mRNA_H-paniculata_contig2720.7442.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2720.7442.1 vs. uniprot
Match: A0A6H5L0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D2_9PHAE) HSP 1 Score: 503 bits (1296), Expect = 7.820e-154 Identity = 357/818 (43.64%), Postives = 481/818 (58.80%), Query Frame = 2
Query: 350 LEARLVATENECAEIDNNLVTVREKIETALRCLRKRPSVNGDEMRQEIKRLDVKLTTTSMKLVDEKTCLRRKEHLKTRLKDLASYEAATGEIQALKDKRLILTGERRDKVVQVSEVKQGLRRLRLALSLGVAARDLASATVEVPKEGIGRVLGKRRAALLQLEEECKVAAAEDYSRIDTPSASAGTAAESRESAAAATDSAANTLSPYPAEGDPHGF------------LTVHLSGTREGVNEACRRLELAVRTVETAVPASTQLAAALRANGLALAIRIQQEFRVRMFVGSGGGAGEYAVSPRTNDXXXXXRGFHDNGAAVATGYYASXXXXXXXXXXXXXVG-------AATVHLSGLPEDVSAARDYVVGLDCLCVVVPVERRALPTIIGTAGANVRQFEVDFGVTAEIPRTGDPRVVLMGVKTDVEAAAARLREVSDTFREMEERWPVEGYQVKILLRNRAAVLNAIQNSLGGGVQLSV---ARERVPMAPPTXXXXXXXXXXXAEGLVADDVRGGMVAPGDPHRPLV-------MEVSHVLVRGFGPKVSAASQLLLERLKDAERLTARVSITPEAIPSLVGKAGSAIRRLRTLCAGVEIEVK---NQPPEVFLLADHEDRLEAARLLMEAAVRQQQSRVIDVGSDTAGLLRTYRATTVRNNIL----RVRVSGVFTH-----------------------EKKIVDGIFGGTRMEISVREGLVRLRGAEEELDAAERLILEFHAEHFTIKTPVGADDECLLVRRGGLRQLQDEEPSLQLNFDRERQAVLITGRREAVERSAARLWAMVYGGG 2626
LEAR A E E E++ + V + +KIE ++ L KRP +NGD++R E++ +D+KLTTTSMKLV+EKT LRRK+ +K RLKDLA+YE A ++QALKD+R +L E+RDK Q++E++QGLRRLRLA LGVA RDLA ++EVP+E GRV+GK+RAAL QLEEEC+V + +R+ G+ A +R +P + PHG L +HLSGTREGV EA RRL++ +RT E V AS LAAALRA+ AL +R+++E V++F+ XXXXX XXXXXXXXXXXXX A V + GLP+ + AAR + GLDCL + VPV R+ALP+I G+ GAN++Q E ++GV ++ +TG RVVLMGV+ VEAAA ++R +S FR+ EERWPVE YQV LLRNR A L + + +GGGV +++ A+ + P A PT EG D+ AP P + S V VRG P+VSAA LLLERLK AE LTA+V++ + + + VG AGS IR+LR LC G ++ + + EV LLAD E RL AA L+E V QQ R++ VGS AG+LRT+RA VR+ I R + SG E D +FGG M+ V EG+VRLRG +EELD AERL+ EF A+++T + PV DE +L R+G LR++Q E + L++ R+R V++ GR+E E +AA L ++GGG
Sbjct: 3 LEARCGAMELEVDELEKSWVQMNDKIEAVIKRLPKRPGINGDQLRAEMRSIDIKLTTTSMKLVEEKTLLRRKDSIKARLKDLAAYELAQQDVQALKDQRAMLFTEKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREATGRVIGKKRAALTQLEEECRVLIVTENNRV------CGSTAAARI---------------WPDK--PHGXXXXXXXXXXXDTLILHLSGTREGVEEARRRLDVTIRTTEAVVKASPALAAALRASRRALLLRLEKEHGVKIFIVGPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGQVAVDVTVCGLPKGIDAARAELEGLDCLELAVPVTRKALPSIFGSGGANLQQMESEYGVCLDV-QTGVSRVVLMGVRAGVEAAAEKIRAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRVGGGVMMTILEGAKTKGPAAAPTLPAAALLE---GEGEDVDE------APHSPEEEVKEGRGGSQSTTSFVWVRGAAPRVSAAGVLLLERLKAAEHLTAKVAVREDIVSTFVGHAGSEIRKLRRLCVGCDLGLSPATDGVAEVLLLADDEARLAAAVGLVEKWVHHQQVRMVAVGSKIAGMLRTFRAAGVRDRITGANRRQKGSGTSXXXXXXXXXXXXXXNDGGRARGDAGEGGDPDDLFGGVIMDSLVAEGMVRLRGGDEELDRAERLVREFEADNWTTEAPVAISDEDVLFRKGFLRKMQANETDVNLHYLRDRGVVVVRGRQEHAESAAASLLWKLHGGG 787
BLAST of mRNA_H-paniculata_contig2720.7442.1 vs. uniprot
Match: D7FTS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS6_ECTSI) HSP 1 Score: 402 bits (1034), Expect = 8.620e-127 Identity = 276/619 (44.59%), Postives = 366/619 (59.13%), Query Frame = 2
Query: 350 LEARLVATENECAEIDNNLVTVREKIETALRCLRKRPSVNGDEMRQEIKRLDVKLTTTSMKLVDEKTCLRRKEHLKTRLKDLASYEAATGEIQALKDKRLILTGERRDKVVQVSEVKQGLRRLRLALSLGVAARDLASATVEVPKEGIGRVLGKRRAALLQLEEECKVAAAEDYSRIDTPSASAGTAAESRESAAAATDSAANTLSPYPAEGDPHGFLTVHLSGTREGVNEACRRLELAVRTVETAVPASTQLAAALRANGLALAIRIQQEFRVRMFVGSGGGAGEYAVSPRTNDXXXXXRGFHDNGAAVATGYYASXXXXXXXXXXXXXVG--AATVHLSGLPEDVSAARDYVVGLDCLCVVVPVERRALPTIIGTAGANVRQFEVDFGVTAEIPRTGDPRVVLMGVKTDVEAAAARLREVSDTFREMEERWPVEGYQVKILLRNRAAVLNAIQNSLGGGVQLSVARERVPMAPPTXXXXXXXXXXXAEGLVADDVR----GGMVAPGDPHRPLVMEVSHVLVRGFGPKVSAASQLLLERLKDAERLTARVSITPEAIPSLVGKAGSAIRRLRTLCAGVEIEVK---NQPPEVFLLADHEDRLEAARLLMEAAVRQQQ 2179
LEAR A E + E++ V + +KIE ++ L KRP +NGD++R E++ +D KLTTTSMKLVDEKT LRRK+++K RLKDLA+YE A ++QALKD+R +L E+RDK Q++E++QGLRRLRLA LGVA RDLA ++EVP+E GRV+GK+RAAL QLEEEC+V+ +T ++SGTREGV EA RRL++ +RT E V AS LAAALRA+ AL +R+++E V++F+ G A XXXXX XXXXXXXXXXXX G A V + GLP+++ AAR + GLDCL + VPV R++LP+I G+ GAN++Q E ++GV ++ +TG RVVLMGV+ VEAAA ++R +S FR+ EERWPVE YQV LLRNR A L + + +GGGV +++ E AP EG ++ R S V VRG P+VSAA LLLERLK AERLTA+V++ + + + VG AGS IR+LR LC G ++ + + EV LLAD E RL AA L+E V QQ
Sbjct: 3 LEARCGAMELQVDELEKGWVLMNDKIEAVIKRLPKRPGINGDQLRAEVRSIDTKLTTTSMKLVDEKTLLRRKDNIKARLKDLAAYELAQQDVQALKDQRAVLFAEKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREATGRVIGKKRAALTQLEEECRVS-----------------------------------------------IVTENVSGTREGVEEARRRLDITIRTTEAVVKASPPLAAALRASKRALLLRLEKEHGVKIFI-----VGPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGQVAVDVTVCGLPKEIDAARAELEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGVCLDV-QTGVSRVVLMGVRAGVEAAAEKIRAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRVGGGVMMTILEEANTKAPAAAPTLPAASLSEGEGEEINEARHPPXXXXXXXXXXXXXXQSTTSFVWVRGTAPRVSAAGVLLLERLKAAERLTAKVAVREDVVSTFVGHAGSEIRKLRRLCVGCDLGLSPATDGVAEVLLLADDEARLAAAVGLVEKWVHHQQ 568
BLAST of mRNA_H-paniculata_contig2720.7442.1 vs. uniprot
Match: A0A835Z3V4_9STRA (KH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3V4_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.790e-18 Identity = 72/263 (27.38%), Postives = 130/263 (49.43%), Query Frame = 2
Query: 350 LEARLVATENECAEIDNNLVTVREKIETALRCLRKRPSVNGDEMRQEIKRLDVKLTTTSMKLVDEKTCLRRKEHLKTRLKDLASYEAATGEIQALKDKRLILTGERRDKVVQVSEVKQGLRRLRLALSLGVAARDLASATVEVPKEGIGRVLGKRRAALLQLEEECKVAAAEDYSRIDTPSASAGTAAESRESAAAATDSAANTLSPYPAEGDPHGFLTVHLSGTREGVNEACRRLELAVRTVETAVPASTQLAAALRANGLA 1138
+ ++L + E + ++ ++ R +++ A + L +RP E+ EI +L+ +T SM L EK LR+++ + ++KD+ +I+AL+DK L E + +V+E+ +GL ++ LA+ GV DL +ATV VP + IGR++G+ RAAL LE++C V E S+S+G A + + +S + + AC R+ A+ TV++ + S + AAL+ + A
Sbjct: 93 VASKLAEAQGERSALEVKILETRHRVDAARKRLPRRPREAEKELEDEIAKLEFYRSTNSMSLSKEKEVLRQQDQARAKIKDIKERARQEKDIEALQDKVGALIEESKANTEKVNELSRGLAKVHLAVKAGVGVADLVTATVHVPSDKIGRIIGRSRAALADLEKDCGVVCRE------RSSSSSGXXXXXXX-----XXXXXXXXXXXXATNGGXXXIAIDVSXXQAXXDAACARVRAAIATVDSKIAISADVVAALKVSSSA 344
BLAST of mRNA_H-paniculata_contig2720.7442.1 vs. uniprot
Match: D7FTS7_ECTSI (KH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS7_ECTSI) HSP 1 Score: 87.8 bits (216), Expect = 5.790e-14 Identity = 44/99 (44.44%), Postives = 68/99 (68.69%), Query Frame = 2
Query: 2330 MEISVREGLVRLRGAEEELDAAERLILEFHAEHFTIKTPVGADDECLLVRRGGLRQLQDEEPSLQLNFDRERQAVLITGRREAVERSAARLWAMVYGGG 2626
M+ V EG+VRLRG +EELD AERL+ EF A+++T + PV DE +L+R+G LR +Q + + L+F R+R V++ GR++ E +A L + ++GGG
Sbjct: 2 MDSLVAEGMVRLRGGDEELDRAERLVREFEADNWTTEAPVAISDEDVLLRKGFLRNMQANQTDVNLHFLRDRGVVVVRGRQKHAESAATLLLSKLHGGG 100
BLAST of mRNA_H-paniculata_contig2720.7442.1 vs. uniprot
Match: A0A024GU84_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GU84_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 2.120e-7 Identity = 44/147 (29.93%), Postives = 73/147 (49.66%), Query Frame = 2
Query: 413 VREKIETALRCLRKRPSVNGDEMRQEIKRLDVKLTTTSMKLVDEKTCLRRKEHLKTRLKDLASYEAATGEIQALKDKRLILTGERRDKVVQVSEVKQGLRRLRLALSLGVAARDLASATVEVPKEGIGRVLGKRRAALLQLEEECKV 853
+ EKI L+ KRP + ++ E++ L+++ TTTSM L DEKT LR + LK + + L Y I +K R L + + ++ L+++ LA +GV D + V + + I R L K+ A L +++ C V
Sbjct: 34 IDEKIRILLKNPPKRPKITLSKIEMEMETLELRRTTTSMSLNDEKTILRELQSLKEKREQLQRYAVFQKSIDTMKQTRAELMKQHEAHTFERDRIESELKKIALAQQIGVPTCDFVTIKVTISDDIIARSLKKKMALLEEIQSTCHV 180
BLAST of mRNA_H-paniculata_contig2720.7442.1 vs. uniprot
Match: F0WYI5_9STRA (Uncharacterized protein AlNc14C384G11247 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WYI5_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 2.160e-5 Identity = 48/172 (27.91%), Postives = 86/172 (50.00%), Query Frame = 2
Query: 338 LVSQLEARLVATENECAEIDNNLVTVREKIETALRCLRKRPSVNGDEMRQEIKRLDVKLTTTSMKLVDEKTCLRRKEHLKTRLKDLASYEAATGEIQALKDKRLILTGERRDKVVQVSEVKQGLRRLRLALSLGVAARDLASATVEVPKEGIGRVLGKRRAALLQLEEECKV 853
L +L+A V +N E + EKI A + KRP + +++ +++ L+++ TTTSM L DEKT LR + LK + K L A I ALK R + + +++ ++R+ LA L V + + + V + ++ IG+ L K+ + +++ +C V
Sbjct: 13 LNQKLQAISVHRQNNALEGKK----IDEKIRIAFKNPPKRPKITLEKIDMDMETLELRRTTTSMSLNDEKTILREIQSLKEKRKQLEICTAFQETIDALKRTRAERMKQHDVYTHERDQIELQMKRIALAQRLHVPSCEFVTIEVSITEDKIGKSLSKKSLRIDEIQSKCHV 180 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2720.7442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2720.7442.1 >prot_H-paniculata_contig2720.7442.1 ID=prot_H-paniculata_contig2720.7442.1|Name=mRNA_H-paniculata_contig2720.7442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=839bp MHPPSQQRHHQQGHGNNARMGAASEVANDSTHAQELRAISSSKDKQASSKback to top mRNA from alignment at H-paniculata_contig2720:5750..19762- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2720.7442.1 ID=mRNA_H-paniculata_contig2720.7442.1|Name=mRNA_H-paniculata_contig2720.7442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14013bp|location=Sequence derived from alignment at H-paniculata_contig2720:5750..19762- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2720:5750..19762- >mRNA_H-paniculata_contig2720.7442.1 ID=mRNA_H-paniculata_contig2720.7442.1|Name=mRNA_H-paniculata_contig2720.7442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5034bp|location=Sequence derived from alignment at H-paniculata_contig2720:5750..19762- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |