mRNA_H-paniculata_contig27127.7421.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig27127.7421.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE) HSP 1 Score: 159 bits (403), Expect = 1.330e-42 Identity = 97/211 (45.97%), Postives = 111/211 (52.61%), Query Frame = 1
Query: 1 CSNGIEGYQSKNSCCSLECGQCGGAGCSTANGLTSAECCEGGVQQSGRLCDVEGSAPCIIDAGNSNIWDTAPAGEVTLDKGVCDGGIIGIQKKNSCCSLECGQCGGSGCSTANGLTAAECCDGTVQQSGVLCDVSLEAPCIIDAGKFVVICSCGFCDASGWFLEHTGTCDRGIPGIQKKNSCCSLECGQCGGSGCSTANGLTAAECCDSGV 633
C GI G Q+K CCS CG CGG GCS +G + A CC GGV SGRLC V G APCI + T++ +CDGGIIGIQ + CCS CG C GSGCS +G A CC G V+ SG C V+ EAPCI CD GI GIQ + CCSL CG CGGSGCS +G + A CC GV
Sbjct: 316 CDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSDA-CCGGGVTASGRLCAVTGEAPCITGPAPTPEXXXXXXXXXTVEAPMCDGGIIGIQTSDVCCSASCGSCXGSGCSGRDGGPDA-CCGGGVRASGRFCSVTGEAPCITGPAPTPXXXX----XXXXXXTIEVPECDGGIVGIQASDVCCSLSCGSCGGSGCSGRDGGSDA-CCGGGV 519
BLAST of mRNA_H-paniculata_contig27127.7421.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI) HSP 1 Score: 153 bits (386), Expect = 3.150e-42 Identity = 87/211 (41.23%), Postives = 115/211 (54.50%), Query Frame = 1
Query: 1 CSNGIEGYQSKNSCCSLECGQCGGAGCSTANGLTSAECCEGGVQQSGRLCDVEGSAPCIIDAGNSNIWDTAPAGEVTLDKGVCDGGIIGIQKKNSCCSLECGQCGGSGCSTANGLTAAECCDGTVQQSGVLCDVSLEAPCIIDAGKFVVICSCGFCDASGWFLEHTGTCDRGIPGIQKKNSCCSLECGQCGGSGCSTANGLTAAECCDSGV 633
C GI G Q + CS CG CGG GC++ +G + A CC GGV+ SGR C V G APC+ + T + +CDGGI+GIQ+ + CCS CG CGG+GC++ +G + A CC G V+ SG C V+ EAPC+ CD GI GIQ+ + CCSL CG CGG+GC++ +G + A CC GV
Sbjct: 64 CDGGIVGIQQSDISCSSSCGSCGGTGCTSRDGGSEA-CCGGGVRASGRYCSVTGEAPCMTGPAPTPEXXXXXXXXXTDEVSMCDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGSEA-CCGGGVRASGRYCSVTGEAPCM---------------------TNEVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSEA-CCGGGV 250
BLAST of mRNA_H-paniculata_contig27127.7421.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI) HSP 1 Score: 158 bits (399), Expect = 1.290e-41 Identity = 91/211 (43.13%), Postives = 113/211 (53.55%), Query Frame = 1
Query: 1 CSNGIEGYQSKNSCCSLECGQCGGAGCSTANGLTSAECCEGGVQQSGRLCDVEGSAPCIIDAGNSNIWDTAPAGEVTLDKGVCDGGIIGIQKKNSCCSLECGQCGGSGCSTANGLTAAECCDGTVQQSGVLCDVSLEAPCIIDAGKFVVICSCGFCDASGWFLEHTGTCDRGIPGIQKKNSCCSLECGQCGGSGCSTANGLTAAECCDSGV 633
C GI G Q+ + CCS CG C G GCS +G + A CC GGVQ SGR C V G APC+ + T++ +CDGGI+GIQ + CCS CG CGG+GCS+ +G + A CC G V+ SG C V+ EAPC+ A CD GI GIQ + CCS CG CGG+GCS +G + A CC GV
Sbjct: 108 CDGGIVGIQASDVCCSASCGSCAGTGCSGRDGGSGA-CCGGGVQASGRYCSVTGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQTSDVCCSASCGSCGGTGCSSRDGGSGA-CCGGGVRASGRYCSVTGEAPCMTGAAPTPEXXX----XXXXXXTVEVPMCDGGIVGIQTSDVCCSTSCGSCGGTGCSGRDGGSGA-CCGGGV 311
BLAST of mRNA_H-paniculata_contig27127.7421.1 vs. uniprot
Match: D7G3T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T6_ECTSI) HSP 1 Score: 157 bits (397), Expect = 1.440e-41 Identity = 88/211 (41.71%), Postives = 116/211 (54.98%), Query Frame = 1
Query: 1 CSNGIEGYQSKNSCCSLECGQCGGAGCSTANGLTSAECCEGGVQQSGRLCDVEGSAPCIIDAGNSNIWDTAPAGEVTLDKGVCDGGIIGIQKKNSCCSLECGQCGGSGCSTANGLTAAECCDGTVQQSGVLCDVSLEAPCIIDAGKFVVICSCGFCDASGWFLEHTGTCDRGIPGIQKKNSCCSLECGQCGGSGCSTANGLTAAECCDSGV 633
C GI G Q + CCS CG CGG GC++ +G + A CC GGV+ SGR C V G APC+ + T + +CDGGI+GIQ+ + CCS CG CGG+GC++ +G + A CC G V+ SG C V+ EAPC+ CD GI GIQ+ + CCSL CG CGG+GC++ +G + A CC GV
Sbjct: 25 CDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGSEA-CCGGGVRASGRFCSVTGEAPCMTGPAPTPXXXXXXXXXXTDEVPMCDGGIVGIQQSDICCSSRCGSCGGTGCTSRDGGSEA-CCGGGVRASGRYCSVTGEAPCM---------------------TNEVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSEA-CCGGGV 211
BLAST of mRNA_H-paniculata_contig27127.7421.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI) HSP 1 Score: 157 bits (397), Expect = 2.180e-41 Identity = 99/223 (44.39%), Postives = 115/223 (51.57%), Query Frame = 1
Query: 1 CSNGIEGYQSKNS-CCSLECGQCGGAGCSTA---NGLTSAECCEGGVQQSGRLCDVEGSAPCII----DAGNSNIWDTAPAGEVTLDKGVCDGGIIGIQKKNS-CCSLECGQCGGSGCSTA---NGLTAAECCDGTVQQSGVLCDVSLEAPCIIDAGKFVVICSCGFCDASGWFLEHTGTCDRGIPGIQKKNS-CCSLECGQCGGSGCSTA---NGLTAAECC 621
CS+G EG CC L CGQC G+GCSTA NGLTS+ CC GG++ SG CD G APCI DAG+ G C GI G+ CC L CGQC GSGCSTA NGLT++ CC G ++ SG CD + APCI + GTC GI G+ CC L CGQC GSGCSTA NGLT++ CC
Sbjct: 270 CSDGTEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDAGDDXXXXXXXXXXXXXXVGTCSDGIEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDAGDDXXXXXXXXXXXXXXVGTCSDGIEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCC 492
BLAST of mRNA_H-paniculata_contig27127.7421.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE) HSP 1 Score: 155 bits (392), Expect = 4.910e-40 Identity = 97/221 (43.89%), Postives = 115/221 (52.04%), Query Frame = 1
Query: 1 CSNGIEGYQSKNSCCSLECGQCGGAGCSTANGLTSAECCEGGVQQSGRLCDVEGSAPCIIDAGNSNIWDTAPAGEVTL-------DKG---VCDGGIIGIQKKNSCCSLECGQCGGSGCSTANGLTAAECCDGTVQQSGVLCDVSLEAPCIIDAGKFVVICSCGFCDASGWFLEHTGTCDRGIPGIQKKNSCCSLECGQCGGSGCSTANGLTAAECCDSGV 633
C GI G QS + CCSL CG CGG GC+ +G A CC GGV+ SGR C V G APCI AP E T D+G +CDGGI+GIQ + CC+ CG CGGSGC+ +G A CC G V+ SG C V+ EAPC+ E CD GI GIQ + CCSL CG CGG+GC+ +G A CC GV
Sbjct: 53 CDGGIVGIQSSDVCCSLSCGSCGGTGCTGRDGGADA-CCGGGVRSSGRFCSVTGEAPCITGP--------APTPEPTXXXXXXXXDEGAVPMCDGGIVGIQSSDVCCTSSCGSCGGSGCTGRDGGEDA-CCGGGVRASGRYCSVTGEAPCMTGPAPTPXXXX----XXXXXXTEEVPMCDGGIVGIQSSDVCCSLSCGSCGGTGCTVRDG-GADACCGGGV 258
BLAST of mRNA_H-paniculata_contig27127.7421.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI) HSP 1 Score: 153 bits (387), Expect = 2.270e-39 Identity = 86/211 (40.76%), Postives = 111/211 (52.61%), Query Frame = 1
Query: 1 CSNGIEGYQSKNSCCSLECGQCGGAGCSTANGLTSAECCEGGVQQSGRLCDVEGSAPCIIDAGNSNIWDTAPAGEVTLDKGVCDGGIIGIQKKNSCCSLECGQCGGSGCSTANGLTAAECCDGTVQQSGVLCDVSLEAPCIIDAGKFVVICSCGFCDASGWFLEHTGTCDRGIPGIQKKNSCCSLECGQCGGSGCSTANGLTAAECCDSGV 633
C GI G Q+ + CCS CG CGG+GC+ +G S CC GGV+ SGR C + G APC+ + T++ +CDGGI+GIQ + CCS CG CGGSGC+ +G + + CC G V+ SG C ++ EAPC+ CD GI GIQ + CCS CG CGGSGCS +G + CC GV
Sbjct: 158 CDGGIVGIQTSDVCCSASCGSCGGSGCTGRDG-GSESCCGGGVRASGRYCSITGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCTGRDGGSES-CCGGGVRASGRYCSITGEAPCMTGPAPTPXXXX----XXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCSGRDGGSE-SCCGGGV 361
BLAST of mRNA_H-paniculata_contig27127.7421.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI) HSP 1 Score: 134 bits (338), Expect = 8.790e-34 Identity = 81/216 (37.50%), Postives = 109/216 (50.46%), Query Frame = 1
Query: 1 CSNGIEGYQSKNS--CCSLECGQCGGAGCSTAN--GLTSAECCEGGVQQSGRLCDVEGSAPCIIDAGNSNIWDTAPAGEVTLDKGVCDGGIIGIQKKNS--CCSLECGQ-CGGSGCSTANGLTAAECCDGTVQQSGVLCDVSLEAPCIIDAGKFVVICSCGFCDASGWFLEHTGTCDRGIPGIQKKNS--CCSLECGQCGGSGCSTANGLTAAECC 621
C+ GI G +S + CC+LECG CGG GC+ AN LT+ +CC + +SG +C G APCI+ E VCD G G+Q ++ CC LECG+ CGG GC T G+ A++CC ++QSG++C +EAPC A C G PGI+ +++ CC C CGGS C GLT A+CC
Sbjct: 25 CAGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGVMCSDTGVAPCILST------------EAASADSVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGTIPGVDASQCCASIIEQSGIVCGDGIEAPCTQVA-----------------VAVADSVCSNGFPGIENEDATVCCDPACVVCGGSTCGNVAGLTGADCC 211
BLAST of mRNA_H-paniculata_contig27127.7421.1 vs. uniprot
Match: D7FJ69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI) HSP 1 Score: 127 bits (319), Expect = 2.220e-33 Identity = 68/165 (41.21%), Postives = 87/165 (52.73%), Query Frame = 1
Query: 145 LCDVEGSAPCIIDAGNSNIWDTAPAGEVTLDKGVCDGGIIGIQKKNSCCSLECGQCGGSGCST-ANGLTAAECCDGTVQQSGVLCDVSLEAPCIIDAGKFVVICSCGFCDASGWFLEHTGTCDRGIPGIQKKNSCCSLECGQCGGSGCST-ANGLTAAECCDSGV 633
+CD+ GSAPC++ + P VT VC GI G+Q SCC ECG CGGSGC+ GL CC+G +++ G LC + LEAPC++DA + E T C G PGIQ SCC ECG+CGG GC GL A +CC+S +
Sbjct: 1 MCDIFGSAPCVLGYAPAPTPVAEPVAPVTEPTDVCSNGIPGVQSGVSCCLAECGGCGGSGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVVDASAPA---PSPVAEPVAPVTEPTDVCSNGFPGIQSGVSCCLAECGECGGRGCGEFGGGLGADKCCESDI 162
BLAST of mRNA_H-paniculata_contig27127.7421.1 vs. uniprot
Match: A0A6H5JGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP9_9PHAE) HSP 1 Score: 119 bits (297), Expect = 5.420e-30 Identity = 71/149 (47.65%), Postives = 84/149 (56.38%), Query Frame = 1
Query: 1 CSNGIEGYQSKNS-CCSLECGQCGGAGCSTAN---GLTSAECCEGGVQQSGRLCDVEGSAPCIIDAGNSNIWDTAPAGEVTLDKGVCDGGIIGIQKKNS-CCSLECGQCGGSGCSTA---NGLTAAECCDGTVQQSGVLCDVSLEAPCI 423
C++GIEG CC LECGQC G GC+ GL S CC GGV+ +G CDV G APCI + + P GE C GGI GI CC LECGQCGG+GCS+A +GL + CC+ V SG CDV+ EAPCI
Sbjct: 48 CNDGIEGIDGNGVVCCPLECGQCAGTGCTNFGADFGLGSESCCGGGVKDAGNYCDVTGEAPCI--------YGSPPEGE-------CSGGIEGIDGNGVVCCPLECGQCGGTGCSSAGAASGLGSESCCESGVDSSGRYCDVTGEAPCI 181 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27127.7421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig27127.7421.1 >prot_H-paniculata_contig27127.7421.1 ID=prot_H-paniculata_contig27127.7421.1|Name=mRNA_H-paniculata_contig27127.7421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp CSNGIEGYQSKNSCCSLECGQCGGAGCSTANGLTSAECCEGGVQQSGRLCback to top mRNA from alignment at H-paniculata_contig27127:1368..3347+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig27127.7421.1 ID=mRNA_H-paniculata_contig27127.7421.1|Name=mRNA_H-paniculata_contig27127.7421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1980bp|location=Sequence derived from alignment at H-paniculata_contig27127:1368..3347+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig27127:1368..3347+ >mRNA_H-paniculata_contig27127.7421.1 ID=mRNA_H-paniculata_contig27127.7421.1|Name=mRNA_H-paniculata_contig27127.7421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig27127:1368..3347+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |