mRNA_H-paniculata_contig27197.7438.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27197.7438.1
Unique NamemRNA_H-paniculata_contig27197.7438.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig27197.7438.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 9.950e-23
Identity = 50/126 (39.68%), Postives = 80/126 (63.49%), Query Frame = 1 
Query:    7 IEGVDYTERYTPMPATASIRMLLATAAVKDRELRYFDAEQAFLKADIDEEVYIEIPERFQHFPGEVDKLNKAIYGFVQAGRCWNDMFCD-MSAIGFEQSRAEPCIFRKVINREVEMVVVVHVDHIL 381
            I  VD+    +P P++ASI+++LA A  K   L ++D +QA+  A +DEEV++ IP  +     ++ +  +AIYG  Q+GR W     D +   GFEQ +A+PC+FRK+++  V MV+V++VD IL
Sbjct:   32 IPNVDFFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMVIVIYVDDIL 157
[Close]
BLAST of mRNA_H-paniculata_contig27197.7438.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.450e-22
Identity = 51/126 (40.48%), Postives = 80/126 (63.49%), Query Frame = 1 
Query:    7 IEGVDYTERYTPMPATASIRMLLATAAVKDRELRYFDAEQAFLKADIDEEVYIEIPERFQHFPGEVDKLNKAIYGFVQAGRCWNDMFCD-MSAIGFEQSRAEPCIFRKVINREVEMVVVVHVDHIL 381
            I  VDY    +P P++ASI+++LA A  K   L ++D +QA+  A +DEEV++++P        E+ K  +AIYG  Q+GR W     D +   GFEQ +A+PC+FRK+++  V M++V++VD IL
Sbjct:  367 IPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDIL 492
[Close]
BLAST of mRNA_H-paniculata_contig27197.7438.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.390e-21
Identity = 50/126 (39.68%), Postives = 80/126 (63.49%), Query Frame = 1 
Query:    7 IEGVDYTERYTPMPATASIRMLLATAAVKDRELRYFDAEQAFLKADIDEEVYIEIPERFQHFPGEVDKLNKAIYGFVQAGRCWNDMFCD-MSAIGFEQSRAEPCIFRKVINREVEMVVVVHVDHIL 381
            I  VDY    +P P++ASI+++LA A  K   L ++D +QA+  A +DEEV++++P        ++ K  +AIYG  Q+GR W     D +   GFEQ +A+PC+FRK+++  V M++V++VD IL
Sbjct:  113 IPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDIL 238
[Close]
BLAST of mRNA_H-paniculata_contig27197.7438.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.450e-21
Identity = 50/126 (39.68%), Postives = 81/126 (64.29%), Query Frame = 1 
Query:    7 IEGVDYTERYTPMPATASIRMLLATAAVKDRELRYFDAEQAFLKADIDEEVYIEIPERFQHFPGEVDKLNKAIYGFVQAGRCWNDMFCD-MSAIGFEQSRAEPCIFRKVINREVEMVVVVHVDHIL 381
            I  VDY    +P P++ASI+++LA A  K   L ++D +QA+  A +DEEV++++P        ++ K  +AIYG  Q+GR W     D +   GFEQ +A+PC+FRK++++ V M++V++VD IL
Sbjct: 1212 IPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDIL 1337
[Close]
BLAST of mRNA_H-paniculata_contig27197.7438.1 vs. uniprot
Match: A0A6H5K738_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K738_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.790e-21
Identity = 47/125 (37.60%), Postives = 78/125 (62.40%), Query Frame = 1 
Query:    7 IEGVDYTERYTPMPATASIRMLLATAAVKDRELRYFDAEQAFLKADIDEEVYIEIPERFQHFPGEVDKLNKAIYGFVQAGRCWNDMFCD-MSAIGFEQSRAEPCIFRKVINREVEMVVVVHVDHI 378
            I G+D+    +  P+ AS++ + A A  K ++L ++D  QA++ A + EE+Y+  PE      G+V K+ +A+YG  Q+GR W     D +   G+EQ R +PC+FRKV++REV  ++V++VD I
Sbjct:    9 IPGIDFHHSSSACPSAASMKAVTAVATEKGKKLAHWDVNQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGPKQSGREWGFEAADALVENGYEQCRVDPCVFRKVVDREVVGLIVIYVDDI 133
[Close]
BLAST of mRNA_H-paniculata_contig27197.7438.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.900e-21
Identity = 50/126 (39.68%), Postives = 80/126 (63.49%), Query Frame = 1 
Query:    7 IEGVDYTERYTPMPATASIRMLLATAAVKDRELRYFDAEQAFLKADIDEEVYIEIPERFQHFPGEVDKLNKAIYGFVQAGRCWNDMFCD-MSAIGFEQSRAEPCIFRKVINREVEMVVVVHVDHIL 381
            I  VDY    +P P++ASI+++LA A  K   L ++D +QA+  A +DEEV++++P        ++ K  +AIYG  Q+GR W     D +   GFEQ +A+PC+FRK+++  V M++V++VD IL
Sbjct:  474 IPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDIL 599
[Close]
BLAST of mRNA_H-paniculata_contig27197.7438.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.930e-21
Identity = 50/126 (39.68%), Postives = 80/126 (63.49%), Query Frame = 1 
Query:    7 IEGVDYTERYTPMPATASIRMLLATAAVKDRELRYFDAEQAFLKADIDEEVYIEIPERFQHFPGEVDKLNKAIYGFVQAGRCWNDMFCD-MSAIGFEQSRAEPCIFRKVINREVEMVVVVHVDHIL 381
            I  VDY    +P P++ASI+++LA A  K   L ++D +QA+  A +DEEV++++P        ++ K  +AIYG  Q+GR W     D +   GFEQ +A+PC+FRK+++  V M++V++VD IL
Sbjct:  613 IPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDIL 738
[Close]
BLAST of mRNA_H-paniculata_contig27197.7438.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.950e-21
Identity = 50/126 (39.68%), Postives = 80/126 (63.49%), Query Frame = 1 
Query:    7 IEGVDYTERYTPMPATASIRMLLATAAVKDRELRYFDAEQAFLKADIDEEVYIEIPERFQHFPGEVDKLNKAIYGFVQAGRCWNDMFCD-MSAIGFEQSRAEPCIFRKVINREVEMVVVVHVDHIL 381
            I  VDY    +P P++ASI+++LA A  K   L ++D +QA+  A +DEEV++++P        ++ K  +AIYG  Q+GR W     D +   GFEQ +A+PC+FRK+++  V M++V++VD IL
Sbjct:  813 IPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDIL 938
[Close]
BLAST of mRNA_H-paniculata_contig27197.7438.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.980e-21
Identity = 50/126 (39.68%), Postives = 80/126 (63.49%), Query Frame = 1 
Query:    7 IEGVDYTERYTPMPATASIRMLLATAAVKDRELRYFDAEQAFLKADIDEEVYIEIPERFQHFPGEVDKLNKAIYGFVQAGRCWNDMFCD-MSAIGFEQSRAEPCIFRKVINREVEMVVVVHVDHIL 381
            I  VDY    +P P++ASI+++LA A  K   L ++D +QA+  A +DEEV++++P        ++ K  +AIYG  Q+GR W     D +   GFEQ +A+PC+FRK+++  V M++V++VD IL
Sbjct: 1192 IPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDIL 1317
[Close]
BLAST of mRNA_H-paniculata_contig27197.7438.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.990e-21
Identity = 50/126 (39.68%), Postives = 80/126 (63.49%), Query Frame = 1 
Query:    7 IEGVDYTERYTPMPATASIRMLLATAAVKDRELRYFDAEQAFLKADIDEEVYIEIPERFQHFPGEVDKLNKAIYGFVQAGRCWNDMFCD-MSAIGFEQSRAEPCIFRKVINREVEMVVVVHVDHIL 381
            I  VDY    +P P++ASI+++LA A  K   L ++D +QA+  A +DEEV++++P        ++ K  +AIYG  Q+GR W     D +   GFEQ +A+PC+FRK+++  V M++V++VD IL
Sbjct: 1355 IPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDIL 1480
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27197.7438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIS9_9PHAE9.950e-2339.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE5.450e-2240.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFN5_9PHAE1.390e-2139.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.450e-2139.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K738_9PHAE1.790e-2137.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JU90_9PHAE1.900e-2139.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTV6_9PHAE1.930e-2139.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.950e-2139.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.980e-2139.68Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.990e-2139.68Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27197contigH-paniculata_contig27197:2618..2998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score92.4
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog6334.EFV48939
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,40FC4@6231,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelNematoda
Best eggNOG OGNA|NA|NA
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929818.4048872-CDS-H-paniculata_contig27197:2617..29981622929818.4048872-CDS-H-paniculata_contig27197:2617..2998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27197 2618..2998 +
1691481025.1253378-CDS-H-paniculata_contig27197:2617..29981691481025.1253378-CDS-H-paniculata_contig27197:2617..2998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27197 2618..2998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27197.7438.1prot_H-paniculata_contig27197.7438.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27197 2618..2998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27197.7438.1

>prot_H-paniculata_contig27197.7438.1 ID=prot_H-paniculata_contig27197.7438.1|Name=mRNA_H-paniculata_contig27197.7438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
EHIEGVDYTERYTPMPATASIRMLLATAAVKDRELRYFDAEQAFLKADID
EEVYIEIPERFQHFPGEVDKLNKAIYGFVQAGRCWNDMFCDMSAIGFEQS
RAEPCIFRKVINREVEMVVVVHVDHIL
back to top

mRNA from alignment at H-paniculata_contig27197:2618..2998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27197.7438.1 ID=mRNA_H-paniculata_contig27197.7438.1|Name=mRNA_H-paniculata_contig27197.7438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=381bp|location=Sequence derived from alignment at H-paniculata_contig27197:2618..2998+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACATATCGAAGGGGTAGACTACACCGAGAGGTACACGCCTATGCCGGC
GACCGCGTCCATCCGGATGCTCCTGGCGACCGCAGCGGTAAAGGACAGAG
AGCTGCGATATTTCGACGCAGAACAGGCTTTTCTGAAGGCAGACATTGAC
GAGGAGGTGTACATCGAGATCCCCGAAAGATTTCAACATTTCCCGGGAGA
AGTGGATAAGCTGAACAAGGCAATCTACGGGTTTGTTCAGGCGGGGCGAT
GTTGGAACGATATGTTCTGCGACATGTCAGCAATCGGGTTCGAGCAGTCA
AGGGCAGAGCCGTGCATATTCAGGAAGGTCATCAACAGAGAAGTGGAAAT
GGTGGTCGTCGTGCACGTGGATCACATTCTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig27197:2618..2998+

>mRNA_H-paniculata_contig27197.7438.1 ID=mRNA_H-paniculata_contig27197.7438.1|Name=mRNA_H-paniculata_contig27197.7438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig27197:2618..2998+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACATATCGAAGGGGTAGACTACACCGAGAGGTACACGCCTATGCCGGC
GACCGCGTCCATCCGGATGCTCCTGGCGACCGCAGCGGTAAAGGACAGAG
AGCTGCGATATTTCGACGCAGAACAGGCTTTTCTGAAGGCAGACATTGAC
GAGGAGGTGTACATCGAGATCCCCGAAAGATTTCAACATTTCCCGGGAGA
AGTGGATAAGCTGAACAAGGCAATCTACGGGTTTGTTCAGGCGGGGCGAT
GTTGGAACGATATGTTCTGCGACATGTCAGCAATCGGGTTCGAGCAGTCA
AGGGCAGAGCCGTGCATATTCAGGAAGGTCATCAACAGAGAAGTGGAAAT
GGTGGTCGTCGTGCACGTGGATCACATTCTCGAACATATCGAAGGGGTAG
ACTACACCGAGAGGTACACGCCTATGCCGGCGACCGCGTCCATCCGGATG
CTCCTGGCGACCGCAGCGGTAAAGGACAGAGAGCTGCGATATTTCGACGC
AGAACAGGCTTTTCTGAAGGCAGACATTGACGAGGAGGTGTACATCGAGA
TCCCCGAAAGATTTCAACATTTCCCGGGAGAAGTGGATAAGCTGAACAAG
GCAATCTACGGGTTTGTTCAGGCGGGGCGATGTTGGAACGATATGTTCTG
CGACATGTCAGCAATCGGGTTCGAGCAGTCAAGGGCAGAGCCGTGCATAT
TCAGGAAGGTCATCAACAGAGAAGTGGAAATGGTGGTCGTCGTGCACGTG
GATCACATTCTC
back to top