mRNA_H-paniculata_contig2725.7452.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2725.7452.1
Unique NamemRNA_H-paniculata_contig2725.7452.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2725.7452.1 vs. uniprot
Match: A0A6H5KPV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV7_9PHAE)

HSP 1 Score: 350 bits (898), Expect = 6.390e-114
Identity = 179/239 (74.90%), Postives = 208/239 (87.03%), Query Frame = 1
Query:    1 VGDTAGAIEHYEIAGTHCAEVPRMLFERDRVEDLEEYITQGNNTELLKWWSQYMESRGEFEKARQHYTRAQDFLSVVRLACQSGDVEG-----AVDIVNDSGSAPAAYHLARHLEALGRTAEAVAFYTRSSRFNHAIRLAKDHGMDSELMGFALQSRPALMVSVAEHLERKGEMEKAVQLYQKAGDVARALDVCFRA-AMGDE-------RGEGRR-PGMFDTLKAMTDDLGTNASPQV 675
            VGDTAGAI+HYE+AGTHC EVPRML+ER RVEDLEEYITQGNN +LLKWWSQY+ESRGEFEKAR+ YTRAQD+LS+VRLACQ G VE      A++IVN+SGSAPAAYHLARHLEA+GRTAEAV+FY RS+RFNHAIRLAKDHGMDSELMGFAL+SRP+LMVSVA++L+ KGE+EKAVQLYQKAG+V +ALD+CFR+ A G E        GEG + P MF+ LK+M DDLG++ASPQV
Sbjct:  101 VGDTAGAIQHYELAGTHCVEVPRMLYERGRVEDLEEYITQGNNVQLLKWWSQYLESRGEFEKARKTYTRAQDYLSLVRLACQGGQVERVRHRQAIEIVNESGSAPAAYHLARHLEAVGRTAEAVSFYARSNRFNHAIRLAKDHGMDSELMGFALKSRPSLMVSVADYLQDKGELEKAVQLYQKAGEVTKALDLCFRSGAAGGEADQKHGGEGEGEKSPAMFEALKSMMDDLGSHASPQV 339          
BLAST of mRNA_H-paniculata_contig2725.7452.1 vs. uniprot
Match: D8LH96_ECTSI (Intraflagellar transport protein 140 puative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH96_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 4.780e-108
Identity = 180/239 (75.31%), Postives = 207/239 (86.61%), Query Frame = 1
Query:    1 VGDTAGAIEHYEIAGTHCAEVPRMLFERDRVEDLEEYITQGNNTELLKWWSQYMESRGEFEKARQHYTRAQDFLSVVRLACQSGDVEG-----AVDIVNDSGSAPAAYHLARHLEALGRTAEAVAFYTRSSRFNHAIRLAKDHGMDSELMGFALQSRPALMVSVAEHLERKGEMEKAVQLYQKAGDVARALDVCFR--AAMGDE------RGEGRR-PGMFDTLKAMTDDLGTNASPQV 675
            VGDTAGAI+HYE+AGTHC EVPRML+ER RVEDLEEYITQGNN +LLKWWSQY+ESRGEFEKAR+ YTRAQD+LS+VRLACQ G VE      A+ IVN+SGSAPAAYHLARHLEA+GRTAEAV+FY RS+RFNHAIRLAKDHGMDSELMGFAL+SRP+LMVSVA++L+ KGE+EKAVQLYQKAG+V +ALD+CFR  AA G+        GEG R P MF+ LK+M DDLG++ASPQV
Sbjct: 1050 VGDTAGAIQHYELAGTHCVEVPRMLYERGRVEDLEEYITQGNNVQLLKWWSQYLESRGEFEKARKTYTRAQDYLSLVRLACQGGQVERVRHRQAIGIVNESGSAPAAYHLARHLEAVGRTAEAVSFYARSNRFNHAIRLAKDHGMDSELMGFALKSRPSLMVSVADYLQDKGELEKAVQLYQKAGEVTKALDLCFRSGAASGEADQKHGGEGEGERSPAMFEALKSMMDDLGSHASPQV 1288          
BLAST of mRNA_H-paniculata_contig2725.7452.1 vs. uniprot
Match: A0A7S1UFU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFU4_9STRA)

HSP 1 Score: 257 bits (657), Expect = 1.890e-80
Identity = 130/225 (57.78%), Postives = 166/225 (73.78%), Query Frame = 1
Query:    1 VGDTAGAIEHYEIAGTHCAEVPRMLFERDRVEDLEEYITQGNNTELLKWWSQYMESRGEFEKARQHYTRAQDFLSVVRLACQSGDVEGAVDIVNDSGSAPAAYHLARHLEALGRTAEAVAFYTRSSRFNHAIRLAKDHGMDSELMGFALQSRPALMVSVAEHLERKGEMEKAVQLYQKAGDVARALDVCFRAAMGDERGEGRRPGMFDTLKAMTDDLGTNASPQV 675
            +G+   A  HYE A TH  EVPRMLFE+ R+EDLE+YI +  ++EL +WW+ Y ES  +F+KAR +Y RA D LS VRLAC + D+E A DI+ND+ SA AAYH+ARHLE +    EA+ +YT+S  +NHAIRLAK HG+D+ELM FAL+SRP+LMV  A + E+KGE+EKAVQLYQK GD+ +ALD+CFRA       EGRR  MFD L+ +TD+LG   SPQV
Sbjct:  198 IGEYKAAARHYESAETHRKEVPRMLFEQHRLEDLEKYIVRAGDSELQRWWAAYCESVSDFDKARAYYKRAGDNLSRVRLACYNRDLERAADIINDTKSASAAYHMARHLEGINEIREAIVYYTKSGCYNHAIRLAKAHGLDAELMSFALKSRPSLMVDCAAYFEKKGEIEKAVQLYQKGGDIPKALDLCFRAGA-----EGRR-SMFDVLRNITDELGATTSPQV 416          
BLAST of mRNA_H-paniculata_contig2725.7452.1 vs. uniprot
Match: A0A7S3Y5S0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5S0_HETAK)

HSP 1 Score: 249 bits (636), Expect = 1.880e-75
Identity = 132/224 (58.93%), Postives = 160/224 (71.43%), Query Frame = 1
Query:    4 GDTAGAIEHYEIAGTHCAEVPRMLFERDRVEDLEEYITQGNNTELLKWWSQYMESRGEFEKARQHYTRAQDFLSVVRLACQSGDVEGAVDIVNDSGSAPAAYHLARHLEALGRTAEAVAFYTRSSRFNHAIRLAKDHGMDSELMGFALQSRPALMVSVAEHLERKGEMEKAVQLYQKAGDVARALDVCFRAAMGDERGEGRRPGMFDTLKAMTDDLGTNASPQV 675
            GD AGAI+HYE AGTH  EVPRMLFER RV+DLE YITQG + +LLKWW+ Y+ES+G  +KAR+ Y  A+D L++VRLAC + D E A  +V  SGS  AAYHLAR  EA G   EAV  Y  S R+NHAIRLAK +GMD EL+GFAL+S PA  V VA + E KGE EKAV+LYQK GD  +ALD+CF+A       EGR+ G+FD L+ + + LG   SPQV
Sbjct:   98 GDGAGAIQHYEAAGTHQTEVPRMLFERRRVDDLEHYITQGKDPKLLKWWAGYLESKGALDKARRFYAGAEDHLALVRLACYNQDFEEARRLVEKSGSRAAAYHLARQHEARGEVQEAVGQYAASGRYNHAIRLAKAYGMDLELVGFALKSDPAQTVDVARYFELKGEYEKAVELYQKGGDAPKALDLCFKAGA-----EGRK-GVFDALRQIAEGLGEETSPQV 315          
BLAST of mRNA_H-paniculata_contig2725.7452.1 vs. uniprot
Match: A0A835YKN9_9STRA (Putative intraflagellar transport protein 140 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN9_9STRA)

HSP 1 Score: 241 bits (616), Expect = 7.160e-70
Identity = 127/228 (55.70%), Postives = 160/228 (70.18%), Query Frame = 1
Query:    1 VGDTAGAIEHYEIAGTHCAEVPRMLFERDRVEDLEEYITQGNNTELLKWWSQYMESRGEFEKARQHYTRAQDFLSVVRLACQSGDVEGAVDIVNDSGSAPAAYHLARHLEALGRTAEAVAFYTRSSRFNHAIRLAKDHGMDSELMGFALQSRPALMVSVAEHLERKGEMEKAVQLYQKAGDVARALDVCFRAAMGDERGEGRRPGMFDTLKAMTDDLGT---NASPQV 675
            +GDT GAI+HYE A TH  EVPRML ER R+ +LE YI    + EL+KWW++Y ES G+   AR  Y RA D LS+VRLAC +GD+  A  IV D+GS  AAYHLAR  E  G   EAVA Y RS  +NHA+RLAK HGMD+ELM FA+QSRP+LMV  A++ E KGE++KAVQLY K GDVA AL++CF+A      G   + GMF+ L+A+T++LG    + +PQV
Sbjct:  928 LGDTEGAIKHYEDADTHRTEVPRMLLERGRLGELEAYIASRGDPELVKWWAKYCESIGDHAAARLFYARAADHLSLVRLACYAGDMNKAAAIVRDTGSVAAAYHLARQHEGRGEWQEAVALYARSRCYNHAMRLAKSHGMDAELMSFAMQSRPSLMVDAAQYFEDKGELDKAVQLYHKGGDVAHALEICFKA------GADGQTGMFELLRAITEELGQASGSTNPQV 1149          
BLAST of mRNA_H-paniculata_contig2725.7452.1 vs. uniprot
Match: A0A7S2RUZ9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUZ9_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.190e-64
Identity = 113/224 (50.45%), Postives = 155/224 (69.20%), Query Frame = 1
Query:    1 VGDTAGAIEHYEIAGTHCAEVPRMLFERDRVEDLEEYITQGNNTELLKWWSQYMESRGEFEKARQHYTRAQDFLSVVRLACQSGDVEGAVDIVNDSGSAPAAYHLARHLEALGRTAEAVAFYTRSSRFNHAIRLAKDHGMDSELMGFALQSRPALMVSVAEHLERKGEMEKAVQLYQKAGDVARALDVCFRAAMGDERGEGRRPGMFDTLKAMTDDLGTNASPQ 672
            VGD + A++H+E A TH  +VPRML +R R+ DLEEYI + ++ ELLKWW+ Y E+ G+F+KAR  Y RAQD  S++R+AC +G+   A  I+ +SG A AAY LAR+LE      EA+ +Y  S  +NHAIRLA++ G+D ELM FAL++   LM+  A+H E KG++EKAVQLYQK GD+ +ALD+CFRA      G+GR   MFD L+ +  +L  N +PQ
Sbjct:  750 VGDISSAVKHFEHADTHRTQVPRMLSDRKRLTDLEEYIARSSDPELLKWWAGYCEAHGQFDKARHFYYRAQDHFSLIRIACVNGETARAKQIIEESGDASAAYFLARYLEGHNEIQEAINYYAVSKCYNHAIRLARNFGLDGELMSFALKASEPLMIDCAQHFESKGDLEKAVQLYQKGGDIPKALDLCFRAG-----GQGRS-SMFDVLQTIAGELDENTNPQ 967          
BLAST of mRNA_H-paniculata_contig2725.7452.1 vs. uniprot
Match: A0A7S2CPX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPX6_9STRA)

HSP 1 Score: 223 bits (567), Expect = 3.610e-64
Identity = 113/231 (48.92%), Postives = 159/231 (68.83%), Query Frame = 1
Query:    1 VGDTAGAIEHYEIAGTHCAEVPRMLFERDRVE-------DLEEYITQGNNTELLKWWSQYMESRGEFEKARQHYTRAQDFLSVVRLACQSGDVEGAVDIVNDSGSAPAAYHLARHLEALGRTAEAVAFYTRSSRFNHAIRLAKDHGMDSELMGFALQSRPALMVSVAEHLERKGEMEKAVQLYQKAGDVARALDVCFRAAMGDERGEGRRPGMFDTLKAMTDDLGTNASPQ 672
            +GD  GA++H+E+A TH  EVPRMLF+  +V         LEEYI   ++ EL+KWW+ Y ES G+++KAR  Y RAQ++ S+VR+AC + ++  A +IV ++ +A AAY+LAR+LE +    EA+ +Y +S  +NHAIRLAK+ G+DSELM +A++SRP+LMV  A + E KGE EKAVQLYQK GD+ +ALD+CF+A      G   R  MF+ LK + +DL    SPQ
Sbjct:  352 IGDINGAVKHFELADTHRTEVPRMLFDLSQVSRDPKVLSKLEEYIAHSSDPELIKWWAGYCESIGQYDKARHFYHRAQNYFSLVRIACFNREIPRAKNIVEETNNAAAAYYLARYLEGMTEVQEAINYYAQSGCYNHAIRLAKNFGLDSELMSYAIKSRPSLMVECAVYFESKGEFEKAVQLYQKGGDIPKALDLCFKA------GSQGRTSMFEVLKNIANDLDDQTSPQ 576          
BLAST of mRNA_H-paniculata_contig2725.7452.1 vs. uniprot
Match: A0A4Q5XS05_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q5XS05_9DELT)

HSP 1 Score: 204 bits (518), Expect = 6.330e-61
Identity = 103/235 (43.83%), Postives = 146/235 (62.13%), Query Frame = 1
Query:    4 GDTAGAIEHYEIAGTHCAEVPRMLFERDRVEDLEEYITQGNNTELLKWWSQYMESRGEFEKARQHYTRAQDFLSVVRLACQSGDVEGAVDIVNDSGSAPAAYHLARHLEALGRTAEAVAFYTRSSRFNHAIRLAKDHGMDSELMGFALQSRPALMVSVAEHLERKGEMEKAVQLYQKAGDVARALDVCFRAAMGDERGEGRRPGM-----------FDTLKAMTDDLGTNASPQV 675
            G  + A E Y++A     EVPRMLF  DRV++L +YI    N  LLKWW+ Y+ES    +KA+++Y +A+D+LS+VR+AC   D   A +++  SG   +AYH AR LE  G   EA++FY  +  F+H IRL K HG+D ELM +AL+S P  MV  AE+ E KGE +KA++L+ K  D+A AL++CFR  +G+E      PG            F+T+ A+  DLG N+SPQ+
Sbjct:   81 GQVSEATECYKLAAVDHVEVPRMLFYLDRVDELNDYIVHSENALLLKWWASYLESIDRLDKAKKYYAKAKDYLSLVRIACFQSDFTTAAEVITQSGDKASAYHFARQLEHAGEFQEAISFYALAGCFHHCIRLCKAHGIDGELMRYALKSTPVYMVQCAEYYEAKGEFDKAIELFYKGQDIAYALELCFR--IGEEMSTANAPGKKIAQHPYAAAAFETINAIAQDLGVNSSPQL 313          
BLAST of mRNA_H-paniculata_contig2725.7452.1 vs. uniprot
Match: A0A061REQ7_9CHLO (Intraflagellar transport protein 140-like (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061REQ7_9CHLO)

HSP 1 Score: 211 bits (538), Expect = 3.900e-60
Identity = 105/219 (47.95%), Postives = 146/219 (66.67%), Query Frame = 1
Query:   19 AIEHYEIAGTHCAEVPRMLFERDRVEDLEEYITQGNNTELLKWWSQYMESRGEFEKARQHYTRAQDFLSVVRLACQSGDVEGAVDIVNDSGSAPAAYHLARHLEALGRTAEAVAFYTRSSRFNHAIRLAKDHGMDSELMGFALQSRPALMVSVAEHLERKGEMEKAVQLYQKAGDVARALDVCFRAAMGDERGEGRRPGMFDTLKAMTDDLGTNASPQV 675
            AI  YE++ TH  EVPRMLFE +++E+L +YI + N  +L KWW++Y ES G+F++AR HY  A D+LSVVRL C   D+E A  IVN++    AA+HL R +EA G   EAV FY+RS RF+HA+RLA+ HGM+ ELM  ALQS P +M+  A +L ++GE  KAVQLYQ+ G   RALD+CF+              +F+ L+ + D+L T++ P +
Sbjct:  305 AIREYELSNTHFFEVPRMLFETNQIEELRKYIEKSNEPKLTKWWARYNESLGQFDEARNHYEAAGDYLSVVRLLCFQNDLESARAIVNETNDPAAAFHLGRQMEAQGIVKEAVMFYSRSKRFSHAVRLARKHGMNRELMNLALQSTPRVMIDTANYLSQQGEYGKAVQLYQRGGCQGRALDICFKG------------NLFEELELIADELNTDSDPSL 511          
BLAST of mRNA_H-paniculata_contig2725.7452.1 vs. uniprot
Match: A0A7S3GS04_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GS04_9STRA)

HSP 1 Score: 210 bits (535), Expect = 5.500e-59
Identity = 101/218 (46.33%), Postives = 152/218 (69.72%), Query Frame = 1
Query:   19 AIEHYEIAGTHCAEVPRMLFERDRVEDLEEYITQGNNTELLKWWSQYMESRGEFEKARQHYTRAQDFLSVVRLACQSGDVEGAVDIVNDSGSAPAAYHLARHLEALGRTAEAVAFYTRSSRFNHAIRLAKDHGMDSELMGFALQSRPALMVSVAEHLERKGEMEKAVQLYQKAGDVARALDVCFRAAMGDERGEGRRPGMFDTLKAMTDDLGTNASPQ 672
            AIEHY ++G    EVPRMLF+ DRV++L +++ Q ++  LLKWW+ Y+ES   ++KA+++Y++A+D+LS+VR+AC  GD   A +IV ++    +AYH AR LE  G+  +A+ FY  S  +NH+IRLA+ + +D+ELM +AL+S PALM+  A H E++ E +KAVQLY K GD+ RALD+CFRA  G++        ++D L  +  DLG ++SPQ
Sbjct: 1017 AIEHYGLSGNSHTEVPRMLFQLDRVDELGDFVLQSDDPVLLKWWAAYLESIERYDKAKKYYSKARDYLSLVRIACFKGDFNKAAEIVAETNDRASAYHFARQLENQGQYNDAITFYASSGCYNHSIRLARAYNLDTELMRYALKSTPALMIECAVHFEQRREFDKAVQLYHKGGDIPRALDLCFRA--GEDPSYANNTLVYDMLNTIAQDLGADSSPQ 1232          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2725.7452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPV7_9PHAE6.390e-11474.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH96_ECTSI4.780e-10875.31Intraflagellar transport protein 140 puative n=1 T... [more]
A0A7S1UFU4_9STRA1.890e-8057.78Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3Y5S0_HETAK1.880e-7558.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YKN9_9STRA7.160e-7055.70Putative intraflagellar transport protein 140 n=1 ... [more]
A0A7S2RUZ9_9STRA1.190e-6450.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CPX6_9STRA3.610e-6448.92Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A4Q5XS05_9DELT6.330e-6143.83Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]
A0A061REQ7_9CHLO3.900e-6047.95Intraflagellar transport protein 140-like (Fragmen... [more]
A0A7S3GS04_9STRA5.500e-5946.33Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2725contigH-paniculata_contig2725:2131..3406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score352.4
Seed ortholog evalue1.5e-94
Seed eggNOG ortholog2880.D8LH96
Preferred nameIFT140
KEGG koko:K19672
Hectar predicted targeting categoryother localisation
GOsGO:0001501,GO:0001654,GO:0001655,GO:0001750,GO:0002119,GO:0002164,GO:0003002,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0006996,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007568,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008340,GO:0008589,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009966,GO:0009987,GO:0010259,GO:0010638,GO:0010646,GO:0010970,GO:0015630,GO:0016043,GO:0021532,GO:0021915,GO:0022008,GO:0022607,GO:0022611,GO:0023051,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030326,GO:0030705,GO:0030990,GO:0030991,GO:0031076,GO:0031344,GO:0031346,GO:0031503,GO:0032386,GO:0032388,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035721,GO:0035735,GO:0035845,GO:0035869,GO:0036064,GO:0040024,GO:0042073,GO:0042461,GO:0042733,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043053,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048583,GO:0048598,GO:0048666,GO:0048699,GO:0048701,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051270,GO:0051272,GO:0051641,GO:0051649,GO:0055115,GO:0060041,GO:0060173,GO:0060271,GO:0060341,GO:0060429,GO:0060491,GO:0060632,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072001,GO:0072359,GO:0097014,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1904888,GO:1905515,GO:1905796,GO:1905798,GO:1905799,GO:1905801,GO:1990403
EggNOG free text desc.intraciliary retrograde transport
EggNOG OGsKOG3617@1,KOG3617@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons4
Model size675
Cds size675
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2725.7452.1prot_H-paniculata_contig2725.7452.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2725 2131..3406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929820.933001-CDS-H-paniculata_contig2725:2130..22501622929820.933001-CDS-H-paniculata_contig2725:2130..2250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 2131..2250 +
1691481026.1836238-CDS-H-paniculata_contig2725:2130..22501691481026.1836238-CDS-H-paniculata_contig2725:2130..2250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 2131..2250 +
1622929820.9594214-CDS-H-paniculata_contig2725:2403..25471622929820.9594214-CDS-H-paniculata_contig2725:2403..2547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 2404..2547 +
1691481026.1942725-CDS-H-paniculata_contig2725:2403..25471691481026.1942725-CDS-H-paniculata_contig2725:2403..2547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 2404..2547 +
1622929820.9773905-CDS-H-paniculata_contig2725:2664..28291622929820.9773905-CDS-H-paniculata_contig2725:2664..2829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 2665..2829 +
1691481026.2039714-CDS-H-paniculata_contig2725:2664..28291691481026.2039714-CDS-H-paniculata_contig2725:2664..2829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 2665..2829 +
1622929820.9985409-CDS-H-paniculata_contig2725:3160..34061622929820.9985409-CDS-H-paniculata_contig2725:3160..3406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 3161..3406 +
1691481026.2160695-CDS-H-paniculata_contig2725:3160..34061691481026.2160695-CDS-H-paniculata_contig2725:3160..3406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2725 3161..3406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2725.7452.1

>prot_H-paniculata_contig2725.7452.1 ID=prot_H-paniculata_contig2725.7452.1|Name=mRNA_H-paniculata_contig2725.7452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=225bp
VGDTAGAIEHYEIAGTHCAEVPRMLFERDRVEDLEEYITQGNNTELLKWW
SQYMESRGEFEKARQHYTRAQDFLSVVRLACQSGDVEGAVDIVNDSGSAP
AAYHLARHLEALGRTAEAVAFYTRSSRFNHAIRLAKDHGMDSELMGFALQ
SRPALMVSVAEHLERKGEMEKAVQLYQKAGDVARALDVCFRAAMGDERGE
GRRPGMFDTLKAMTDDLGTNASPQV
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mRNA from alignment at H-paniculata_contig2725:2131..3406+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2725.7452.1 ID=mRNA_H-paniculata_contig2725.7452.1|Name=mRNA_H-paniculata_contig2725.7452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1276bp|location=Sequence derived from alignment at H-paniculata_contig2725:2131..3406+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGGCGACACAGCGGGAGCAATCGAGCACTATGAGATCGCTGGAACGCA CTGCGCGGAGGTCCCGCGCATGCTCTTCGAGCGAGACAGGGTGGAAGACT TGGAAGAATACATCACCCAGGTATCTAGCTGGAGAAAACTGAAATAGTAT GCGTATCTCGAACTAGGATATAATTTTTTTGCCTTCCCAGACAATCACTT CATGGCCCCCTACCAGCGTTACTCTCTGTGTGCTGGTTATTCCTAACGGC AATGTTTCGATCGTACCTGATAGGGTAACAATACGGAGCTGCTCAAGTGG TGGTCTCAGTACATGGAATCGAGAGGAGAGTTCGAGAAGGCCCGCCAGCA TTACACCAGAGCGCAGGACTTCTTGTCTGTCGTCAGACTCGCTTGCCAAA GTGGCGATGTTGAAGGGGTGAGCCCTCTCAGTTTAGACATTTCCACATGA CCAAAATTTTCTTTGTGTCGCATGAAATCTGAAGTAACTGCTGGTGTTGA CTCTGTCTATCGAACCACGCATGTCATTTCTCAGGCAGTCGACATAGTCA ACGATTCGGGCTCAGCTCCCGCTGCTTACCACCTTGCGAGGCATTTGGAG GCACTGGGAAGGACAGCGGAGGCAGTGGCTTTCTACACCCGTAGCAGTCG TTTCAACCACGCCATACGATTAGCCAAAGACCACGGCATGGATTCGGAGG TGATTAACGTCCAACATTCAACATATAAATCAGCGTGGTCTTCCAGCTAG CCTTTTTTCATCAACGTGGCATCGCCTGTTAATAACGTGAAATGCGATAA AATGATGTAGAGCTCCAGCAGAATACGACGACAATCGCTGTAATTAGGCG TTCCGAAACACTAACATTTTGATATACGAGTAGCGCTTCTTCAATGACCA GAAAATAGTATTCTCCTGAAACTAACTAGAGCCCCCGAAAGGAACGAGCC GATGCGAAACAACCGGTCATGAATTCAAAATCGAAAAGTCTTGAGTTCAG TCTATGCCCCTCGTTTCCGCCTCCCTGCAGTTGATGGGGTTCGCCCTGCA GAGTAGGCCGGCTTTGATGGTATCCGTCGCTGAACATTTGGAGAGGAAGG GGGAAATGGAAAAAGCCGTGCAGCTGTACCAGAAAGCGGGCGATGTAGCT CGAGCGTTAGACGTCTGTTTCAGGGCTGCGATGGGAGACGAACGAGGAGA AGGACGACGGCCGGGGATGTTTGACACGCTCAAAGCCATGACGGACGATC TAGGAACTAACGCGTCTCCGCAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig2725:2131..3406+

>mRNA_H-paniculata_contig2725.7452.1 ID=mRNA_H-paniculata_contig2725.7452.1|Name=mRNA_H-paniculata_contig2725.7452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at H-paniculata_contig2725:2131..3406+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGGCGACACAGCGGGAGCAATCGAGCACTATGAGATCGCTGGAACGCA
CTGCGCGGAGGTCCCGCGCATGCTCTTCGAGCGAGACAGGGTGGAAGACT
TGGAAGAATACATCACCCAGGTCGGCGACACAGCGGGAGCAATCGAGCAC
TATGAGATCGCTGGAACGCACTGCGCGGAGGTCCCGCGCATGCTCTTCGA
GCGAGACAGGGTGGAAGACTTGGAAGAATACATCACCCAGGGTAACAATA
CGGAGCTGCTCAAGTGGTGGTCTCAGTACATGGAATCGAGAGGAGAGTTC
GAGAAGGCCCGCCAGCATTACACCAGAGCGCAGGACTTCTTGTCTGTCGT
CAGACTCGCTTGCCAAAGTGGCGATGTTGAAGGGGGTAACAATACGGAGC
TGCTCAAGTGGTGGTCTCAGTACATGGAATCGAGAGGAGAGTTCGAGAAG
GCCCGCCAGCATTACACCAGAGCGCAGGACTTCTTGTCTGTCGTCAGACT
CGCTTGCCAAAGTGGCGATGTTGAAGGGGCAGTCGACATAGTCAACGATT
CGGGCTCAGCTCCCGCTGCTTACCACCTTGCGAGGCATTTGGAGGCACTG
GGAAGGACAGCGGAGGCAGTGGCTTTCTACACCCGTAGCAGTCGTTTCAA
CCACGCCATACGATTAGCCAAAGACCACGGCATGGATTCGGAGGCAGTCG
ACATAGTCAACGATTCGGGCTCAGCTCCCGCTGCTTACCACCTTGCGAGG
CATTTGGAGGCACTGGGAAGGACAGCGGAGGCAGTGGCTTTCTACACCCG
TAGCAGTCGTTTCAACCACGCCATACGATTAGCCAAAGACCACGGCATGG
ATTCGGAGTTGATGGGGTTCGCCCTGCAGAGTAGGCCGGCTTTGATGGTA
TCCGTCGCTGAACATTTGGAGAGGAAGGGGGAAATGGAAAAAGCCGTGCA
GCTGTACCAGAAAGCGGGCGATGTAGCTCGAGCGTTAGACGTCTGTTTCA
GGGCTGCGATGGGAGACGAACGAGGAGAAGGACGACGGCCGGGGATGTTT
GACACGCTCAAAGCCATGACGGACGATCTAGGAACTAACGCGTCTCCGCA
GGTATTGATGGGGTTCGCCCTGCAGAGTAGGCCGGCTTTGATGGTATCCG
TCGCTGAACATTTGGAGAGGAAGGGGGAAATGGAAAAAGCCGTGCAGCTG
TACCAGAAAGCGGGCGATGTAGCTCGAGCGTTAGACGTCTGTTTCAGGGC
TGCGATGGGAGACGAACGAGGAGAAGGACGACGGCCGGGGATGTTTGACA
CGCTCAAAGCCATGACGGACGATCTAGGAACTAACGCGTCTCCGCAGGTA
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