prot_H-paniculata_contig27243.7450.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig27243.7450.1
Unique Nameprot_H-paniculata_contig27243.7450.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length350
Homology
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BLAST of mRNA_H-paniculata_contig27243.7450.1 vs. uniprot
Match: D8LSN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN9_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 5.960e-43
Identity = 141/311 (45.34%), Postives = 173/311 (55.63%), Query Frame = 0 
Query:   46 PLQAFVPATPSLHRSQDPTITDSSRTPRHRFGRRYYRMENNNLGYRSTSATAITMGMIISSADGSSGSNGLGGGGVLLWLDMRTAILPAQQTLRDLYDGLRVREGAKGRTPEDSDWLFKRVPNPVAAVLFAADSVGRAAEEAKVLIE--GGLPCFMVAADDQ---VVNLSNDEAVGAMLDPMDTPGSLQSSXXXXXXXXXXXXXXXXXXXQRKGEVVLLAAVRPSSWTNGDMPGILRITVSTCADSGKTLAVTVRSIGQLHDTAMAALAAAQTTILGQPASGVGGDGGGG--VALLIEPSVEMWEAGIMYL 349
            PL A+   +PS  R+  P  T +S         R        LG+R  SAT  T  M  ++  G+         GV LWLDMRTA+LPA QTL+ LY  LR RE A GR+PED+DW   RVPNPV A+L+AA+   RAAEE   L E    LPCF +   D    VV++S+   VG  +DP+   G   + XXXXXXXXXXXXXXXXXXX   G +V L  VRPS W +GDM  +LRI  S CA +GKTL VT                   TT+LG   +G   DG     +ALLIEP  E+WEAG++YL
Sbjct:   46 PLMAYA-FSPSTRRALHPATTTTSS--------RRSSASKPRLGHRHRSATQRTTRMSEAARPGADS-------GVALWLDMRTAVLPAAQTLKTLYGELRQREEALGRSPEDTDWTLSRVPNPVGALLYAAEPEERAAEEMVALGETAAALPCFRLGGTDGTAVVVDVSSGHVVGVRVDPV---GDNAAGXXXXXXXXXXXXXXXXXXXXXXG-LVFLPGVRPSVWESGDMGTVLRIASSACAGAGKTLVVT-------------------TTVLGVGGTGAAEDGTTPPPMALLIEPMPELWEAGLLYL 317
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27243.7450.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSN9_ECTSI5.960e-4345.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..349
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.458

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27243contigH-paniculata_contig27243:649..3014 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27243.7450.1mRNA_H-paniculata_contig27243.7450.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig27243 503..3328 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig27243.7450.1 ID=prot_H-paniculata_contig27243.7450.1|Name=mRNA_H-paniculata_contig27243.7450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=350bp
MRLAMLPFGCLLATTAQTQKQRLPASSPLFPPDVFNCGNPFISRTPLQAF
VPATPSLHRSQDPTITDSSRTPRHRFGRRYYRMENNNLGYRSTSATAITM
GMIISSADGSSGSNGLGGGGVLLWLDMRTAILPAQQTLRDLYDGLRVREG
AKGRTPEDSDWLFKRVPNPVAAVLFAADSVGRAAEEAKVLIEGGLPCFMV
AADDQVVNLSNDEAVGAMLDPMDTPGSLQSSSGGSGGGVNAAVAAAAAPS
QRKGEVVLLAAVRPSSWTNGDMPGILRITVSTCADSGKTLAVTVRSIGQL
HDTAMAALAAAQTTILGQPASGVGGDGGGGVALLIEPSVEMWEAGIMYL*
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