mRNA_H-paniculata_contig27166.7429.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27166.7429.1
Unique NamemRNA_H-paniculata_contig27166.7429.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27166.7429.1 vs. uniprot
Match: D7FTJ4_ECTSI (Cytochrome P450 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ4_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 3.950e-22
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    7 PILGQALELAKGAPWDVMTRWATEYGGIYRFSLFWNTNVVVSDPAYMKEVMRNKV 171
            P+LG AL+LA+GAPWD MTRWA EYG IY+FSLF N NVV+SDP++MKEVMR K+
Sbjct:   78 PVLGPALKLAEGAPWDTMTRWAQEYGSIYKFSLFGNVNVVLSDPSFMKEVMRTKI 132
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BLAST of mRNA_H-paniculata_contig27166.7429.1 vs. uniprot
Match: A0A6H5JQ84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ84_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.130e-20
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    7 PILGQALELAKGAPWDVMTRWATEYGGIYRFSLFWNTNVVVSDPAYMKEVMRNKV 171
            P+LG AL+LA+GAPWD MTRWA EYG IY+FSLF N NVV+SDP++MKEVMR K+
Sbjct:   78 PVLGPALKLAEGAPWDTMTRWAQEYGSIYKFSLFGNVNVVLSDPSFMKEVMRTKI 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27166.7429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTJ4_ECTSI3.950e-2272.73Cytochrome P450 n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JQ84_9PHAE2.130e-2072.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27166contigH-paniculata_contig27166:2924..3136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929817.5498836-CDS-H-paniculata_contig27166:2923..31361622929817.5498836-CDS-H-paniculata_contig27166:2923..3136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27166 2924..3136 -
1691481024.6670163-CDS-H-paniculata_contig27166:2923..31361691481024.6670163-CDS-H-paniculata_contig27166:2923..3136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27166 2924..3136 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27166.7429.1prot_H-paniculata_contig27166.7429.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27166 2924..3136 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27166.7429.1

>prot_H-paniculata_contig27166.7429.1 ID=prot_H-paniculata_contig27166.7429.1|Name=mRNA_H-paniculata_contig27166.7429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
GWPILGQALELAKGAPWDVMTRWATEYGGIYRFSLFWNTNVVVSDPAYMK
EVMRNKVCDSAFKILMIPRH*
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mRNA from alignment at H-paniculata_contig27166:2924..3136-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27166.7429.1 ID=mRNA_H-paniculata_contig27166.7429.1|Name=mRNA_H-paniculata_contig27166.7429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig27166:2924..3136- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGGCCCATCCTCGGCCAAGCGCTGGAGCTCGCGAAAGGAGCTCCGTG
GGACGTGATGACTCGGTGGGCGACGGAGTATGGAGGCATCTATAGGTTCT
CGCTGTTCTGGAATACCAACGTGGTGGTGTCCGACCCTGCCTATATGAAG
GAGGTCATGCGAAACAAGGTCTGCGACTCCGCTTTTAAAATATTGATGAT
CCCACGTCATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig27166:2924..3136-

>mRNA_H-paniculata_contig27166.7429.1 ID=mRNA_H-paniculata_contig27166.7429.1|Name=mRNA_H-paniculata_contig27166.7429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig27166:2924..3136- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGGCCCATCCTCGGCCAAGCGCTGGAGCTCGCGAAAGGAGCTCCGTG
GGACGTGATGACTCGGTGGGCGACGGAGTATGGAGGCATCTATAGGTTCT
CGCTGTTCTGGAATACCAACGTGGTGGTGTCCGACCCTGCCTATATGAAG
GAGGTCATGCGAAACAAGGTCTGCGACTCCGCTTTTAAAATATTGATGAT
CCCACGTCATTAAGGGTGGCCCATCCTCGGCCAAGCGCTGGAGCTCGCGA
AAGGAGCTCCGTGGGACGTGATGACTCGGTGGGCGACGGAGTATGGAGGC
ATCTATAGGTTCTCGCTGTTCTGGAATACCAACGTGGTGGTGTCCGACCC
TGCCTATATGAAGGAGGTCATGCGAAACAAGGTCTGCGACTCCGCTTTTA
AAATATTGATGATCCCACGTCATTAA
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