mRNA_H-paniculata_contig2721.7443.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2721.7443.1
Unique NamemRNA_H-paniculata_contig2721.7443.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2721.7443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2721contigH-paniculata_contig2721:4572..8559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRing finger domain protein
Ec32 orthologEc-28_000810.1
Exons2
Model size1237
Cds size972
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2721.7443.1prot_H-paniculata_contig2721.7443.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2721 4774..8496 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929819.6227784-UTR-H-paniculata_contig2721:4571..47731622929819.6227784-UTR-H-paniculata_contig2721:4571..4773Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2721 4572..4773 -
1691481025.7032983-UTR-H-paniculata_contig2721:4571..47731691481025.7032983-UTR-H-paniculata_contig2721:4571..4773Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2721 4572..4773 -
1622929819.6809518-UTR-H-paniculata_contig2721:8496..85591622929819.6809518-UTR-H-paniculata_contig2721:8496..8559Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2721 8497..8559 -
1691481025.7317958-UTR-H-paniculata_contig2721:8496..85591691481025.7317958-UTR-H-paniculata_contig2721:8496..8559Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2721 8497..8559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929819.6423492-CDS-H-paniculata_contig2721:4773..51771622929819.6423492-CDS-H-paniculata_contig2721:4773..5177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2721 4774..5177 -
1691481025.7143865-CDS-H-paniculata_contig2721:4773..51771691481025.7143865-CDS-H-paniculata_contig2721:4773..5177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2721 4774..5177 -
1622929819.663124-CDS-H-paniculata_contig2721:7928..84961622929819.663124-CDS-H-paniculata_contig2721:7928..8496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2721 7929..8496 -
1691481025.7241201-CDS-H-paniculata_contig2721:7928..84961691481025.7241201-CDS-H-paniculata_contig2721:7928..8496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2721 7929..8496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2721.7443.1

>prot_H-paniculata_contig2721.7443.1 ID=prot_H-paniculata_contig2721.7443.1|Name=mRNA_H-paniculata_contig2721.7443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=324bp
MPQHLRGHPANFGGTTPSSMLSSGSGLRHSPSPYAKRFILVTHPRYCAGG
CRAKVHLHSQRGAQVDDSTTHWLDGNSSNNNGSISSSSCGSSSNQTFIAR
TSMHCGSEMTGLRDDSKDKRYTVMALKEETEVSERRFDAGWNAWQREEEW
FDNLEEKRLASYKSDVMTCSTQVSEIEPHFSGGSGFSGCADPDHRRGSSS
SSSSSILLYHNSTGSYRTPPHARSILPSFGIQETSVGVPTSPCTPTPTPR
LPGLQCSTADVATSPRNSAHSACTWASPSPGRRSCHRRTTSPANWRAARI
AGLRARSASAPIIWDEQGQRTEK*
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mRNA from alignment at H-paniculata_contig2721:4572..8559-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2721.7443.1 ID=mRNA_H-paniculata_contig2721.7443.1|Name=mRNA_H-paniculata_contig2721.7443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3988bp|location=Sequence derived from alignment at H-paniculata_contig2721:4572..8559- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTTCTCGCGGCCCTTGCGCGGGCCGCGCGGGCCTAGCCCGGTCATCGT
CGCCCCACTTTCCATGCCCCAGCACCTGCGAGGGCATCCTGCGAACTTTG
GCGGTACCACCCCGTCGTCCATGCTGAGCAGCGGTAGCGGCTTGCGGCAC
TCGCCGTCTCCGTATGCCAAGCGGTTCATTCTCGTCACGCATCCGCGCTA
TTGCGCGGGGGGTTGCCGTGCGAAAGTTCATTTGCACAGTCAGCGGGGGG
CACAGGTGGATGACTCAACTACCCACTGGCTGGATGGGAACAGCAGCAAC
AACAACGGCAGTATCAGTAGCAGCAGTTGCGGTAGCAGCAGCAACCAGAC
GTTTATAGCACGGACAAGCATGCATTGTGGAAGTGAGATGACGGGTTTGA
GAGATGACTCCAAAGATAAAAGGTACACTGTCATGGCGCTCAAGGAGGAG
ACGGAGGTATCGGAGCGGAGGTTCGATGCCGGCTGGAACGCATGGCAGCG
CGAGGAGGAATGGTTTGACAATTTGGAGGAGAAGAGGCTGGCGTCCTACA
AGAGCGACGTGATGACTTGCTCCACCCAAGTGTCTGAGATCGAGCCACAT
TTTTCAGGCGGCTCGGGGTTCTCGGGCTGCGGTAAGTAATGGCTGTCGTT
GCTGGACGATTATCTTCTTTTATGCCTGCTCCCCAAAGTGTGGTGATAAG
CACATCATTCTTGATAACGTTGCTTCCCATCGGCATTTCACCGTTGCTTA
TTCGGTGGCACAATATCACACTGTTGTACCGTCTATTAACTCCCAATGCC
TCGCCTACTACCTAACGCCCCCATACATTTTGAATTGATTTTTACCTGCG
GAGGCACTAAGTCGCACATGCGTACGAGCTGGGCCAGCCAAGAAACTAAT
CTGACGGGTTTGAGGCTGTACCCCCATCAATTTAATGAATTTTGCAGTGA
AACGTTGACATCGTGTTCTTCACTAACTTGCCCGCACATTCAGCGTCAGT
CATTTCTTTTTTCTTTTCTTATCGAAAATTGCGGCCTATTCAAAGATGCG
AGAAAATGCAGAGCCGGCCGTAACTGCCTTGAAAAAATATATGAACGACG
TTGAATAAATATTTCACAAACGACCCGCATATGGAGTTAAAATTATAGGT
CAAAATTCGCAAAACTGAGCGGGGTATCGCAGATTGTTGTGGGACCCCTG
TGGGACATACCCACTGGGGGTAAATATTTGGCTATTCTTCCCCCACAAGG
AAGCAGGCTACCGCAGTACAAGTACGTGCAAATGAGCGAATGAAGATGTA
ACGTGTACAGCATGGTACCTACCAAATGACAAATAACATCAGGTCTCCAG
TGCCACCACTATTAGTTGACCATCCGAAACGAACCACGACTCTACTCGTA
CATCGTACTCATCCTGTGGCATATTGTCGAACACCACACTCGGTATCCCT
GCCCATGCATTTCTATCCATTGTCCGCCCCTCCCTATCATTGGTGCTCAC
GATACGAGTCGTGCGACTACTGGTATTGGTTATTCTCCTACTCGTATTGC
TTGTCGATTAAGCCAGGCTCCATGTTAAGGATGTTGTGGTGAGCCTTGCA
CTCCTTCTTCATCTTCTCGATCATACGCACTTCTGGCTTTTGAGCCACCC
TAGCATGTCGAGCTCAAGATCTTCCTCGGACAGGATCCACTCCCTCTCGT
GTACACCTCGGTCGTCGCCCTTCAAACGTCTGCCGAGTGTCCGAAACTCA
CGTACCCACGAGAGAATTGTACTCGGCTCGTAATTCACCTCCGCGGCTTC
CGCGACTTCCGCCGCCATCGCCAGCATCGTGAACCTTAGACGAATGAGCG
AAGCTTCGTTCATGTGGTTCCATACCTTTTCGTCTACCTTTTTCCAGGTG
GATTGCGTCGCGGTGACCGCCAAGGCATCGATGGTTTGCTTCGCAGCTCC
GAGCTCGCCGAAAGAGAGTAAATCCCGATCGCATTCACGCTCCAATATCT
GATTAATGGCGAATGCCTGAATCCCCGACCGTTCCCTCTGGTCCGCGCTG
ATCTGCGGCGGCGGCAGCGTCGGCCTCCGCTTCCTCGACATTACCGTCGT
CGTCAGCTTGTAGCAGCTTGGTGACGTCTCCCATTATTGCCTTTCGAAGC
CGGAAGATGAGGTTCGCGTTCCCCTGCGCTCGCTTGTTCAGTTCGGCGAC
ACGCAACACGAGTTAGGACTTCCGTGCCGCGAACTTCTTGACCACTTTCT
CCTGGCGCCTCGTCCACGAGCATCGACGCCATCCAATCCGCACGTGTCAA
ATTAGCCCTTTTCCCTCCGGCGTTTCTTGAACGTCCTCTCCTGTGAGGCG
CTCAGTCGATGCAAGCTGTGGTGAGACTTCCCTGTTGGATAAAGGAAGCA
AAAGGGAAGACGGCGCGTACAGCAGTCAAGACATACACAAACAACAGTAC
AAACAGTACAAATGAAAACGAGACAGCCTCAAAAACAGCAAGATGACAGC
AGTAGAACCTGATGGAGCTCGCCGTCGGGTAACCTGGCAGCTGCCGAACC
TGCAGTTGACGAGGAGGTCGAGCTGCGATGTTGATCTGAAGGAGGGGAAA
GGTCAACCTGCGTACCCTTGTACCCCTGCTTCCAACTCATCCGCCACCAC
TCTTTGGTTGCCTCTGCCTCCTCCTGGGTGTCGAAAAGCTTCGATTACTT
CACTTGTGTCGCCTTCTTTGTACTCTGCGTATAGTTCAATTTCAACCTCC
ACTTCCCTCTGCCGATCGAAATTCATCCTCGGGGCAGAGGTCTTCCGCCA
ACGCACGGTACCATGCGAGCTTGGAGCCATGTCGCAACTTGTGCGTTGTA
TAAGGCTCCCAACAGCTGCAGTGCTGCAGCTCAAAATTTGAAAATATTTT
ATCCCGCCGCAAAAAATTGAGGAAGTGACGGTTATTGAGGAAGTGACGGT
TTTAGCCGCCATTTTGATGTAGACACAAATCTATACATTCATGGATGGTC
GAAGGACAGGATAGTTTTGTTTGTAAATGCCTACCAACATCGCACCACCT
GGCCTGCTCATAGACGATGATTTGCCGATTACAGGAGTACTTTTCATATT
TTCAAATTCATTGTGGTTAGAAAGTTACGACCGATTGAAACTAAGTGAGT
TTCTTGGCTGGCCCAGCTTTTACGTACTAGAATATATAGCCATGAGAGTT
GGAAAAAATAAGCCATCCCCACCACCCATGGATATTCATGGGCGCCCTTA
ACACCAACCATAACCGCTTCGCGCTTTATTATTAGGTTTCATGGACTCAC
CACTAGTCAATCATTTGTTTTGTTTTGTTTTGTAACCGCTCGTCTTGCGT
ACGTACGTACGACCGTCCTCGGCACACCACAGCAGACCCTGACCACCGAC
GAGGCAGCAGCAGCAGCAGCAGCAGCAGTATCCTCTTGTACCACAATAGC
ACAGGGAGCTACAGAACGCCCCCTCACGCCCGCAGCATCTTGCCGTCCTT
TGGGATTCAAGAAACATCTGTGGGTGTGCCGACCTCGCCCTGTACGCCTA
CGCCCACCCCTCGCCTCCCGGGTCTGCAATGCAGCACGGCGGATGTGGCC
ACCTCTCCTCGCAACTCTGCGCACAGTGCGTGCACATGGGCTAGCCCGAG
CCCGGGTCGGAGATCCTGCCATAGGCGAACCACGAGCCCGGCGAACTGGA
GAGCGGCTCGGATCGCAGGATTACGGGCCCGGTCTGCCTCGGCGCCCATC
ATTTGGGATGAGCAAGGCCAGAGAACAGAGAAGTGAGGATATATTTCAGG
CGTGAAGAGGCGGTTTGTGTTTAATTCATCTTCCCGAGCAGCAGCAGGAG
GAGGAGGAAGAGTTTTTTTTATTTGGCTCTTAGCTAATTAGAGAATAAGA
CTTGCGTACACTTGGCGTGCATAACGAACGTTCTATTCAAAAGTATTTTT
ATAGCTTCTTTTTGCGCTTGACTTTATGGGGAGGGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2721:4572..8559-

>mRNA_H-paniculata_contig2721.7443.1 ID=mRNA_H-paniculata_contig2721.7443.1|Name=mRNA_H-paniculata_contig2721.7443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1944bp|location=Sequence derived from alignment at H-paniculata_contig2721:4572..8559- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCCAGCACCTGCGAGGGCATCCTGCGAACTTTGGCGGTACCACCCC
GTCGTCCATGCTGAGCAGCGGTAGCGGCTTGCGGCACTCGCCGTCTCCGT
ATGCCAAGCGGTTCATTCTCGTCACGCATCCGCGCTATTGCGCGGGGGGT
TGCCGTGCGAAAGTTCATTTGCACAGTCAGCGGGGGGCACAGGTGGATGA
CTCAACTACCCACTGGCTGGATGGGAACAGCAGCAACAACAACGGCAGTA
TCAGTAGCAGCAGTTGCGGTAGCAGCAGCAACCAGACGTTTATAGCACGG
ACAAGCATGCATTGTGGAAGTGAGATGACGGGTTTGAGAGATGACTCCAA
AGATAAAAGGTACACTGTCATGGCGCTCAAGGAGGAGACGGAGGTATCGG
AGCGGAGGTTCGATGCCGGCTGGAACGCATGGCAGCGCGAGGAGGAATGG
TTTGACAATTTGGAGGAGAAGAGGCTGGCGTCCTACAAGAGCGACGTGAT
GACTTGCTCCACCCAAGTGTCTGAGATCGAGCCACATTTTTCAGGCGGCT
CGGGGTTCTCGGGCTGCGATGCCCCAGCACCTGCGAGGGCATCCTGCGAA
CTTTGGCGGTACCACCCCGTCGTCCATGCTGAGCAGCGGTAGCGGCTTGC
GGCACTCGCCGTCTCCGTATGCCAAGCGGTTCATTCTCGTCACGCATCCG
CGCTATTGCGCGGGGGGTTGCCGTGCGAAAGTTCATTTGCACAGTCAGCG
GGGGGCACAGGTGGATGACTCAACTACCCACTGGCTGGATGGGAACAGCA
GCAACAACAACGGCAGTATCAGTAGCAGCAGTTGCGGTAGCAGCAGCAAC
CAGACGTTTATAGCACGGACAAGCATGCATTGTGGAAGTGAGATGACGGG
TTTGAGAGATGACTCCAAAGATAAAAGGTACACTGTCATGGCGCTCAAGG
AGGAGACGGAGGTATCGGAGCGGAGGTTCGATGCCGGCTGGAACGCATGG
CAGCGCGAGGAGGAATGGTTTGACAATTTGGAGGAGAAGAGGCTGGCGTC
CTACAAGAGCGACGTGATGACTTGCTCCACCCAAGTGTCTGAGATCGAGC
CACATTTTTCAGGCGGCTCGGGGTTCTCGGGCTGCGCAGACCCTGACCAC
CGACGAGGCAGCAGCAGCAGCAGCAGCAGCAGTATCCTCTTGTACCACAA
TAGCACAGGGAGCTACAGAACGCCCCCTCACGCCCGCAGCATCTTGCCGT
CCTTTGGGATTCAAGAAACATCTGTGGGTGTGCCGACCTCGCCCTGTACG
CCTACGCCCACCCCTCGCCTCCCGGGTCTGCAATGCAGCACGGCGGATGT
GGCCACCTCTCCTCGCAACTCTGCGCACAGTGCGTGCACATGGGCTAGCC
CGAGCCCGGGTCGGAGATCCTGCCATAGGCGAACCACGAGCCCGGCGAAC
TGGAGAGCGGCTCGGATCGCAGGATTACGGGCCCGGTCTGCCTCGGCGCC
CATCATTTGGGATGAGCAAGGCCAGAGAACAGAGAAGTGACAGACCCTGA
CCACCGACGAGGCAGCAGCAGCAGCAGCAGCAGCAGTATCCTCTTGTACC
ACAATAGCACAGGGAGCTACAGAACGCCCCCTCACGCCCGCAGCATCTTG
CCGTCCTTTGGGATTCAAGAAACATCTGTGGGTGTGCCGACCTCGCCCTG
TACGCCTACGCCCACCCCTCGCCTCCCGGGTCTGCAATGCAGCACGGCGG
ATGTGGCCACCTCTCCTCGCAACTCTGCGCACAGTGCGTGCACATGGGCT
AGCCCGAGCCCGGGTCGGAGATCCTGCCATAGGCGAACCACGAGCCCGGC
GAACTGGAGAGCGGCTCGGATCGCAGGATTACGGGCCCGGTCTGCCTCGG
CGCCCATCATTTGGGATGAGCAAGGCCAGAGAACAGAGAAGTGA
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