mRNA_H-paniculata_contig27130.7424.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27130.7424.1
Unique NamemRNA_H-paniculata_contig27130.7424.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27130.7424.1 vs. uniprot
Match: A0A067DPV9_CITSI (MCM domain-containing protein (Fragment) n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067DPV9_CITSI)

HSP 1 Score: 82.0 bits (201), Expect = 2.100e-18
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 GYTRMVRFEHVCYHTSVALAKGLKSSQCCVFNICAKDGGEWMLEAGALVLADRGLCCIDEFSAIREHDRATIHE 222
            G ++ ++F     + SV +  GL S+   +     KDGGEWMLEAGALVLAD GLCCIDEF ++REHDRATIHE
Sbjct:    2 GKSQFLKFAAKLSNRSV-ITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHE 74
[Close]
BLAST of mRNA_H-paniculata_contig27130.7424.1 vs. uniprot
Match: A0A835Z090_9STRA (MCM2/3/5 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z090_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.630e-18
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:    1 GYTRMVRFEHVCYHTSVALAKGLKSSQCCVFNICAKDGGEWMLEAGALVLADRGLCCIDEFSAIREHDRATIHE 222
            G ++ +RF       SV L  G+ ++   +     KDGGEWMLEAGALVLADRGLCCIDEFSAIREHDRATIHE
Sbjct:  529 GKSQFLRFAAKLSPRSV-LTTGVGTTSAGLTCTAVKDGGEWMLEAGALVLADRGLCCIDEFSAIREHDRATIHE 601
[Close]
BLAST of mRNA_H-paniculata_contig27130.7424.1 vs. uniprot
Match: D8LM73_ECTSI (MCM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM73_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 4.950e-18
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:    1 GYTRMVRFEHVCYHTSVALAKGLKSSQCCVFNICAKDGGEWMLEAGALVLADRGLCCIDEFSAIREHDRATIHE 222
            G ++ +RF       SV L  G+ ++   +     KDGGEWMLEAGALVLADRGLCCIDEFSAIREHDRATIHE
Sbjct:  364 GKSQFLRFAAKLSPRSV-LTTGVGTTSAGLTCSAVKDGGEWMLEAGALVLADRGLCCIDEFSAIREHDRATIHE 436
[Close]
BLAST of mRNA_H-paniculata_contig27130.7424.1 vs. uniprot
Match: A0A0K9PHI8_ZOSMR (DNA helicase n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PHI8_ZOSMR)

HSP 1 Score: 84.7 bits (208), Expect = 2.320e-17
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 GYTRMVRFEHVCYHTSVALAKGLKSSQCCVFNICAKDGGEWMLEAGALVLADRGLCCIDEFSAIREHDRATIHE 222
            G ++ ++F     H SV +  GL S+   +     KDGGEWMLEAGALVLAD GLCCIDEF ++REHDRATIHE
Sbjct:  396 GKSQFLKFAAKLSHRSV-ITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHE 468
[Close]
BLAST of mRNA_H-paniculata_contig27130.7424.1 vs. uniprot
Match: UPI000B8CE6B4 (probable DNA helicase MCM9 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CE6B4)

HSP 1 Score: 80.9 bits (198), Expect = 3.300e-17
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:   55 LAKGLKSSQCCVFNICAKDGGEWMLEAGALVLADRGLCCIDEFSAIREHDRATIHE 222
            +  GL S+   +     KDGGEWMLEAGALVLAD GLCCIDEF ++REHDRATIHE
Sbjct:   19 ITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHE 74
[Close]
BLAST of mRNA_H-paniculata_contig27130.7424.1 vs. uniprot
Match: A0A1D6LVG3_MAIZE (Putative DNA helicase MCM9 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6LVG3_MAIZE)

HSP 1 Score: 80.5 bits (197), Expect = 6.040e-17
Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 GYTRMVRFEHVCYHTSVALAKGLKSSQCCVFNICAKDGGEWMLEAGALVLADRGLCCIDEFSAIREHDRATIHE 222
            G ++ ++F     + SV +  GL S+   +     KDGGEWMLEAGALVLAD GLCCIDEF ++REHDR TIHE
Sbjct:  116 GKSQFLKFAAKLSNRSV-ITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRTTIHE 188
[Close]
BLAST of mRNA_H-paniculata_contig27130.7424.1 vs. uniprot
Match: A0A2G2VAJ7_CAPBA (Putative DNA helicase MCM9 n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VAJ7_CAPBA)

HSP 1 Score: 82.0 bits (201), Expect = 6.600e-17
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 GYTRMVRFEHVCYHTSVALAKGLKSSQCCVFNICAKDGGEWMLEAGALVLADRGLCCIDEFSAIREHDRATIHE 222
            G ++ ++F     + SV +  GL S+   +     KDGGEWMLEAGALVLAD GLCCIDEF ++REHDRATIHE
Sbjct:   87 GKSQFLKFAAKLSNRSV-ITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHE 159
[Close]
BLAST of mRNA_H-paniculata_contig27130.7424.1 vs. uniprot
Match: A0A426YIB0_ENSVE (MCM domain-containing protein (Fragment) n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426YIB0_ENSVE)

HSP 1 Score: 82.0 bits (201), Expect = 7.000e-17
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 GYTRMVRFEHVCYHTSVALAKGLKSSQCCVFNICAKDGGEWMLEAGALVLADRGLCCIDEFSAIREHDRATIHE 222
            G ++ ++F     + SV +  GL S+   +     KDGGEWMLEAGALVLAD GLCCIDEF ++REHDRATIHE
Sbjct:  124 GKSQFLKFAAKLSNRSV-ITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHE 196
[Close]
BLAST of mRNA_H-paniculata_contig27130.7424.1 vs. uniprot
Match: A0A067DQ65_CITSI (MCM domain-containing protein (Fragment) n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067DQ65_CITSI)

HSP 1 Score: 82.0 bits (201), Expect = 7.660e-17
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 GYTRMVRFEHVCYHTSVALAKGLKSSQCCVFNICAKDGGEWMLEAGALVLADRGLCCIDEFSAIREHDRATIHE 222
            G ++ ++F     + SV +  GL S+   +     KDGGEWMLEAGALVLAD GLCCIDEF ++REHDRATIHE
Sbjct:    2 GKSQFLKFAAKLSNRSV-ITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHE 74
[Close]
BLAST of mRNA_H-paniculata_contig27130.7424.1 vs. uniprot
Match: A0A7J7NSZ6_9MAGN (MCM domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7NSZ6_9MAGN)

HSP 1 Score: 82.0 bits (201), Expect = 8.950e-17
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 GYTRMVRFEHVCYHTSVALAKGLKSSQCCVFNICAKDGGEWMLEAGALVLADRGLCCIDEFSAIREHDRATIHE 222
            G ++ ++F     + SV +  GL S+   +     KDGGEWMLEAGALVLAD GLCCIDEF ++REHDRATIHE
Sbjct:   26 GKSQFLKFAAKLSNRSV-ITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHE 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27130.7424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067DPV9_CITSI2.100e-1856.76MCM domain-containing protein (Fragment) n=1 Tax=C... [more]
A0A835Z090_9STRA3.630e-1862.16MCM2/3/5 family-domain-containing protein n=1 Tax=... [more]
D8LM73_ECTSI4.950e-1862.16MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0K9PHI8_ZOSMR2.320e-1758.11DNA helicase n=1 Tax=Zostera marina TaxID=29655 Re... [more]
UPI000B8CE6B43.300e-1767.86probable DNA helicase MCM9 n=1 Tax=Carica papaya T... [more]
A0A1D6LVG3_MAIZE6.040e-1755.41Putative DNA helicase MCM9 n=1 Tax=Zea mays TaxID=... [more]
A0A2G2VAJ7_CAPBA6.600e-1756.76Putative DNA helicase MCM9 n=1 Tax=Capsicum baccat... [more]
A0A426YIB0_ENSVE7.000e-1756.76MCM domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A067DQ65_CITSI7.660e-1756.76MCM domain-containing protein (Fragment) n=1 Tax=C... [more]
A0A7J7NSZ6_9MAGN8.950e-1756.76MCM domain-containing protein n=1 Tax=Kingdonia un... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27130contigH-paniculata_contig27130:2878..3120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue3.1e-15
Seed eggNOG ortholog2880.D8LM73
Preferred nameMCM9
KEGG koko:K10738
Hectar predicted targeting categoryother localisation
GOsGO:0000724,GO:0000725,GO:0005575,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0032991,GO:0033554,GO:0034641,GO:0042555,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097362,GO:1901360
EggNOG free text desc.DNA replication initiation
EggNOG OGsCOG1241@1,KOG0477@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032
Exons1
Model size243
Cds size231
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929816.9952219-UTR-H-paniculata_contig27130:2877..28891622929816.9952219-UTR-H-paniculata_contig27130:2877..2889Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27130 2878..2889 +
1691481024.3462472-UTR-H-paniculata_contig27130:2877..28891691481024.3462472-UTR-H-paniculata_contig27130:2877..2889Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27130 2878..2889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929817.0122283-CDS-H-paniculata_contig27130:2889..31201622929817.0122283-CDS-H-paniculata_contig27130:2889..3120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27130 2890..3120 +
1691481024.3576195-CDS-H-paniculata_contig27130:2889..31201691481024.3576195-CDS-H-paniculata_contig27130:2889..3120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27130 2890..3120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27130.7424.1prot_H-paniculata_contig27130.7424.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27130 2890..3120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27130.7424.1

>prot_H-paniculata_contig27130.7424.1 ID=prot_H-paniculata_contig27130.7424.1|Name=mRNA_H-paniculata_contig27130.7424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MVRFEHVCYHTSVALAKGLKSSQCCVFNICAKDGGEWMLEAGALVLADRG
LCCIDEFSAIREHDRATIHEVHVKLG*
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mRNA from alignment at H-paniculata_contig27130:2878..3120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27130.7424.1 ID=mRNA_H-paniculata_contig27130.7424.1|Name=mRNA_H-paniculata_contig27130.7424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at H-paniculata_contig27130:2878..3120+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTACACACGAATGGTTCGTTTTGAGCATGTGTGTTATCATACATCGGT
AGCACTTGCAAAGGGTTTGAAAAGCTCACAATGCTGTGTGTTTAACATAT
GTGCCAAGGATGGAGGCGAGTGGATGCTGGAGGCTGGTGCTCTAGTTTTG
GCGGATCGCGGTCTGTGCTGCATTGATGAATTCTCGGCCATCAGAGAGCA
CGATCGGGCAACTATCCATGAGGTACACGTAAAGCTGGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig27130:2878..3120+

>mRNA_H-paniculata_contig27130.7424.1 ID=mRNA_H-paniculata_contig27130.7424.1|Name=mRNA_H-paniculata_contig27130.7424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig27130:2878..3120+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCGTTTTGAGCATGTGTGTTATCATACATCGGTAGCACTTGCAAA
GGGTTTGAAAAGCTCACAATGCTGTGTGTTTAACATATGTGCCAAGGATG
GAGGCGAGTGGATGCTGGAGGCTGGTGCTCTAGTTTTGGCGGATCGCGGT
CTGTGCTGCATTGATGAATTCTCGGCCATCAGAGAGCACGATCGGGCAAC
TATCCATGAGGTACACGTAAAGCTGGGGTGAATGGTTCGTTTTGAGCATG
TGTGTTATCATACATCGGTAGCACTTGCAAAGGGTTTGAAAAGCTCACAA
TGCTGTGTGTTTAACATATGTGCCAAGGATGGAGGCGAGTGGATGCTGGA
GGCTGGTGCTCTAGTTTTGGCGGATCGCGGTCTGTGCTGCATTGATGAAT
TCTCGGCCATCAGAGAGCACGATCGGGCAACTATCCATGAGGTACACGTA
AAGCTGGGGTGA
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