LE+ + +I EE    R+  + E   ++  EG          G  + G  W  + L  R  +P N        FP+T EIL+ +      +  + E    RQ+P +GIK H+D +N +L  HLGLD P  D    W+ V  E++ W N K + MDTS++H T NNT+ DR +LLLRVWHP++T  ER  + ++
Sbjct:   88 YLEGLTAKPWWDTSEFKWCQRLEENADIIAEE---LRQALSDEGAKKLEAEGTNIWASAVDEGALAYGPDWKTLVLQDREWDPVNCGL-----FPRTAEILRKITADKSAVVPSVEAFFARQTPGTGIKPHTDFTNFILTAHLGLDTPTGD---CWIKVGEEKKNWENGKTILMDTSFIHSTENNTDQDRFVLLLRVWHPEVTKIEREALSFV 289
[Close]
BLAST of mRNA_H-paniculata_contig2725.7456.1 vs. uniprot
Match: D8LH75_ECTSI (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH75_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.060e-27
Identity = 79/242 (32.64%), Postives = 127/242 (52.48%), Query Frame = 2 
Query:  101 RGLVAHMRKRLWTIPEQENAAQQLGMDDFQLAMKEYIPGLTAKPWWEPEVFPWAKSLEQASPLIQEEYR---AFREGAAFESLFRMSREGGYTSSGWTHIPLVSRREPENRYAAQRDHFPKTLEILKNLGILSKAREVMVGRQSPNSGIKMHSDGSNTVLAVHLGLDVPGEDECLLWVGVDMERRPWRNNKLLCMDTSYLHWTRNNTNADRIILLLRVWHPDMTAKERTVMEYLDSLLSHAA 817
            RG+V  + ++ W     + AA              YI GL A+PW     +PW  +LE+ + +I++E R   +   G + E +     +      GW  + L +R    +  A  R  FP T  IL++ G  + + EV   RQ   SGIK H+D SN  +  HL L+VP    C + VG D E+R W+ ++++  D+S++H TRN+ ++DRIILL+R WHP +T  ER+ + ++ S L  ++
Sbjct:   76 RGMVGEVTRKKWEGKGSQVAAS-------------YIEGLEAEPWHNVARYPWIAALEKNAGIIRDELRRPSSENVGDSAEWVPAAQEDAEAYGPGWQKMVLQNR--VWDSVACSR--FPMTCAILEDCG--APSHEVFFARQRARSGIKPHTDNSNFFVTAHLPLEVPDGGGCWIRVGTD-EKREWQEDRVVTFDSSFVHETRNDASSDRIILLVRFWHPQLTQVERSALNFIFSALEDSS 297
[Close]
BLAST of mRNA_H-paniculata_contig2725.7456.1 vs. uniprot
Match: A0A835YZ42_9STRA (Aspartyl/Asparaginyl beta-hydroxylase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ42_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.280e-27
Identity = 77/206 (37.38%), Postives = 117/206 (56.80%), Query Frame = 2 
Query:  206 YIPGLTAKPWWEP---EVFPWAKSLEQASPLIQEEYRAFREGAAFE----SLFRMSREGGYTSSG--WTHIPLVSRR-EPENRYAAQRDHFPKTLEILKNLGILSKAREVMVGRQSPNSGIKMHSDGSNTVLAVHLGLDVPGEDECLLWVGVDMERRPWRNNKLLCMDTSYLHWTRNNTNADRIILLLRVWHPDMTAKERTVMEYL 793
            Y+ GL A+PW +     ++PWA  LEQ + +I  E +A       E    +++ ++      + G  W  + L  R  +P N        FPKT  I++  GI S   EV   +Q+P +GIK H+D +N +L  HLGLDVP E EC + VG   E R WRNNK+L  DTS++H T N+++  R +LL+R +HP++TA ER  ++++
Sbjct:   98 YMEGLFAEPWHDAADGNMYPWAAKLEQQAGVIASELKAVMAKKGVEKQGTNIWSVAARDDALAYGPDWRTLVLQDRVWDPVNMQL-----FPKTAAIVQECGIPSC--EVFFAKQAPRTGIKPHTDDTNFILTAHLGLDVP-EGECRMTVGD--ETREWRNNKMLIFDTSFVHSTANDSDRPRTVLLMRFFHPEVTADERRALQFI 293
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2725.7456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMV8_9PHAE4.850e-13568.04Asp_Arg_Hydrox domain-containing protein n=2 Tax=E... [more]
D7FV35_ECTSI5.970e-4038.05Asp_Arg_Hydrox domain-containing protein n=2 Tax=E... [more]
A0A1E7EX96_9STRA1.020e-3638.46Asp_Arg_Hydrox-domain-containing protein n=1 Tax=F... [more]
A0A0G4IEP4_9ALVE3.350e-3538.24Asp_Arg_Hydrox domain-containing protein n=1 Tax=C... [more]
A0A0G4GUD4_VITBC1.190e-3439.59Asp_Arg_Hydrox domain-containing protein n=1 Tax=V... [more]
A0A7S1NW77_9ALVE6.720e-3439.59Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A7S1U6E0_9STRA1.180e-3337.13Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1XP57_9STRA1.590e-3237.09Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
D8LH75_ECTSI1.060e-2732.64Asp_Arg_Hydrox domain-containing protein n=2 Tax=E... [more]
A0A835YZ42_9STRA1.280e-2737.38Aspartyl/Asparaginyl beta-hydroxylase-domain-conta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2725contigH-paniculata_contig2725:13038..19736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.8
Seed ortholog evalue3.3e-98
Seed eggNOG ortholog2880.D8LH92
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Aspartyl/Asparaginyl beta-hydroxylase
EggNOG OGs2E6F7@1,2SD50@2759
Ec32 ortholog descriptionbeta-hydroxylase, aspartyl/asparaginyl family
Ec32 orthologEc-24_001040.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1650
Cds size756
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2725.7456.1prot_H-paniculata_contig2725.7456.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2725 13814..19618 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929821.3281434-UTR-H-paniculata_contig2725:13037..138131622929821.3281434-UTR-H-paniculata_contig2725:13037..13813Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2725 13038..13813 -
1691481026.3113368-UTR-H-paniculata_contig2725:13037..138131691481026.3113368-UTR-H-paniculata_contig2725:13037..13813Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2725 13038..13813 -
1622929821.4581509-UTR-H-paniculata_contig2725:19618..197361622929821.4581509-UTR-H-paniculata_contig2725:19618..19736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2725 19619..19736 -
1691481026.3720963-UTR-H-paniculata_contig2725:19618..197361691481026.3720963-UTR-H-paniculata_contig2725:19618..19736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2725 19619..19736 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929821.3473296-CDS-H-paniculata_contig2725:13813..140241622929821.3473296-CDS-H-paniculata_contig2725:13813..14024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 13814..14024 -
1691481026.3206437-CDS-H-paniculata_contig2725:13813..140241691481026.3206437-CDS-H-paniculata_contig2725:13813..14024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 13814..14024 -
1622929821.3657362-CDS-H-paniculata_contig2725:15042..151561622929821.3657362-CDS-H-paniculata_contig2725:15042..15156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 15043..15156 -
1691481026.328403-CDS-H-paniculata_contig2725:15042..151561691481026.328403-CDS-H-paniculata_contig2725:15042..15156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 15043..15156 -
1622929821.3850944-CDS-H-paniculata_contig2725:15500..155861622929821.3850944-CDS-H-paniculata_contig2725:15500..15586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 15501..15586 -
1691481026.3388264-CDS-H-paniculata_contig2725:15500..155861691481026.3388264-CDS-H-paniculata_contig2725:15500..15586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 15501..15586 -
1622929821.4026155-CDS-H-paniculata_contig2725:16371..165391622929821.4026155-CDS-H-paniculata_contig2725:16371..16539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 16372..16539 -
1691481026.34882-CDS-H-paniculata_contig2725:16371..165391691481026.34882-CDS-H-paniculata_contig2725:16371..16539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 16372..16539 -
1622929821.4173791-CDS-H-paniculata_contig2725:16835..169791622929821.4173791-CDS-H-paniculata_contig2725:16835..16979Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 16836..16979 -
1691481026.3560028-CDS-H-paniculata_contig2725:16835..169791691481026.3560028-CDS-H-paniculata_contig2725:16835..16979Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 16836..16979 -
1622929821.4338343-CDS-H-paniculata_contig2725:19585..196181622929821.4338343-CDS-H-paniculata_contig2725:19585..19618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 19586..19618 -
1691481026.3639922-CDS-H-paniculata_contig2725:19585..196181691481026.3639922-CDS-H-paniculata_contig2725:19585..19618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 19586..19618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2725.7456.1

>prot_H-paniculata_contig2725.7456.1 ID=prot_H-paniculata_contig2725.7456.1|Name=mRNA_H-paniculata_contig2725.7456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=252bp
MRKRLWTIPEQENAAQQLGMDDFQLAMKEYIPGLTAKPWWEPEVFPWAKS
LEQASPLIQEEYRAFREGAAFESLFRMSREGGYTSSGWTHIPLVSRREPE
NRYAAQRDHFPKTLEILKNLGILSKAREVMVGRQSPNSGIKMHSDGSNTV
LAVHLGLDVPGEDECLLWVGVDMERRPWRNNKLLCMDTSYLHWTRNNTNA
DRIILLLRVWHPDMTAKERTVMEYLDSLLSHAASGKALPTHPLVLAPEEG
V*
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mRNA from alignment at H-paniculata_contig2725:13038..19736-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2725.7456.1 ID=mRNA_H-paniculata_contig2725.7456.1|Name=mRNA_H-paniculata_contig2725.7456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6699bp|location=Sequence derived from alignment at H-paniculata_contig2725:13038..19736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGGAGCGGGACAAAGCGTTTGCGTTGCTGGAGGGCTACATAGAACGGG
AGAGTACGGAATCGTCGGGTGAGAACAACCCTAGCGATTACGACCGCGTG
AGAGGATTGGTGGCACACATGCGGAAGAGGTTATGGACGATACCTGAACA
GGTGAGAGATGAGACAATTTATAGTGGATGGAAAGCAAATTCGACAATGC
ACCGCACTAGGGATTGAGATGATAGCCGTATAAAATGCATGGCAGTTGTG
CATGTCCAGTAGCATTCACACTACGGGGCGTCGATCTGCTTTATTTTGCC
GAGCGCCCCGGCAGAAACGCTGTTAGTACTACCTCTGTCCCATAAGTCTG
GCTTACAACAGTGTTTTGTAAATGTCTTCTGCAATTTGGCGTTTTGTGAA
AAATAAAGCATAGCATTCGAAAGTCTATGCGTTCAGCTTGGGTGAAGATA
TCTTCAAATTGCTTTTTGAAGTCGAAATGGTTGAGAATCGGGTATCTCAA
CACATGTTTTTTTTCGAAAATGGCAGATTCGCAAAAAACACCCGAATAGG
CCAAAATCGGCTGAAAATTATGTTTATTGGTTGATAAAGTCTCAAGGAGA
TCTCCAACTAAGAAACGGTTTGTTGCAACATACTACGTAGTATAATAAAC
TCATTGTTCATCACTGCCATCCTCCCCATCAATCCACTAATTGAAGGCCG
CGTCGTAAGCGGCTCCATCAATCGGGACCAAGTTGACCAAAAGCCCCTCG
CGCTGCCTTTTCCTGCTTCCGTTATGCTCAATGTCTAAATCGTCCCCCCG
GTGCTTTCAACAACTTGGTGTTACCGCTCAAAGAGCCTCTGCCAAATCAA
GTCTAGAGTATCCGCGTCATACTGGCGGCATGTGTCCTTAACCCCCTCTA
TGAGGGGGTCTAACGTAAGGTAGCGCTTTTTCCACAGTCTAGATTTCAGG
GATGTGAAAAAACACAAATCGTTGATATTGAGATCGGTAGACTGCACTGG
CTGCGTTACGAGCTTGATGTTCCATGCGTCCTCTCTCCCTGCCAGGTTTA
GCTTCCTCGGCGTGCCCTTGCCCGTGTGCGGGCTCGCGCCGTCCTGCTGC
ACGACCACTTCCTCCTCCTCCAATCATTGTATCGTTTCCTTGAGTGTGGA
AAGGAAGACCTTCGCGTACCGCTCCTGGTACCACGCGCTGTCGATGGTGA
CATCGACCTCGTACTCGTCACCCTTTTCGTGACGAACAGCTTGGTGTGAT
TGAGGAGCTTCGTTTGCGCTACTGTTCGTTTGGAAACTCTACGTACGTAT
AAAAAAATGTCTCACGAAAACAACTAAAAAACATGATTATCAGCCGATTT
CGACCTATTCGGTTGTTTTTCCAAAATCTGCCTTTTCCGAAAGAATGCAA
ATGTGTTGAGATACCCGGTTCTCAACCATTTCGAAATAGGAAAATATTTT
GAAAATATCTACATGCAAGCTGAACGTGCAGGCTTTCGAATGATACGCTT
CATTTCTCACAAAATCCAAAATTGCAAAAAAGATATTTACAAAATACCGT
TATAAGCCAGACTTATGGGACAAAGGTTGTATTAGTCTATTAGCCGATAC
CTTGAAGAAAACTAGAGGTGGCTTCGTTCGCAACGAACTGCCCATAGTTC
GCCACCTGCTAGATGCAATTTTGTCACTCTCTGTCTCTCTTATTTTCTCT
TATTTTCTCTTGCTCTCTTTTCCATTGGATATTTCTATCTGTGGATGGAT
CACCTACTGTCTTCGAGGTCTGTGTCTTGGTCTCCTGATGCCGCCGAAGC
CTCTAATGAGTGATGTCCGTTTTCTTTAGCAGATTTGGGCAAGGAGAGAT
CAAACCAGATCCGTGGTAGACTTGTTGTGATCCTGCTGTGCAAGGCGATC
CTTCAAGCACTCTTCAGGTTGTCTAAAGGGATGGTGAAGATCTAACAGGC
TTTTGTGTGGAAGACAAAAAATATTCCCGCAAAGGGCCACTGTTGGCATA
TCGAAATGACCAAAAATTATCCGTGTCTTCGTGGTGTGCATGTATGACGT
GAGATAAGCTTACACACATCGATGCCGTGCTGTAACGAAGCTCATATATG
TGCTGTAGTGAAGATCAAAGCAAAGCTAAAGCGAGGCGTATGCCGAAAGA
TAGCGAAGCTCAAAGATCAAAGCAGAGCTAAGTGCTGTAGTGAAGATCAA
AGCAAAGAGAAGAGTATACCGAAACACTGTCTGTTTAAAGCCTATGGGTG
CTGTTTAAAGCTTTTTGGTGCCGACAAAGCGACGCCTATACCGAAAGTAC
TAAGTCAAAGAGAGCCTAATACAAAAAGTGAGTGATCGTGGTGATGCCAC
TGACGGCGCGCTGTGGTGCGTCCGAAGAGTTATAAATATATATATATATA
TATATATGTTTATTGTCCCACGATAGGAAATGCACATTACATCCCTGGCT
TGTTGGCGACAACAACGGGGTACTCATCCCACGTCGGACAGCGTCTGTTT
TGCTTTCCGGACGCCTATCTAGCCCATTGTCGGCGCTGTTTTATCAATTC
AATACGATTGTACGAATTTCCTAGATGCAGTCCTCCGGGTGAGCAGAAAT
GTAATTGCTATAAAGGTAAAGGTACCCCCTTGCGAGACAGAGCCGAGTTT
GGAAATCCCGAGCGCTGTGTCTGCAGATAACCCGTTGGTGCGAGAACACG
GTGAAAATATACCTTAGGTAGTTTGAATATCACACTACTTTTTTCCCTTC
TGGGTAGGAAAATGCAGCGCAGCAGCTTGGCATGGATGACTTTCAACTTG
CCATGAAGGAGTACATCCCGGGACTCACAGCAAAACCGTGGTGGGAGCCA
GAGGTATTTCCGTGGGCCAAGAGCCTGGAACAAGCAAGTCCTCTTATTCA
GGTGTGCCAACTGGACTGACGTTCTCAACTCGTTAGGACACGGTAATATC
ACAAGGGAGTTGTGTGCGTGCAACAGGACGCACGGAAGAAAATGTGCCTA
TTTAGGTGCAAATGTTTAGGGGCCTGTACCGTTACACCCTATGAAAGAGC
ACAAAAAATTGCCGATCTTGGAGGAGAAAGCTCGTTAGATTGTCACCAAC
TATAACCCCCGCTTTTCGGAGGTCTCCCTACTAGGTTTTCCTATCCTTAT
TTTGGGCGTTGGGAAATAAACCATATAACCGACCACACGTGGAACAGGAG
GAATACCGTGCCTTCCGCGAAGGGGCTGCTTTTGAGTCGCTCTTTCGAAT
GAGTCGAGAGGGGGGATACACTAGCTCAGGGTGGACACACATCCCGCTTG
TGAGTCGGAGGGAGCCGGAGAATCGATATGCGGCCCAAAGAGATCACTTT
CCGAAGACACTTGAGGTGCGTGGAACTGGTGTTTAAATCGAGGTAAGAGT
AAGGTCCACCTGAAGCACACATCAGCGACTCATAGGTGCAAGGAGACAGA
GGTTCTGGTCTGTTTGTGGGGAAAGCTTTTTGTCGCGGCACCGTGGCAGA
GCCAAGCGCCACACCAAGGAAGAGCGGGGTTATGATTTTCATGTGCTCGG
TGAGACGATAAGAGAGTACACCGTAGACGGCAGTTCTGTTGGGAATACGA
GTATGGAAGGAGTCACTTGGAGGTTTCGAGGTATGTCGATTGGACCAGGC
AGGGTCAGTAGAGAGTGTTAGGTACCGCTGTCTTGTATACACGACGTAGT
GACCGACCCTCTCTACGTACGTCCCGGGTGGAAGGCCTGATGATTCGATT
CCGCCTTCGCAGGATCAAACCATCTGAACAAAGAGAAAAATGAAGTCACT
ACGATTTTGTGATCCGCAAGAATTGCGGTGAGTGATTTGCTGAATTTATA
ACCCTCCTTTAGAGGCGTTCGAACATTGGGATTGATAATTGAAGGCGAAC
ACGGTTCTGGGAGATAAGAAATGGCCTGAACAGGCGATATTCGAGGCAGA
TAGGACAGGTGAAACATGTTTGAGTCACATTTGGCAAGATAGGAAGGAGC
GATTTGGCCATCGGAAATTGCTTTGATAGGAAAAAAGCTCTGTCTTCCCG
AGGACGCATGTTCAACGGTCAAACAAGTATAGAATGCAAAACATGCCTAC
GTTCCCCTCCCTCCTTTTGCCGTTGCAAAACAATGACTAACGCCTGACAG
ATATTGAAAAACCTGGGTATCCTCTCGAAAGCGAGGGAGGTCATGGTCGG
CCGACAGTCACCGAATTCTGGAATCAAAATGCACAGGTTTGACTTAGTTA
GTTGTGAACCATCCAGTGCCAAAACAATCGTTTTCACCCCTGCAATTACG
CCCAACGCTGTATACCTCGTGTTACACAAACCTTATAAATATTACGGGAG
AAAACGTTCACAGCATTGAGTGTACTGCCAATTCCAAGAGGGAGGGTGTG
ATGCATTGTTTCTAGAGATGTGCTGTGTAATCGGTGTGCCCAATCGTTGC
TTTAAATAAAATCTCCCTCGAAGTAATGTGACAACGTATGGATATAGATA
CAACCGACAATCTTCTGCTATAAATCTACCCATTGTTCTGGTACCCCGCT
CTCTACTCCGCCGATGCTTCGCGGTATCAGTGATGGGTCTAACACCGTGC
TCGCAGTTCACTTAGGACTGGATGTGCCTGGGGAAGACGAATGCTTATTA
TGGGTGGGCGTGGACATGGAGCGACGACCCTGGCGTAACAACAAGTGAGC
CGGTGTATCCTCGGTTTTGCTTCGTACTACGTTGTCCACGAACGATACGG
CATGTCCAGTTGCGCTTTCCCATCGGAGAAGCGAGACTGGAGGATTCGTG
TTGATGTGTTCACGCAGGAAAAATTTTCAGTCATTGGTTCCGCGCTTTTG
TTTCGTTTTTCCCGCTACTAGGACTGTGATACAAGCAGGGCTGCTCGACA
GGGCCGTGGTGTGGGGTAGGCTCCTGGTCGTTGAGAAGCGTGCTTGGTGT
CAACATGTGTTCTAAAGGACGAATGCGTCCTTTCTCTTTGTAGTCGCACT
CTTATGTAGCCAGACTCTTTGTATCTTTGCCTTTAATGGGTATGCTAGCT
AACATGACTCGATGTTTACACTGTTTACCTCACGTCTGGCACAGAATCTT
TTATACACTGACGGTTGGAGCACTTCTCTTCCAGTATAATGATGCAGAAG
AGATGGCGTACATTGTTTCCAGTATTTTTTTCCCGCTCCACCGATTATTT
GTCCCCATTCGCCAACTGTACCCTTGTACAAACGCACAACACCCTTCAAC
TGACTCCTTCTCCTTTGAGGGACATACCGATCGTTTTTTTCCTAACACAA
GCTGTACCTTATCTACGCTGCCACGAGCTGCTTACACTGGGCGCACCAGA
AACTGACAAAGCAGAGTTTCCCTCTTCATAGCCCTTTTGGGATTTGAAAA
TTACTTGTGGCTTGAATACATATTGCCATAAATATTAAGAAGGACTATAT
ATGCATACCATGATCGTGGCCTGCGAAACCTCAGTATGAAGTACGCATCT
ATGTTGCAAGACTAGCCCTATAATAGTCTTGGGGCGCTTACCATATTTGT
GTATTAACGTTTTTACTGTTCAGCGTCCGGGGTCACCATGTGCATGCATG
CCTGCGTATACCATGTCAACTCATACATGTTATGTCTGTTACACATACAC
ACAACGTAACACACGCCCCGTCCTGCACGGGTTCTTTCACTGTGCTAATT
TTTCTCTGCCAGGCTTCTATGCATGGATACTAGCTATCTGCATTGGACAC
GAAACAACACCAACGCCGATCGAATAATTCTTCTTTTGAGGGTATGGCAT
CCTGATATGACTGCGAAGGAGCGGACGGTGATGGAGTATCTCGATTCTCT
GCTGAGCCACGCTGCTAGCGGGAAAGCCTTGCCTACTCATCCGCTCGTTC
TTGCACCAGAGGAAGGGGTGTAATGGTGTAGTCTTCGTGGTGCTGCGAGA
ATAGGGGATATTTCCTTCATATTGCGGGATGTGCTGTAGTATTGTGCGCT
TCTCATGTAAAGCATTGTGAATGTTAAATACCTCTCGTGCTATGGTGGGA
TTTATTTACGTTTGACAACTTTGAATATGAGAAATGGCATGTTGGCGTTT
GATAATAGTAGCTACACGGGAGTATACATTTAACCGTTTTAAAACCGGAG
GATGTTTTTAGAACAATAAAGGTATAGTCTAGAGTATGACAAAAACATAT
CTAGCATTGCAGTCGTTGTGGGTAGAATCAGACCAACCATCTGTCTGTGC
TATATGTACTGCCCATATTGAACTGTCTGTCAGAACAGCGGTGGTCCCCT
TTCTTTATGATCATATCGCAGGCGTCGCTTTCCCCTGTTTTTGAGTAGAA
CCCCGCGTTAGCCCATGCTGCGTCGGCCGTAGTGGTCATAGGTTTCGGTC
ATGCATTTCATCGCCTTTTCTGGCACCGTTTGGAGGCCGTGTGCAGTATC
TAGAGCTAGTACGCTTTCTTGGCTGTTCGCTACTACCGTGCCGCCACTTG
AAACTGCAAACTGTTCGTGTGTCGGCGAGAAAATACAGCTTGTTAGATGC
ACTGTGCTCTCTTAGACCGCACGCTACAGAAGCGCGCGCCATCTCTCCCA
TGCTTCATTTCTTGATGTAGAACCGTGCTGGGGGCACGTGGTGTCCAAGC
TCACAGCAGCAATATTTTGAGGGGTGGAGATACACACGCAAAGAGCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig2725:13038..19736-

>mRNA_H-paniculata_contig2725.7456.1 ID=mRNA_H-paniculata_contig2725.7456.1|Name=mRNA_H-paniculata_contig2725.7456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at H-paniculata_contig2725:13038..19736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGAAGAGGTTATGGACGATACCTGAACAGATGCGGAAGAGGTTATG
GACGATACCTGAACAGGAAAATGCAGCGCAGCAGCTTGGCATGGATGACT
TTCAACTTGCCATGAAGGAGTACATCCCGGGACTCACAGCAAAACCGTGG
TGGGAGCCAGAGGTATTTCCGTGGGCCAAGAGCCTGGAACAAGCAAGTCC
TCTTATTCAGGAAAATGCAGCGCAGCAGCTTGGCATGGATGACTTTCAAC
TTGCCATGAAGGAGTACATCCCGGGACTCACAGCAAAACCGTGGTGGGAG
CCAGAGGTATTTCCGTGGGCCAAGAGCCTGGAACAAGCAAGTCCTCTTAT
TCAGGAGGAATACCGTGCCTTCCGCGAAGGGGCTGCTTTTGAGTCGCTCT
TTCGAATGAGTCGAGAGGGGGGATACACTAGCTCAGGGTGGACACACATC
CCGCTTGTGAGTCGGAGGGAGCCGGAGAATCGATATGCGGCCCAAAGAGA
TCACTTTCCGAAGACACTTGAGGAGGAATACCGTGCCTTCCGCGAAGGGG
CTGCTTTTGAGTCGCTCTTTCGAATGAGTCGAGAGGGGGGATACACTAGC
TCAGGGTGGACACACATCCCGCTTGTGAGTCGGAGGGAGCCGGAGAATCG
ATATGCGGCCCAAAGAGATCACTTTCCGAAGACACTTGAGATATTGAAAA
ACCTGGGTATCCTCTCGAAAGCGAGGGAGGTCATGGTCGGCCGACAGTCA
CCGAATTCTGGAATCAAAATGCACAGATATTGAAAAACCTGGGTATCCTC
TCGAAAGCGAGGGAGGTCATGGTCGGCCGACAGTCACCGAATTCTGGAAT
CAAAATGCACAGTGATGGGTCTAACACCGTGCTCGCAGTTCACTTAGGAC
TGGATGTGCCTGGGGAAGACGAATGCTTATTATGGGTGGGCGTGGACATG
GAGCGACGACCCTGGCGTAACAACAATGATGGGTCTAACACCGTGCTCGC
AGTTCACTTAGGACTGGATGTGCCTGGGGAAGACGAATGCTTATTATGGG
TGGGCGTGGACATGGAGCGACGACCCTGGCGTAACAACAAGCTTCTATGC
ATGGATACTAGCTATCTGCATTGGACACGAAACAACACCAACGCCGATCG
AATAATTCTTCTTTTGAGGGTATGGCATCCTGATATGACTGCGAAGGAGC
GGACGGTGATGGAGTATCTCGATTCTCTGCTGAGCCACGCTGCTAGCGGG
AAAGCCTTGCCTACTCATCCGCTCGTTCTTGCACCAGAGGAAGGGGTGTA
AGCTTCTATGCATGGATACTAGCTATCTGCATTGGACACGAAACAACACC
AACGCCGATCGAATAATTCTTCTTTTGAGGGTATGGCATCCTGATATGAC
TGCGAAGGAGCGGACGGTGATGGAGTATCTCGATTCTCTGCTGAGCCACG
CTGCTAGCGGGAAAGCCTTGCCTACTCATCCGCTCGTTCTTGCACCAGAG
GAAGGGGTGTAA
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