mRNA_H-paniculata_contig27171.7433.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27171.7433.1
Unique NamemRNA_H-paniculata_contig27171.7433.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27171.7433.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.150e-43
Identity = 85/186 (45.70%), Postives = 116/186 (62.37%), Query Frame = 1 
Query:    4 SNWGTRLEVLGWTIDTAALTIAYRPHKLAKLKQLMYEWPPSRKQATITEVQILIGKLLHVSQVVRPGKFFVQRMSQLLGLPSTSTRSHHEDKYVTRHTQQQKRQVCLGPELHADVEFWPTVVDATI--DAGLTLSAPLYTFVRQPHRKTLVSDASGEAIGGHCLETSLWWQYDLTQDEQARLRHGV 555
            ++W TR+E+LGW IDT ALTI+    K+AK++ ++ EWP  R+ AT+TEV+ L+GKLLH+ +VVRPGKFFV+R+   LGLP            +     ++ R V LG E H D+ FW  V+      D  + L APL     Q   +TLVSDASG+ +GG CLE+  WW+ D T D +ARLR+ V
Sbjct:  689 TSWDTRMEMLGWVIDTVALTISVSQEKVAKMRAMLAEWPVERRVATVTEVRSLLGKLLHLCEVVRPGKFFVRRILNQLGLPPMKAGGDAGTGVMVGGKHRRGR-VRLGREFHEDLAFWRKVMAMATGPDGIVKLEAPLLCSFLQAPSRTLVSDASGDGMGGFCLESGQWWRIDFTDDIRARLRNRV 873
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BLAST of mRNA_H-paniculata_contig27171.7433.1 vs. uniprot
Match: UPI001CF48B46 (uncharacterized protein LOC122963529 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF48B46)

HSP 1 Score: 53.9 bits (128), Expect = 2.290e-5
Identity = 35/112 (31.25%), Postives = 56/112 (50.00%), Query Frame = 1 
Query:   22 LEVLGWTIDTAALTIAYRPHKLAKLKQLMYEWPPSRKQATITEVQILIGKLLHVSQVVRPGKFFVQRMSQLLGLPSTSTRSHHEDKYVTRHTQQQKRQVCLGPELHADVEFW 357
            +  LG  I+T  +T++  P +L +L  L+  W  ++K AT +E+Q L+GKL  VS+ VR  + F+ R   +L +  T  R+HH  K              L  E   D+ +W
Sbjct:    1 MTCLGVQINTVDMTLSVTPERLDELVVLLSHWL-TKKSATRSELQSLVGKLSFVSKCVRQSRLFLAR---ILAMLRTVKRNHHHVK--------------LSKEFFRDIHWW 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27171.7433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPK1_9PHAE1.150e-4345.70Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
UPI001CF48B462.290e-531.25uncharacterized protein LOC122963529 n=1 Tax=Acrop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27171contigH-paniculata_contig27171:2478..3032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size555
Cds size555
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929817.876239-CDS-H-paniculata_contig27171:2477..30321622929817.876239-CDS-H-paniculata_contig27171:2477..3032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27171 2478..3032 +
1691481024.8451169-CDS-H-paniculata_contig27171:2477..30321691481024.8451169-CDS-H-paniculata_contig27171:2477..3032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27171 2478..3032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27171.7433.1prot_H-paniculata_contig27171.7433.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27171 2478..3032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27171.7433.1

>prot_H-paniculata_contig27171.7433.1 ID=prot_H-paniculata_contig27171.7433.1|Name=mRNA_H-paniculata_contig27171.7433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
MSNWGTRLEVLGWTIDTAALTIAYRPHKLAKLKQLMYEWPPSRKQATITE
VQILIGKLLHVSQVVRPGKFFVQRMSQLLGLPSTSTRSHHEDKYVTRHTQ
QQKRQVCLGPELHADVEFWPTVVDATIDAGLTLSAPLYTFVRQPHRKTLV
SDASGEAIGGHCLETSLWWQYDLTQDEQARLRHGV
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mRNA from alignment at H-paniculata_contig27171:2478..3032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27171.7433.1 ID=mRNA_H-paniculata_contig27171.7433.1|Name=mRNA_H-paniculata_contig27171.7433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=555bp|location=Sequence derived from alignment at H-paniculata_contig27171:2478..3032+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAAACTGGGGTACACGCCTAGAAGTCCTGGGATGGACGATCGACAC
AGCCGCGTTAACCATTGCATATCGGCCACACAAATTAGCGAAACTCAAAC
AGCTCATGTATGAATGGCCGCCGTCACGGAAACAAGCCACAATCACCGAA
GTGCAGATATTAATCGGTAAGCTACTCCACGTATCTCAAGTGGTACGACC
GGGCAAATTTTTCGTACAGCGGATGTCGCAGCTACTAGGACTACCCTCCA
CTTCGACACGGAGCCATCATGAAGATAAGTATGTTACACGACACACACAG
CAGCAGAAACGGCAAGTTTGTCTGGGGCCCGAATTGCACGCCGATGTTGA
ATTTTGGCCAACAGTCGTCGACGCTACGATTGACGCGGGACTCACCCTGT
CTGCACCGCTATACACATTTGTCCGACAACCACACCGAAAAACGCTCGTA
TCTGATGCATCGGGGGAGGCCATAGGAGGCCACTGTCTCGAGACAAGTCT
ATGGTGGCAGTACGATTTGACCCAGGACGAACAAGCCCGACTCCGTCATG
GGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig27171:2478..3032+

>mRNA_H-paniculata_contig27171.7433.1 ID=mRNA_H-paniculata_contig27171.7433.1|Name=mRNA_H-paniculata_contig27171.7433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig27171:2478..3032+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAAACTGGGGTACACGCCTAGAAGTCCTGGGATGGACGATCGACAC
AGCCGCGTTAACCATTGCATATCGGCCACACAAATTAGCGAAACTCAAAC
AGCTCATGTATGAATGGCCGCCGTCACGGAAACAAGCCACAATCACCGAA
GTGCAGATATTAATCGGTAAGCTACTCCACGTATCTCAAGTGGTACGACC
GGGCAAATTTTTCGTACAGCGGATGTCGCAGCTACTAGGACTACCCTCCA
CTTCGACACGGAGCCATCATGAAGATAAGTATGTTACACGACACACACAG
CAGCAGAAACGGCAAGTTTGTCTGGGGCCCGAATTGCACGCCGATGTTGA
ATTTTGGCCAACAGTCGTCGACGCTACGATTGACGCGGGACTCACCCTGT
CTGCACCGCTATACACATTTGTCCGACAACCACACCGAAAAACGCTCGTA
TCTGATGCATCGGGGGAGGCCATAGGAGGCCACTGTCTCGAGACAAGTCT
ATGGTGGCAGTACGATTTGACCCAGGACGAACAAGCCCGACTCCGTCATG
GGGTCATGTCAAACTGGGGTACACGCCTAGAAGTCCTGGGATGGACGATC
GACACAGCCGCGTTAACCATTGCATATCGGCCACACAAATTAGCGAAACT
CAAACAGCTCATGTATGAATGGCCGCCGTCACGGAAACAAGCCACAATCA
CCGAAGTGCAGATATTAATCGGTAAGCTACTCCACGTATCTCAAGTGGTA
CGACCGGGCAAATTTTTCGTACAGCGGATGTCGCAGCTACTAGGACTACC
CTCCACTTCGACACGGAGCCATCATGAAGATAAGTATGTTACACGACACA
CACAGCAGCAGAAACGGCAAGTTTGTCTGGGGCCCGAATTGCACGCCGAT
GTTGAATTTTGGCCAACAGTCGTCGACGCTACGATTGACGCGGGACTCAC
CCTGTCTGCACCGCTATACACATTTGTCCGACAACCACACCGAAAAACGC
TCGTATCTGATGCATCGGGGGAGGCCATAGGAGGCCACTGTCTCGAGACA
AGTCTATGGTGGCAGTACGATTTGACCCAGGACGAACAAGCCCGACTCCG
TCATGGGGTC
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