mRNA_H-paniculata_contig11160.743.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11160.743.1
Unique NamemRNA_H-paniculata_contig11160.743.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11160.743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11160contigH-paniculata_contig11160:3432..7793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size276
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11160.743.1prot_H-paniculata_contig11160.743.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11160 3434..7793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928821.371041-CDS-H-paniculata_contig11160:3433..35521622928821.371041-CDS-H-paniculata_contig11160:3433..3552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11160 3434..3552 -
1691480633.388989-CDS-H-paniculata_contig11160:3433..35521691480633.388989-CDS-H-paniculata_contig11160:3433..3552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11160 3434..3552 -
1622928821.3812678-CDS-H-paniculata_contig11160:4742..48421622928821.3812678-CDS-H-paniculata_contig11160:4742..4842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11160 4743..4842 -
1691480633.4016259-CDS-H-paniculata_contig11160:4742..48421691480633.4016259-CDS-H-paniculata_contig11160:4742..4842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11160 4743..4842 -
1622928821.3949513-CDS-H-paniculata_contig11160:7739..77931622928821.3949513-CDS-H-paniculata_contig11160:7739..7793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11160 7740..7793 -
1691480633.4105673-CDS-H-paniculata_contig11160:7739..77931691480633.4105673-CDS-H-paniculata_contig11160:7739..7793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11160 7740..7793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11160.743.1

>prot_H-paniculata_contig11160.743.1 ID=prot_H-paniculata_contig11160.743.1|Name=mRNA_H-paniculata_contig11160.743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
AEERATKQEAYRVQLAAKMEQLKTFAKRANLEREECLERERASAREAGSR
TGEWDGHGGGRSGSTGCRCSEGGQRGTVSDGREARSPLTNK
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mRNA from alignment at H-paniculata_contig11160:3432..7793-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11160.743.1 ID=mRNA_H-paniculata_contig11160.743.1|Name=mRNA_H-paniculata_contig11160.743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4362bp|location=Sequence derived from alignment at H-paniculata_contig11160:3432..7793- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGAGGAACGAGCAACCAAGCAAGAGGCCTACCGTGTACAGCTGGCCGC
GAAGGTAGGGGCTACACGTTGGTTTGAGTCGCTCGTTACCGTAAAGGTGA
AAGAGAACGCTCCCCCCCACCTCAGGGGCGTGTTCTTTTGTCAAGCTCAA
GTTTCTCGGAAAGCAAGGCCCTGCATACATTGTTGAACGAGAAGATCTAT
CGACAGATCTATCTCGAAGAAATCCATCTTTCAATCCAACCAAGTAACCC
TCGGTGTCACTAGCTAGCACCGTAGCTTTCGAGATAATCGAGCTTGATAA
ACAGAACGCTTCTCAGGGCCTTCTTTCTGACCTTTATGGGTGTGAGGAGT
GTTTTCTCCGACCTTTACGGGTGTTAGGGCTGCGTATCGGAAGAATTGAT
CGATATATGATAGATACACATCGAGCTCTATATTGACAGATCGTATATGT
CGCGATATGCCGATAACATCGCGATGTGTTGATATCGGCCAAACATCGGA
AAAAAGACCGGTTTTATTGCGGAAAAAATTGGCTGTTCCACGCGCAGCAC
CAGACGAGCGTAGGGAGTAAGACACAGAAAAGCAGCAACCCGAAGATGTA
ACGTGAACTACTTTCCGGTAGAAACAAGCGAACAAGATCCGCGGTCACTG
CATGTACCAATGAGACGCACAACCCGTGGAAAATGACCGATCAATCGCGT
TTATAGCCGGTAACGGCAAACGCCAATATATCGTCTAAACAAACGATAGA
TGCGATATATATAGATATATATTCTCCATATATCGGAACCATACACAGCC
CCACTATTCATCATTATCGTGAGTGCCCACGGTAGCACCTCTTAGTTATC
AATAGCACTTTTGCGAAACCAAAAAAAGGTTATTCAAGCGTTTTTTCTGG
AATCTAAGCATCCTTAATCTTGATAATTTTTATACCAGGGTAAGAGTAAG
ATCAACATAGTGCTCAACGTTCTTTCTCCAATGGTTTCCATGGAAGCTGG
ATCGTATTTTACGGCTATAATTTGCAAGCTGTTGACCGCCGGTCTCCACC
TAGTCCCAAATACAAAAAAAAAACAGAGGAACATTACAATACCCATGATA
GGAGTATTTTCGGGGATAGGAAGCCGCCGCTGATTACAGTCAGTATTTCA
GTAGTGCAGTACAGACCATACATACGGTAGAGGGCTCTGAGACCGCCCCG
GCGGCGATTTTTTTCAAGTCTGAAAGAGCATGTCTCTATCTAATGACAAG
TGTTTATGTCGACCAGATACTTTCAACGAGACAATTTTCGGTGTCACTGG
CACAGTACCTTTCGAGAAAATCGGGTTTGGAAAAAATCGCCCCCGGGGGG
GTTCTCAGAGCCAGAGCAAGCACTCGACGGTAGATCCTGCAGTGCATGCT
TTTTTAAAACAACGGAAAATAGAGAGATTTTCTACTTGTTATTTGTATAG
AAATCTCGATATGTTTGCCTTACTTGAAAAAACAATTTCAGTACACACGG
CCACAAAAAATATGGGATGCAGCGTAAATTGATCAGTCAACTTCCAGGGG
AAAGAAGCATACTGTTGATCGGCCCAAGCTTTCACGTGACCCAATGGAAT
CACCTCTTTTTCAGAAGATTTCCTGCCTCAAAACAAATTAGATCTACAAT
ATAGATTGGAACGGAAGTCGAGGTTGATTCGGGTAAACGAAAATGAGCGC
GAACAATGCGTGCATGAACTACCCAAGAGACTGCGCTGAAATTGAAAGAC
AACGGAAGGTCAATCCACGCCCCAATTGCCGTGAGGACCACACTGCCCTC
GACACAACAACGTACAGATCGAGTCGAAGCCCTTGGTCAGTCGCGTACCT
TGTACTTGGTTTGGGCTGAATTCGAAAAAAAGGATGCAGCATGGGTACGA
TTCGTGCGCGCTTGCTGTTCGAGACAGAGGCACACAGTCACGAATAGTGG
AGAACAAATGGCTGCTCCTATTTTCCAACTGAGCGATAAGTGCCGTAGCT
CCTCGAATACTGAACGAAATCCCGTGAAACAAGGCCTAGCGTGTGCAAAT
GAGAGGGGCTAGCGATAGCGTGTGGATTGTTATCGCAATAAGCATAGAAA
CAGATATAGAACGCAGAACAATGCAGGTCTTTTGAACGCAGACTCTTTTG
AAAAAGAACAATTTACGCATTTCTGTCGTTTTTCTTGTGTGTGTGTGTCT
TTTTTTTTGTTTTTTTTTGTGTGTGTGTTTTGTGTGTGTGTGTTTTATCT
CCGTTTGTTTGTTTTGTTTTTCTGAACCCAAAGACAACAAAATGAGTGAA
TGAAGAGAATCCGTCAGTTCACTTTCCCCCCCATATATCTTTTTGTAAGA
CACAGCCTGATATTTGTAGCATTTGATAACTGAGATTGCTGACATTATTG
TTGTTATTTTTTCGCCCTAGGCGATCACCAACCTTGAAATATTCGTGTGA
TGATATCTTGCGCTACTTCTTTGTGCTGATGGTGATGCTGCCACTAATGA
CTAATGATACTCGTTTCTATTTTTCCCACCGTACTGCATGCGAAACTACA
TGTCAAAACACGAAGAAAAAAAAAACACGTTTGAAGAAAAAAAAGCAACA
TGAATACCGTATATATTGTCACGTCCTAGAGTTTAGTGTTTGAGGAAGAA
GCAAATAATTTTATCAAACCGAAAAACGTTGTTGCTGTAAAAATGAACGA
ACGAATTGGAACGAGTGATGACAAAAAATCCTTCGAAAATCAAACCATAT
AGTAACACAAAGAAAATTATGCGCCTCCATTGAGTATGTACTAGTATATG
TATATATATATATATATATATACATATATTTCTTGAGAACATCCATATTT
GGATAATGCTTGAGACAAAATGCTTACATCTGGTACACATGCACTTCCAG
GTTCGCCTTAACAAGAACCACTGCCCTCCACGTCGAACTCAATTTATTCA
GATGGAACAACTCAAAACGTTCGCAAAGAGGGCCAACCTTGAGCGGGAGG
AATGCCTGGAGAGGGAGCGAGCTTCCGCGCGTGAAGCGGGGTCGAGGACA
GGTAATGTTTCGTGGCTACTGTGTAACTCGCACAGCAGTGCATTTAGACA
TAGCCGACTCACTACGTTGGGCGGGTCTCACAGACCTTTCTCGTAGAGTA
GAGACGGGTTGGGATGACCAGTAAACACAGCTAAGCCATTCGTTATTTGT
AGGGGGCTGTCGTGATCGAGCCCGACGCAGTATAGTGTATCGGAATATCT
AGTTTAAGAAGAACACTGAATTACGTAGATCCTCCGGAGACCAAGACGAA
AAGCCTTTACAGACGTTTGCCTTTTGGCCGTGTCTTAACGCGGAACAGTT
AAAAACGAATTTTCCCTCCCTTGAAAAAAACAGAAAAAGAAAAAGATTTC
TTGGAGACTTCTGAAACAAACGAGTTGTGTGTGCAAAATGTTGACGTTTG
TACCGAATATGACCGATACAAATGGTTCGGTGACCGGATTGAACAATGGA
AAGTCTTGAGAAACACCACGACCGCAGATACCAAACACGCACAGAGAGAC
TGGGGGCATGTGCACCAGTAGCTCGCAAGATAGACCTTGCTCAGCTGGAC
ACGCTAGCCTTCATTGACGCGAATTGGTCCTGTATCTGGGGAGCCACAGT
ATTTCGCGTCAAATTGCAATTACAACAGTGCCATTTTTGCCTGTTTTCCC
GTGTCTGGCCAAATTAAGTGCACGATGCTCAGTTGATAAAGAGCTGTGGC
CCGATCTACGTTTTGCTGTGTCGGGGGCAGTTAACCTCTCTCTCCAACGA
TGCGTGTTGCTGCATTCCTTTGTCAACCGTTTGCAACCCACCGCCTTTGG
TCGACACGATGGGGCCTTGGTCCTACTTGGTGGCTATTTTTTCCCAACTG
TTCCAATCACTGGCATGCTCGTTTTCGTTTTGGCGTCTACAGCGATCGAT
TCCTTTTTGTAGTACATCCTGTGGAATTTGAAAAGACGCGGTGGAATAGT
GTCGTGGCGAAAAACGAAAATATCTGTGATTGGTCAGAGGTTCACTTGAC
CAATCACAGTACAAATGTGTTTTTCTGAAAACGGAAATTTCATATCTCCG
TTCGTCGAAAAGACACAGCCTTCCCTCGAACATACATAAATCAACCCCCT
TGTAGTACGTCGTCACCCTAGAGATCTGGATATGTAACGGTCGCATACTA
CCTGATTAGCAATACATGAAACCACATGATACGACGGACAGGCGAGTGGG
ATGGCCACGGCGGCGGCCGTAGCGGCAGCACTGGCTGTCGCTGTAGTGAA
GGCGGTCAGCGCGGCACCGTGAGCGACGGCAGGGAGGCGAGGTCTCCACT
GACGAACAAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig11160:3432..7793-

>mRNA_H-paniculata_contig11160.743.1 ID=mRNA_H-paniculata_contig11160.743.1|Name=mRNA_H-paniculata_contig11160.743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig11160:3432..7793- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGAGGAACGAGCAACCAAGCAAGAGGCCTACCGTGTACAGCTGGCCGC
GAAGGCGGAGGAACGAGCAACCAAGCAAGAGGCCTACCGTGTACAGCTGG
CCGCGAAGATGGAACAACTCAAAACGTTCGCAAAGAGGGCCAACCTTGAG
CGGGAGGAATGCCTGGAGAGGGAGCGAGCTTCCGCGCGTGAAGCGGGGTC
GAGGACAGATGGAACAACTCAAAACGTTCGCAAAGAGGGCCAACCTTGAG
CGGGAGGAATGCCTGGAGAGGGAGCGAGCTTCCGCGCGTGAAGCGGGGTC
GAGGACAGGCGAGTGGGATGGCCACGGCGGCGGCCGTAGCGGCAGCACTG
GCTGTCGCTGTAGTGAAGGCGGTCAGCGCGGCACCGTGAGCGACGGCAGG
GAGGCGAGGTCTCCACTGACGAACAAGGCGAGTGGGATGGCCACGGCGGC
GGCCGTAGCGGCAGCACTGGCTGTCGCTGTAGTGAAGGCGGTCAGCGCGG
CACCGTGAGCGACGGCAGGGAGGCGAGGTCTCCACTGACGAACAAG
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