mRNA_H-paniculata_contig2725.7454.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2725.7454.1
Unique NamemRNA_H-paniculata_contig2725.7454.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2725.7454.1 vs. uniprot
Match: A0A6H5KPV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV7_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.450e-16
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:    3 WQQCYALITRMRERGIVLDPHLDHGTIVRICAEVGVRVEELDSSSAGPAQERL-LGD-RDEEVGED 194
            WQQC++L+  MR+RGIVLDP+LDHG + R+C EVGV VEELD S  GPAQ  +  GD  ++EVGE+
Sbjct:  621 WQQCHSLMGSMRDRGIVLDPYLDHGVLARVCQEVGVPVEELDPSGVGPAQSGVDFGDDAEDEVGEE 686
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BLAST of mRNA_H-paniculata_contig2725.7454.1 vs. uniprot
Match: D8LH96_ECTSI (Intraflagellar transport protein 140 puative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH96_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.300e-15
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:    3 WQQCYALITRMRERGIVLDPHLDHGTIVRICAEVGVRVEELDSSSAGPAQERL-LGD-RDEEVGED 194
            WQQC++L+  MR+RGIVLDP+LDHG + R+C EVGV VEELD S AG AQ  +  GD  ++EVGE+
Sbjct: 1570 WQQCHSLMGSMRDRGIVLDPYLDHGVLARVCQEVGVPVEELDPSGAGLAQAGVGFGDDAEDEVGEE 1635
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2725.7454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPV7_9PHAE1.450e-1660.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH96_ECTSI1.300e-1560.61Intraflagellar transport protein 140 puative n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2725contigH-paniculata_contig2725:6936..7910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue5.3e-09
Seed eggNOG ortholog2880.D8LH96
Preferred nameIFT140
KEGG koko:K19672
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001501,GO:0001654,GO:0001655,GO:0001750,GO:0002119,GO:0002164,GO:0003002,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0006996,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007568,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008340,GO:0008589,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009966,GO:0009987,GO:0010259,GO:0010638,GO:0010646,GO:0010970,GO:0015630,GO:0016043,GO:0021532,GO:0021915,GO:0022008,GO:0022607,GO:0022611,GO:0023051,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030326,GO:0030705,GO:0030990,GO:0030991,GO:0031076,GO:0031344,GO:0031346,GO:0031503,GO:0032386,GO:0032388,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035721,GO:0035735,GO:0035845,GO:0035869,GO:0036064,GO:0040024,GO:0042073,GO:0042461,GO:0042733,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043053,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048583,GO:0048598,GO:0048666,GO:0048699,GO:0048701,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051270,GO:0051272,GO:0051641,GO:0051649,GO:0055115,GO:0060041,GO:0060173,GO:0060271,GO:0060341,GO:0060429,GO:0060491,GO:0060632,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072001,GO:0072359,GO:0097014,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1904888,GO:1905515,GO:1905796,GO:1905798,GO:1905799,GO:1905801,GO:1990403
EggNOG free text desc.intraciliary retrograde transport
EggNOG OGsKOG3617@1,KOG3617@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons3
Model size197
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2725.7454.1prot_H-paniculata_contig2725.7454.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2725 7203..7910 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929821.1339118-UTR-H-paniculata_contig2725:6935..69661622929821.1339118-UTR-H-paniculata_contig2725:6935..6966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2725 6936..6966 +
1691481026.254061-UTR-H-paniculata_contig2725:6935..69661691481026.254061-UTR-H-paniculata_contig2725:6935..6966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2725 6936..6966 +
1622929821.1465247-UTR-H-paniculata_contig2725:7201..72021622929821.1465247-UTR-H-paniculata_contig2725:7201..7202Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2725 7202..7202 +
1691481026.2713127-UTR-H-paniculata_contig2725:7201..72021691481026.2713127-UTR-H-paniculata_contig2725:7201..7202Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2725 7202..7202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929821.1626751-CDS-H-paniculata_contig2725:7202..73221622929821.1626751-CDS-H-paniculata_contig2725:7202..7322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 7203..7322 +
1691481026.279041-CDS-H-paniculata_contig2725:7202..73221691481026.279041-CDS-H-paniculata_contig2725:7202..7322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 7203..7322 +
1622929821.19196-CDS-H-paniculata_contig2725:7865..79101622929821.19196-CDS-H-paniculata_contig2725:7865..7910Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 7866..7910 +
1691481026.2864964-CDS-H-paniculata_contig2725:7865..79101691481026.2864964-CDS-H-paniculata_contig2725:7865..7910Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 7866..7910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2725.7454.1

>prot_H-paniculata_contig2725.7454.1 ID=prot_H-paniculata_contig2725.7454.1|Name=mRNA_H-paniculata_contig2725.7454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MRERGIVLDPHLDHGTIVRICAEVGVRVEELDSSSAGPAQERLLGDRDEE
VGEDL
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mRNA from alignment at H-paniculata_contig2725:6936..7910+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2725.7454.1 ID=mRNA_H-paniculata_contig2725.7454.1|Name=mRNA_H-paniculata_contig2725.7454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=975bp|location=Sequence derived from alignment at H-paniculata_contig2725:6936..7910+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGGCAACAGTGCTACGCTCTCATAACCAGGTGCTGTTTAATGACTGCG
CGACATTCAAGCAATCTAGTGTAGATATGATTGTCATTACCTTGGGTCCA
GCAGACATGTAGGCGTCTCTACCACCAGGAGAACGGGTGGGCTTTGGTAT
TATCTCCCGACAGAAAAGCCTAGTAGAGGCAACGTCGTTCTCTCGTCACC
TTTGAAAGTGCACCGTTTTCTCTCTCCCGTCCTTCATACTTATATAACGC
TTGTCGCCGGTTGCAGGATGCGCGAACGAGGCATTGTATTAGACCCGCAC
CTTGATCATGGTACTATCGTGAGAATATGTGCCGAGGTCGGCGTGCGTGT
CGAGGAGCTCGATTCATCGTCTGCCGGTCCTGCTCAGGTCAGTTTCTTGC
CCGTAGTTCCGACTAGTGCTATGCTTCAGGATATAATCTGGATATAGAAT
CACGAATGGTTCACTCGCAGCGGGGTGTTGGATTTTTGTATCATGAGATT
TTACCACTAGGGAGGGAACATATAGATGCCGCGCGTCCCCCGGCAGTTGA
ACCATCATACAATATTCATAGAAAAAATATATCCTCATCGAAAGCACCAT
CACTTACAAGTGGGGAATGAGTACAAGGGATCCCAGGAGGCGGTGGATGG
ATGTCCTATGTCGTTCCTCCCCTTGATACGTACAAAATTATTCTGCTGCA
GAATCTATCCTATCGAATACCTGATATTTCCGAGGCGTTGCTATTATTAC
GCTCACCAACTATGGTTCTACTTTTTGTCGTTCATGTTTTGACATGGTGA
GTGGTGTTCTCAAGGAATATATCTTGCTCTCAGGCGAGGCTTTAACGGTG
AATGTTCTTCTATCCAGAGTTGATCCACCCAGATTCAGGTCTCAAGTGGA
TTCCATCCCCTAACACGCGCTACGTGACAGGAGAGGTTGCTGGGTGATCG
TGATGAAGAGGTAGGAGAAGACCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig2725:6936..7910+

>mRNA_H-paniculata_contig2725.7454.1 ID=mRNA_H-paniculata_contig2725.7454.1|Name=mRNA_H-paniculata_contig2725.7454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig2725:6936..7910+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCGAACGAGGCATTGTATTAGACCCGCACCTTGATCATGGTACTAT
CGTGAGAATATGTGCCGAGGTCGGCGTGCGTGTCGAGGAGCTCGATTCAT
CGTCTGCCGGTCCTGCTCAGATGCGCGAACGAGGCATTGTATTAGACCCG
CACCTTGATCATGGTACTATCGTGAGAATATGTGCCGAGGTCGGCGTGCG
TGTCGAGGAGCTCGATTCATCGTCTGCCGGTCCTGCTCAGGAGAGGTTGC
TGGGTGATCGTGATGAAGAGGTAGGAGAAGACCTTGAGAGGTTGCTGGGT
GATCGTGATGAAGAGGTAGGAGAAGACCTT
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