mRNA_H-paniculata_contig2718.7434.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2718.7434.1 vs. uniprot
Match: D7FJ95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ95_ECTSI) HSP 1 Score: 273 bits (698), Expect = 1.700e-80 Identity = 181/368 (49.18%), Postives = 220/368 (59.78%), Query Frame = 2
Query: 383 LRLAALPDVVLAHVLAFFPSVTDLMNAITVCRAWVIEGDRTELWKHLGKSFQVAMPSALG---RSRADDS---------GKRMLRSASNAKRTFFKAIAAELVAHRLKHDGTLSEAYTLFRMADSVAKLKSLLRSRWGVMINISTSRGSAAKAIRGASSILEQTGKEKRRGWGGRKGNKG----GKGDTDSC----GPSLRCRRGAGARASRESAPTARAAGCLWVAGTGRWKFDVNYRHTIYEGNTLLNFAVRCGRRNTVEFIIRQMGADPEAADDGGFTPLLNAAWRGDAALVQQLYDAGASLDVKGTSRGEGPYSPIEWAERKDRPRTAQVLSELLAAEAQDGNMNGA------TGNSKEVKLPR 1408
L LA +PD LA V +F +V DL++A VCR WV++G R +LW LGK F+VAMP +LG RA S GKR+LRS +NAKRTF K+ AA + + RLKHD TLSEAYTLFRM DSV +L++LLR RWG+ + S S+ K I E + G G T +C +L+ R AGA R W +G RW F+V++RH I+EGNTLLNFAVRCGRR VEFI+ QMGAD E AD GGFTPLLN AWRGDA L++ L AGA LDVKG SRG GP+SP+EWAERK+RP TA L L A E + G+ GA G SK VK P+
Sbjct: 43 LPLAFIPDGALAIVFSFV-AVNDLLSANKVCRDWVLDGTRVDLWASLGKIFEVAMPVSLGPQTSQRAAGSTGATAGGGRGKRVLRSGANAKRTFLKSYAAAVKSDRLKHDSTLSEAYTLFRMKDSVMRLRTLLRRRWGLTFHPS-SKPDQNKRIEN----YESSXXXXXXXXXXXSGELGLFFPTATATSNCLSGTAATLKARTNAGADKDRARG--------TW-SGKARWSFNVDHRHGIFEGNTLLNFAVRCGRRKCVEFILWQMGADTEIADYGGFTPLLNTAWRGDAPLLKTLLAAGARLDVKGVSRGVGPFSPLEWAERKNRPVTAAFLRSLEAREEEGGSAEGAGPGRGNNGKSK-VKAPK 394
BLAST of mRNA_H-paniculata_contig2718.7434.1 vs. uniprot
Match: A0A6H5KSU2_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSU2_9PHAE) HSP 1 Score: 135 bits (340), Expect = 4.310e-32 Identity = 102/244 (41.80%), Postives = 133/244 (54.51%), Query Frame = 2
Query: 383 LRLAALPDVVLAHVLAFFPSVTDLMNAITVCRAWVIEGDRTELWKHLGKSFQVAMPSALG---RSRADDS---------GKRMLRSASNAKRTFFKAIAAELVAHRLKHDGTLSEAYTLFRMADSVAKLKSLLRSRWGVMINISTSRGSAAKAIRGASSILEQTGKEKRRGWGGRKGNKGGKGDTDSCGPSLRCRRGAGARASRESAPTARAAGCLWVAGTGRWKFDVNYRHTIYEGNTLLNFA 1078
L LA +PD LA V +F +V DL++A VCR WV++G R LW LGK F+V MP +LG RA S GKR+LRS +NAKRTF K+ AA + + RLKHD TLSEAYTLFRM DSV +L++LLR RWG+ + S S+ K I S +G G + S +R +A + + +G RW F+V++RH I+EGNTLLNFA
Sbjct: 9 LPLAFIPDGALAIVFSFL-AVNDLLSANKVCRDWVLDGTRVNLWASLGKIFEVTMPVSLGPQTSQRAAGSNGATAGGGRGKRVLRSGANAKRTFLKSYAAAVKSDRLKHDSTLSEAYTLFRMKDSVMRLRTLLRRRWGLTFHPS-SKPDQNKRIENCES---SSGXXXXXXXXXXXXXXLGLFIPTATATSSYLSGTVATLKARTNAESDKDKARGTWSGKARWSFNVDHRHGIFEGNTLLNFA 247
BLAST of mRNA_H-paniculata_contig2718.7434.1 vs. uniprot
Match: A0A7S2CKH5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CKH5_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 4.560e-8 Identity = 39/102 (38.24%), Postives = 51/102 (50.00%), Query Frame = 2
Query: 1052 EGNTLLNFAVRCGRRNTVEFIIRQMGADPEAADDGGFTPLLNAAWRGDAALVQQLYDAGASLDVKGTSRGEGPY-----SPIEWAERKDRPRTAQVLSELLA 1342
E N LN AV R N V ++R+ GAD AD GGF+PL++AAW GDA +V L GA D G S G + EWA + A+ + +A
Sbjct: 2 ERNPALNLAVMHRRHNCVAELLRR-GADVNLADRGGFSPLMDAAWNGDATMVVTLLKYGADPDAVGHSHFSGGIKTTERTAAEWARIRGHVEVAEHIENWVA 102
BLAST of mRNA_H-paniculata_contig2718.7434.1 vs. uniprot
Match: A0A7S2KPF6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KPF6_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 9.290e-7 Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 2
Query: 1019 KFDVNY-RHTIYEGNTLLNFAVRCGRRNTVEFIIRQMGADPEAADDGGFTPLLNAAWRGDAALVQQLYDAGASLDVKGTSRGEGPYSPI--------EWAERKDRPRTAQVL 1327
+F +NY + E ++LLN AV R V++++ + GAD E +D GGFTPLLNAA+ GD A+V+ L G + GT + I EWA ++ A+++
Sbjct: 274 RFSINYVSGVVLERSSLLNLAVMNKRHKIVKWLMER-GADIETSDRGGFTPLLNAAYVGDKAMVRYLLSKGCNRHKVGTEHSTQALAHISFKGHTAEEWARKRGYGDVAELI 384
BLAST of mRNA_H-paniculata_contig2718.7434.1 vs. uniprot
Match: A0A7L0X9M2_TYRSA (ANR16 protein (Fragment) n=1 Tax=Tyrannus savana TaxID=137541 RepID=A0A7L0X9M2_TYRSA) HSP 1 Score: 57.8 bits (138), Expect = 4.300e-5 Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 2
Query: 1055 GNTLLNFAVRCGRRNTVEFIIRQMGADPEAADDGGFTPLLNAAWRGDAALVQQLYDAGASLDVKGTSRGEGPYSPIEWAERKDRPRTAQVLSELL 1339
G+TL++ A R G R+ +EF++R++G DPEAA+ PL AA G V L D+GAS+D +G ++P+ A + R QV+ L+
Sbjct: 34 GDTLVHHAARLGHRDVLEFLLRELGMDPEAANRDYKRPLHEAASMGHGRCVSFLLDSGASVDCL----KKGDWTPLMMACTR---RNLQVIRSLV 121 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2718.7434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2718.7434.1 >prot_H-paniculata_contig2718.7434.1 ID=prot_H-paniculata_contig2718.7434.1|Name=mRNA_H-paniculata_contig2718.7434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=412bp MSGVFLPCSQIAAFSSQLSSDCVGFSETASPTEPPAKVAPPGNPSDCSSLback to top mRNA from alignment at H-paniculata_contig2718:8984..17165- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2718.7434.1 ID=mRNA_H-paniculata_contig2718.7434.1|Name=mRNA_H-paniculata_contig2718.7434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8182bp|location=Sequence derived from alignment at H-paniculata_contig2718:8984..17165- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2718:8984..17165- >mRNA_H-paniculata_contig2718.7434.1 ID=mRNA_H-paniculata_contig2718.7434.1|Name=mRNA_H-paniculata_contig2718.7434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2472bp|location=Sequence derived from alignment at H-paniculata_contig2718:8984..17165- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |