mRNA_H-paniculata_contig2721.7444.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2721.7444.1
Unique NamemRNA_H-paniculata_contig2721.7444.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2721.7444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2721contigH-paniculata_contig2721:8590..11917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size682
Cds size561
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2721.7444.1prot_H-paniculata_contig2721.7444.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2721 8590..11796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929819.7281952-CDS-H-paniculata_contig2721:8589..88841622929819.7281952-CDS-H-paniculata_contig2721:8589..8884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2721 8590..8884 -
1691481025.7399285-CDS-H-paniculata_contig2721:8589..88841691481025.7399285-CDS-H-paniculata_contig2721:8589..8884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2721 8590..8884 -
1622929819.7418642-CDS-H-paniculata_contig2721:9254..95101622929819.7418642-CDS-H-paniculata_contig2721:9254..9510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2721 9255..9510 -
1691481025.7502925-CDS-H-paniculata_contig2721:9254..95101691481025.7502925-CDS-H-paniculata_contig2721:9254..9510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2721 9255..9510 -
1622929819.7546813-CDS-H-paniculata_contig2721:11786..117961622929819.7546813-CDS-H-paniculata_contig2721:11786..11796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2721 11787..11796 -
1691481025.7578166-CDS-H-paniculata_contig2721:11786..117961691481025.7578166-CDS-H-paniculata_contig2721:11786..11796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2721 11787..11796 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929819.774046-UTR-H-paniculata_contig2721:11796..119171622929819.774046-UTR-H-paniculata_contig2721:11796..11917Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2721 11797..11917 -
1691481025.7651253-UTR-H-paniculata_contig2721:11796..119171691481025.7651253-UTR-H-paniculata_contig2721:11796..11917Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2721 11797..11917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2721.7444.1

>prot_H-paniculata_contig2721.7444.1 ID=prot_H-paniculata_contig2721.7444.1|Name=mRNA_H-paniculata_contig2721.7444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
MAEKWRWGKRPGYQGAVLSCQAFNACGAYEAKARAVSGIVVASRLEAVAA
AVVAATAMRITPLQCWTMAWCLGRALEWKCRGSKKMRAFMHTFTSPPSVG
RSSSQRTPPSVDRSSSQHTPAAVAVAAAAPAPGDGPTPLRPTEDDHSPHA
MESRPSIRHRPLGIPSPSPSTPPRVGVQSHRDDDDSL
back to top

mRNA from alignment at H-paniculata_contig2721:8590..11917-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2721.7444.1 ID=mRNA_H-paniculata_contig2721.7444.1|Name=mRNA_H-paniculata_contig2721.7444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3328bp|location=Sequence derived from alignment at H-paniculata_contig2721:8590..11917- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGAGACTCAGAATGAGGCCTCCGTGCTGCTAGGCAGACCCAGGGAGAG
CGAGAGAGAGAGGGTACGGCGATGTCCCCGCGCGAAGAGCCTCTCGGCTG
CCATGAAGGAGATGGAGAGGGATGGCCGAAAGTGAGACCCTTGAAGCAAT
AAAAAAGGACAACAATAGTTCTTCGGTGATTCCCCCCCCGGCCGCCCGGC
TAATCTATTAATCCCGTTGACCCTAAGTTTCATGGTCATGATCCATTCAT
GTCTTTTGTCAACCATGGATATACTTTTTTGTAGATTTTTTACATCATAG
ATCCAAGATAGATGTCTACAGTGAGTAAGTACAATTATTAATAGAGCAAT
ATGGAGCGATTTCTCCCTCCCTGCACTTTCTTTTTTTCAAGATCCATCAT
TAGGGTGTGTGATGTGACCCTTATATATGATATCACGTCACAAGTGTCTA
CAGCACAGTGGGTAAATTGTGTATTCAAGCTGCGAGTTTTGTTGTTCTCA
GCAGCTTGCAAAATTCGCTTGTTGTGTGTCTCATCACAGCTTTTGGATGA
CCGTCAGACATCTGTCCGTAGGTGGGATGAGGGTTGATGTAATGGTGGAT
ATTGATGAGATGCACCAGCCATTGGTAGTTTCTTGATGTGCTAACCCTTC
AGGAACCGGACTCGTAACAGCCAAAAGTGTATTTGCTAACGAGCAATCGT
GGATAATGACGAATCTGTCGACATAATGTTTTTGAAGCAACTCCATACAG
CAGGTGAGGGCATCTCAAGCTTACAAGGGGGACACATTTTCTATCGTTTG
GGGGGCTTTGTCTTGGACTTTGTGCAGAGCGAGAACGGGCAAATACCGGG
GGGGAGGGGTTGTAATAAGGGCTCAATAGTTAAAAAGCCCTCTACACGAA
CTGACTAGGATGTCAGACGTCAGACATTCCCAAAATTTTCGAGGGCTGTG
ATTGATTGTGCTTGGTTTAGTATGTACCGCTGTTGAAAATATTTTCGTGG
GCTGCTCACAACTTGACTATCTTCTTTCTGGAATTTCCTTTTGGGGCATG
TCTTCTGGATCCCCAAGAACCAAAGGAAAAAGCTCAACTCCTTCACACTT
TTATTAATCGTTAGTCGAATTTCTTCTTCGTGAAACACAGCATCGACTCT
TTGTGCTGTTGCATCGACTCTTTGTGCTGTTGCATCGACATCCAGACGCT
CTCTGTCCGACTTCTCTATCTCCTAAATATCCTTGATCACTCTCAATAAC
AGATTCAGGGTAATGCAGGGCTTACCTGCGTTCGGTTGTGGTTCATTCCG
GGCGAAAGGGAATACACACACGCTAAAATCTTCTCTGTATGCCCCTGAGA
CTTCGTCCGAATTGAGGCTCACTCCACCACATATGGTTCCTATTAGTCTG
TCCCCAGTACACGAGGTACCCTACCCAATTGGATTTAGGTCCAAACTTGT
TCGCTTTTGCAATACAGTACGGGCCCGCTGACAAGAAATCACCCAATAGA
AATTTGAGGCGCAGTTTTCGCTAAGCCATAAGAAATCCGGTTCGACAATT
TAGTCTCAATTTGTGGCCTTGTACTGATTACGATGCAAAAGGGAGAAACC
CTACTGCTTGTGATCCTCGCCAAAATATGGATTTGAGCCTCACCCGAAAT
AAGAGTTTCTTATCATCGGGCTCGTACTGTATGGTGTTATGTGCTGGAAA
ATAGCAATATAGGCGATTATGTAGAACATCATATTGGTGAAAAGGGAACC
CAACTTTAAGATGGGGACCCTGGGTTATATTGGAAATAGGCTGTTTCCTG
AAAATCAATTTCGGATGTTCAGGATACAGCCTGTTTCCAATATAACCCAG
GGTCCCCATCTCAAAATTGGGTCCCCATTTCACCAATATGCTGTTGTAGG
CTGATTCGTCCCTTCTGAAAAGAGCAATAGTTGAGTCGTTGGTATATTTT
AGTGGTAACGTTCAATGGAAAATAACTGTGGTCTATTTTTGCAGGTGACG
GTCGGGCTTTTGGGGAAAACGATTTCCTCCCGAACCCGAAGGAGTTGACA
AGACAAACGTTTACAATGCAAATGTATTGGTGCCAAAAAGTCATCAGTTA
CACTTTCATGTTTTATCTCGCCGCAATTCGTCAAATGGTCGAGTAAGTTG
TGAGGTCAAAGTGTGAAGTTTGGATCAACCAAATACTGATTGTTGTTGTG
TTTTCTTTTTTGAAAGCATCCATCCCTCAGTGTTTTTAAGTCCCCTCTGT
TGGATTTTTGTTTTTGGTCGGAATGTTGGCGATGTACTCGTGCGTCTTCC
GAAAAATTGCAAACTGCGATTTATATTGTAAATAATCCTCCATATTTTTG
TACTGTAATGGATGTGATCATTTCTGTATTGTTGTTGTTGTTGTTTTCCC
TCGCCAGAGTGGCGATGGGGAAAGAGGCCAGGTTACCAGGGTGCGGTCCT
ATCGTGCCAAGCTTTCAACGCGTGTGGAGCTTACGAAGCGAAAGCTCGAG
CAGTATCGGGGATAGTTGTAGCATCGAGATTGGAAGCAGTAGCAGCTGCA
GTAGTAGCAGCGACAGCGATGAGGATCACCCCTTTGCAGTGTTGGACTAT
GGCGTGGTGCCTGGGGAGAGCCCTGGAATGGAAGTGCAGGGGATCGAAGA
AGATGAGAGCCTTGCAAGGTATATAGTGCGTGAACAGATGCGACCCCGCC
CGTTTAGAAGAAACGGTATGTTTGCCCAAGCGATGAGGAGGATCTTAATT
TGGGTTGTGTTGAACAATAACTGTTTCTTACTGCTTTTTATGGGAATTGC
TATGGGTGCCACAATTGAGCCCCATTTCTCAAGCCTCAGGTTCTTATAAT
TCCTCATGTTTAATAGCGAGCCGCATCTGTATGCAAAGAAGAAACATCGG
CACCATTTGAGAATTTACGCCCTGAAAAAAATGAAGCATGCCAATTTGTT
AGCCTTTGAGTATTTTGTGTCCACTCTCTGTCTCTATCCGGCATGTATTA
CTACAATACACTATTTTTCATTTTCTTTTTCAGCATGCATACATTCACGT
CCCCTCCCTCCGTGGGCAGATCGTCTTCACAGCGCACGCCTCCTTCCGTG
GATAGGTCGTCTTCACAGCACACGCCAGCCGCCGTCGCCGTCGCCGCCGC
TGCACCCGCGCCCGGCGATGGTCCTACCCCCCTCCGCCCCACCGAAGATG
ACCACAGCCCCCATGCAATGGAGTCGAGGCCCTCGATACGCCACCGCCCC
TTGGGGATACCGTCACCATCGCCATCTACACCACCACGAGTTGGGGTGCA
ATCGCACCGAGACGACGATGACTCGCTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2721:8590..11917-

>mRNA_H-paniculata_contig2721.7444.1 ID=mRNA_H-paniculata_contig2721.7444.1|Name=mRNA_H-paniculata_contig2721.7444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at H-paniculata_contig2721:8590..11917- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGAAAATGGCCGAAAAGTGGCGATGGGGAAAGAGGCCAGGTTACC
AGGGTGCGGTCCTATCGTGCCAAGCTTTCAACGCGTGTGGAGCTTACGAA
GCGAAAGCTCGAGCAGTATCGGGGATAGTTGTAGCATCGAGATTGGAAGC
AGTAGCAGCTGCAGTAGTAGCAGCGACAGCGATGAGGATCACCCCTTTGC
AGTGTTGGACTATGGCGTGGTGCCTGGGGAGAGCCCTGGAATGGAAGTGC
AGGGGATCGAAGAAGATGAGAGCCTTAGTGGCGATGGGGAAAGAGGCCAG
GTTACCAGGGTGCGGTCCTATCGTGCCAAGCTTTCAACGCGTGTGGAGCT
TACGAAGCGAAAGCTCGAGCAGTATCGGGGATAGTTGTAGCATCGAGATT
GGAAGCAGTAGCAGCTGCAGTAGTAGCAGCGACAGCGATGAGGATCACCC
CTTTGCAGTGTTGGACTATGGCGTGGTGCCTGGGGAGAGCCCTGGAATGG
AAGTGCAGGGGATCGAAGAAGATGAGAGCCTTCATGCATACATTCACGTC
CCCTCCCTCCGTGGGCAGATCGTCTTCACAGCGCACGCCTCCTTCCGTGG
ATAGGTCGTCTTCACAGCACACGCCAGCCGCCGTCGCCGTCGCCGCCGCT
GCACCCGCGCCCGGCGATGGTCCTACCCCCCTCCGCCCCACCGAAGATGA
CCACAGCCCCCATGCAATGGAGTCGAGGCCCTCGATACGCCACCGCCCCT
TGGGGATACCGTCACCATCGCCATCTACACCACCACGAGTTGGGGTGCAA
TCGCACCGAGACGACGATGACTCGCTCCATGCATACATTCACGTCCCCTC
CCTCCGTGGGCAGATCGTCTTCACAGCGCACGCCTCCTTCCGTGGATAGG
TCGTCTTCACAGCACACGCCAGCCGCCGTCGCCGTCGCCGCCGCTGCACC
CGCGCCCGGCGATGGTCCTACCCCCCTCCGCCCCACCGAAGATGACCACA
GCCCCCATGCAATGGAGTCGAGGCCCTCGATACGCCACCGCCCCTTGGGG
ATACCGTCACCATCGCCATCTACACCACCACGAGTTGGGGTGCAATCGCA
CCGAGACGACGATGACTCGCTC
back to top