mRNA_H-paniculata_contig11164.745.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11164.745.1
Unique NamemRNA_H-paniculata_contig11164.745.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11164.745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11164contigH-paniculata_contig11164:2096..3849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size510
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928821.6020794-CDS-H-paniculata_contig11164:2095..21991622928821.6020794-CDS-H-paniculata_contig11164:2095..2199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11164 2096..2199 +
1691480633.484114-CDS-H-paniculata_contig11164:2095..21991691480633.484114-CDS-H-paniculata_contig11164:2095..2199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11164 2096..2199 +
1622928821.620103-CDS-H-paniculata_contig11164:3444..38471622928821.620103-CDS-H-paniculata_contig11164:3444..3847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11164 3445..3847 +
1691480633.4937582-CDS-H-paniculata_contig11164:3444..38471691480633.4937582-CDS-H-paniculata_contig11164:3444..3847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11164 3445..3847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11164.745.1prot_H-paniculata_contig11164.745.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11164 2096..3847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11164.745.1

>prot_H-paniculata_contig11164.745.1 ID=prot_H-paniculata_contig11164.745.1|Name=mRNA_H-paniculata_contig11164.745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
HTRPTRRESSLFSIAMKEADRSPIGAEEPPTDCTSCRVIGATTMLAVSAY
GMSQLTQTPKSQRGSRAFLLAFSGVFATAGIARAFWPDPPAVVGATTEAT
LSEKFPTSSGLRMGETGGGGGAPALSSELRTFREQGGKSRTCIRRDSRGN
SCSSGSTPKLVAGEVVDGE
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mRNA from alignment at H-paniculata_contig11164:2096..3849+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11164.745.1 ID=mRNA_H-paniculata_contig11164.745.1|Name=mRNA_H-paniculata_contig11164.745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1754bp|location=Sequence derived from alignment at H-paniculata_contig11164:2096..3849+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACACTAGACCGACCAGGAGGGAGAGTTCGTTGTTCTCCATAGCGATGAA
AGAAGCAGACAGAAGTCCCATTGGTGCTGAGGAACCACCTACCGACTGCA
CAAGGTGAGAAACCATTCTTCGTGCCAGTAAGTTTTCTCGAAAGTAATGC
AGTTTGAATCGCCCCGCTGTATAGGCTCTTCTGGGCCCCAGATCCCACAT
GTCCCGTAGGCTAGAGGGGTCGAGCCCGATTTTCACTGTGTTCTATCTAT
GGCAGAGACGTGGCTCTTAGCGCTCGCTCTCGTGTTATCGTTTTTTCCCG
AGAAAATAGTTGGCGAAAAAGTGACGGACTTGATGGTATAACACTAAAAG
CGTTCACCCGGATATTCTGACAGGAAGATAGCAGCACTTGCTTTGGTGTG
CCGTGCGTACCTATACCTACCTATGGTGTGTGGTTCACCTTGCCCTAGGA
CAGAGTTCGCCAGTGAGGGGTTGTTTGACGCTCAAAAATAATTATCATAC
CTGACGACAACGGTCGACTGTTGACAAGTTAACTATAGGGGGACCTGACA
CAACTAGTAATAAAAGAAACATCCACAAGCGTGACTCCAGGACCAAAGCA
GCACCGCCGTGCGAAAGGGTGCTTTTTACCTGACCCAATCACAGTACTTA
CATCTCTGTCCTCGATACCATTGTAGAAAAGTTTCGCCGCAACCCGCTAT
ATCTTTTTTGTTGGACGGCTAACTAGCTGTTTTTCTGAAAGACGTTCGCT
GGTACTATCGGTACCCCTTCACTTCAGGGCTTCAAACGTAACTATGGGGC
GTACGTATATATACGGGACGGGACGGCATCGCCGCCCCGTTCCGTCCGAT
CTATTTTGAACGATAGTGTCTGGGTACCGTCCCCTCGGCTTGGAAAAACG
GGTCCACGTCCCATCCCATCGCATCAGATTCTTCAAGGACGGGATAGATT
CCCGTCGCATTCTTCCCAAGACCTAGACGAAACGGACCGCGACCCATAGA
TTCAATAAGTAGCCGAGTCCCGTCCTGTTACCTCCTCGCTTGCACCTGTA
TTCCCGTTGTCCCGTTTCGTCAAGAAATGAAATTATTCGTCCCATTGCGT
CCTGCCCTGTGGTGATGTGCAAAGTCTGTGTAGAGTCTTGCTTGATTTGA
TGGCGGCTGCCCCCTTTTGGAATTACGTTGGTTGCGTATTTATATAATGC
TGCAGTTATTTTTTAAGCTCTATCTGTAATCTGATGAATGCCCAATACTG
CGGACGGTGAGTTATACTTGGTTGACGGTGGGTAAAGTTTCTTGATCGAT
GCCCCACACCCCGTCCCCTTCTCCGTCTATCACTATGAATGAACCCTAGT
TGCCGAGTCATCGGAGCAACGACAATGCTCGCGGTGTCAGCTTACGGCAT
GTCCCAGTTGACACAAACGCCTAAATCCCAGAGAGGGAGTCGAGCTTTTT
TGCTGGCATTTTCGGGGGTGTTTGCAACCGCTGGCATCGCCAGAGCATTT
TGGCCTGATCCTCCGGCAGTAGTTGGTGCGACTACGGAAGCAACGCTATC
GGAGAAATTTCCAACAAGTTCGGGGTTGAGGATGGGAGAAACAGGGGGCG
GCGGCGGAGCACCTGCACTATCATCGGAATTGAGAACTTTTCGCGAGCAA
GGTGGAAAAAGTCGTACATGCATTAGAAGAGACAGTAGAGGCAATAGCTG
TAGCAGTGGGTCGACGCCGAAGCTGGTGGCGGGGGAGGTAGTGGATGGGG
AGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig11164:2096..3849+

>mRNA_H-paniculata_contig11164.745.1 ID=mRNA_H-paniculata_contig11164.745.1|Name=mRNA_H-paniculata_contig11164.745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig11164:2096..3849+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACACTAGACCGACCAGGAGGGAGAGTTCGTTGTTCTCCATAGCGATGAA
AGAAGCAGACAGAAGTCCCATTGGTGCTGAGGAACCACCTACCGACTGCA
CAAGCACACTAGACCGACCAGGAGGGAGAGTTCGTTGTTCTCCATAGCGA
TGAAAGAAGCAGACAGAAGTCCCATTGGTGCTGAGGAACCACCTACCGAC
TGCACAAGTTGCCGAGTCATCGGAGCAACGACAATGCTCGCGGTGTCAGC
TTACGGCATGTCCCAGTTGACACAAACGCCTAAATCCCAGAGAGGGAGTC
GAGCTTTTTTGCTGGCATTTTCGGGGGTGTTTGCAACCGCTGGCATCGCC
AGAGCATTTTGGCCTGATCCTCCGGCAGTAGTTGGTGCGACTACGGAAGC
AACGCTATCGGAGAAATTTCCAACAAGTTCGGGGTTGAGGATGGGAGAAA
CAGGGGGCGGCGGCGGAGCACCTGCACTATCATCGGAATTGAGAACTTTT
CGCGAGCAAGGTGGAAAAAGTCGTACATGCATTAGAAGAGACAGTAGAGG
CAATAGCTGTAGCAGTGGGTCGACGCCGAAGCTGGTGGCGGGGGAGGTAG
TGGATGGGGAGTTGCCGAGTCATCGGAGCAACGACAATGCTCGCGGTGTC
AGCTTACGGCATGTCCCAGTTGACACAAACGCCTAAATCCCAGAGAGGGA
GTCGAGCTTTTTTGCTGGCATTTTCGGGGGTGTTTGCAACCGCTGGCATC
GCCAGAGCATTTTGGCCTGATCCTCCGGCAGTAGTTGGTGCGACTACGGA
AGCAACGCTATCGGAGAAATTTCCAACAAGTTCGGGGTTGAGGATGGGAG
AAACAGGGGGCGGCGGCGGAGCACCTGCACTATCATCGGAATTGAGAACT
TTTCGCGAGCAAGGTGGAAAAAGTCGTACATGCATTAGAAGAGACAGTAG
AGGCAATAGCTGTAGCAGTGGGTCGACGCCGAAGCTGGTGGCGGGGGAGG
TAGTGGATGGGGAG
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