mRNA_H-paniculata_contig272.7441.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig272.7441.1
Unique NamemRNA_H-paniculata_contig272.7441.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig272.7441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig272contigH-paniculata_contig272:14806..15571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size557
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929818.7063093-CDS-H-paniculata_contig272:14806..151181622929818.7063093-CDS-H-paniculata_contig272:14806..15118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig272 14807..15118 -
1691481025.265593-CDS-H-paniculata_contig272:14806..151181691481025.265593-CDS-H-paniculata_contig272:14806..15118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig272 14807..15118 -
1622929818.722896-CDS-H-paniculata_contig272:15328..155711622929818.722896-CDS-H-paniculata_contig272:15328..15571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig272 15329..15571 -
1691481025.2739148-CDS-H-paniculata_contig272:15328..155711691481025.2739148-CDS-H-paniculata_contig272:15328..15571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig272 15329..15571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig272.7441.1prot_H-paniculata_contig272.7441.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig272 14807..15571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig272.7441.1

>prot_H-paniculata_contig272.7441.1 ID=prot_H-paniculata_contig272.7441.1|Name=mRNA_H-paniculata_contig272.7441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
AWVRGVVDARRYHDVLYATCALQAWSRGVLTRERLAVADAQRRLESIAAV
RLQAWARGTAEANRYRRVLSATCALQAWSRGYATAVRLQAWARGTAETGR
YRRLLSATNTLQAWSRGVLTRERLAVAAAQRRLEYATAVRLQAWARGTAE
ARHYRRLLSATSALQAWSRGVLTRERLAVAAAQRR
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mRNA from alignment at H-paniculata_contig272:14806..15571-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig272.7441.1 ID=mRNA_H-paniculata_contig272.7441.1|Name=mRNA_H-paniculata_contig272.7441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=766bp|location=Sequence derived from alignment at H-paniculata_contig272:14806..15571- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTGGGTGAGGGGTGTGGTGGACGCCCGACGCTACCATGACGTGTTGTA
CGCGACGTGTGCTCTACAAGCATGGTCACGCGGGGTCCTGACTAGGGAGA
GACTAGCTGTAGCTGATGCCCAGCGCCGGCTTGAATCCATAGCCGCAGTC
CGTCTACAGGCATGGGCTAGGGGCACGGCGGAAGCCAACCGTTACCGTCG
CGTATTGTCCGCTACATGTGCTCTGCAAGCATGGTCGCGTGGGGTTCTCA
CTAGGGAGAGACTAGCGGTGGCCGCCGCGCAGCGTCGGCTCGAGTATGCA
ACCGCGGTCCGTCTACAAGCATGGGCTAGAGGCACAGCGGAAGCCCGTCA
TTACCGCCGCCTTTTGTCCGCTACAAGTGCTCTGCAAGCATGGTCGCGCG
GGGTTCTCACGAGGGAGCGACTAGCGGTGGCCGCCGCCCAGCGTCGGCAC
GAGTACGCGACCGCGGTCCGTTTACAGGCATGGGCTAGGGGCACAGCGGA
AACCGGCCGTTACCGCCGCCTATTGTCCGCAACAAATACTCTACAAGCAT
GGTCGCGTGGGGTTCTCACTAGGGAGAGACTAGCGGTGGCCGCCGCCCAG
CGTCGGCTCGAGTATGCAACCGCGGTCCGTCTACAGGCATGGGCTAGAGG
CACAGCGGAAGCCCGCCATTACCGCCGCCTTTTGTCCGCTACAAGTGCTC
TGCAAGCATGGTCGCGCGGGGTTCTCACGAGGGAGCGACTAGCGGTGGCC
GCCGCTCAGCGTCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig272:14806..15571-

>mRNA_H-paniculata_contig272.7441.1 ID=mRNA_H-paniculata_contig272.7441.1|Name=mRNA_H-paniculata_contig272.7441.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig272:14806..15571- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTGGGTGAGGGGTGTGGTGGACGCCCGACGCTACCATGACGTGTTGTA
CGCGACGTGTGCTCTACAAGCATGGTCACGCGGGGTCCTGACTAGGGAGA
GACTAGCTGTAGCTGATGCCCAGCGCCGGCTTGAATCCATAGCCGCAGTC
CGTCTACAGGCATGGGCTAGGGGCACGGCGGAAGCCAACCGTTACCGTCG
CGTATTGTCCGCTACATGTGCTCTGCAAGCATGGTCGCGTGGGGCTTGGG
TGAGGGGTGTGGTGGACGCCCGACGCTACCATGACGTGTTGTACGCGACG
TGTGCTCTACAAGCATGGTCACGCGGGGTCCTGACTAGGGAGAGACTAGC
TGTAGCTGATGCCCAGCGCCGGCTTGAATCCATAGCCGCAGTCCGTCTAC
AGGCATGGGCTAGGGGCACGGCGGAAGCCAACCGTTACCGTCGCGTATTG
TCCGCTACATGTGCTCTGCAAGCATGGTCGCGTGGGTACGCGACCGCGGT
CCGTTTACAGGCATGGGCTAGGGGCACAGCGGAAACCGGCCGTTACCGCC
GCCTATTGTCCGCAACAAATACTCTACAAGCATGGTCGCGTGGGGTTCTC
ACTAGGGAGAGACTAGCGGTGGCCGCCGCCCAGCGTCGGCTCGAGTATGC
AACCGCGGTCCGTCTACAGGCATGGGCTAGAGGCACAGCGGAAGCCCGCC
ATTACCGCCGCCTTTTGTCCGCTACAAGTGCTCTGCAAGCATGGTCGCGC
GGGGTTCTCACGAGGGAGCGACTAGCGGTGGCCGCCGCTCAGCGTCGGTA
CGCGACCGCGGTCCGTTTACAGGCATGGGCTAGGGGCACAGCGGAAACCG
GCCGTTACCGCCGCCTATTGTCCGCAACAAATACTCTACAAGCATGGTCG
CGTGGGGTTCTCACTAGGGAGAGACTAGCGGTGGCCGCCGCCCAGCGTCG
GCTCGAGTATGCAACCGCGGTCCGTCTACAGGCATGGGCTAGAGGCACAG
CGGAAGCCCGCCATTACCGCCGCCTTTTGTCCGCTACAAGTGCTCTGCAA
GCATGGTCGCGCGGGGTTCTCACGAGGGAGCGACTAGCGGTGGCCGCCGC
TCAGCGTCGG
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