mRNA_H-paniculata_contig27104.7418.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27104.7418.1
Unique NamemRNA_H-paniculata_contig27104.7418.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27104.7418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27104contigH-paniculata_contig27104:17..487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929816.3995733-CDS-H-paniculata_contig27104:16..4871622929816.3995733-CDS-H-paniculata_contig27104:16..487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27104 17..487 -
1691481024.0787277-CDS-H-paniculata_contig27104:16..4871691481024.0787277-CDS-H-paniculata_contig27104:16..487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27104 17..487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27104.7418.1prot_H-paniculata_contig27104.7418.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27104 17..487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27104.7418.1

>prot_H-paniculata_contig27104.7418.1 ID=prot_H-paniculata_contig27104.7418.1|Name=mRNA_H-paniculata_contig27104.7418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
RFSGDPERFAPWQARFGALARRNLLIRPLMEERPEREAEDSQGTWGEINA
KLFDILMLSVDGPTEAIVCQFAGRGISPGDGRSAYNALVENYEERTQARA
MDLHANLANMAVETPDQDPDEFILAVEKVVDNLFKLNEPVTDSRKRNIIL
AGLTDDY
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mRNA from alignment at H-paniculata_contig27104:17..487-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27104.7418.1 ID=mRNA_H-paniculata_contig27104.7418.1|Name=mRNA_H-paniculata_contig27104.7418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=471bp|location=Sequence derived from alignment at H-paniculata_contig27104:17..487- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATTCAGCGGAGATCCTGAGAGGTTCGCACCATGGCAAGCGCGTTTTGG
AGCGCTAGCAAGAAGAAATCTGCTGATTAGACCGCTAATGGAAGAACGAC
CCGAACGAGAGGCAGAAGACAGTCAGGGCACATGGGGCGAAATTAACGCG
AAGCTGTTCGACATACTGATGCTGTCTGTGGATGGACCAACTGAAGCCAT
AGTCTGCCAATTCGCGGGCCGAGGCATATCCCCAGGAGACGGGCGAAGTG
CTTACAACGCGTTGGTAGAAAATTACGAGGAGAGAACACAGGCGCGGGCA
ATGGATCTACACGCCAACCTCGCTAACATGGCCGTCGAGACACCAGACCA
AGACCCGGACGAGTTCATTCTTGCGGTCGAAAAAGTGGTTGACAATCTGT
TCAAGCTTAATGAGCCGGTGACCGACTCCCGCAAACGCAACATCATCCTC
GCCGGACTGACCGACGATTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig27104:17..487-

>mRNA_H-paniculata_contig27104.7418.1 ID=mRNA_H-paniculata_contig27104.7418.1|Name=mRNA_H-paniculata_contig27104.7418.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig27104:17..487- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATTCAGCGGAGATCCTGAGAGGTTCGCACCATGGCAAGCGCGTTTTGG
AGCGCTAGCAAGAAGAAATCTGCTGATTAGACCGCTAATGGAAGAACGAC
CCGAACGAGAGGCAGAAGACAGTCAGGGCACATGGGGCGAAATTAACGCG
AAGCTGTTCGACATACTGATGCTGTCTGTGGATGGACCAACTGAAGCCAT
AGTCTGCCAATTCGCGGGCCGAGGCATATCCCCAGGAGACGGGCGAAGTG
CTTACAACGCGTTGGTAGAAAATTACGAGGAGAGAACACAGGCGCGGGCA
ATGGATCTACACGCCAACCTCGCTAACATGGCCGTCGAGACACCAGACCA
AGACCCGGACGAGTTCATTCTTGCGGTCGAAAAAGTGGTTGACAATCTGT
TCAAGCTTAATGAGCCGGTGACCGACTCCCGCAAACGCAACATCATCCTC
GCCGGACTGACCGACGATTACCGATTCAGCGGAGATCCTGAGAGGTTCGC
ACCATGGCAAGCGCGTTTTGGAGCGCTAGCAAGAAGAAATCTGCTGATTA
GACCGCTAATGGAAGAACGACCCGAACGAGAGGCAGAAGACAGTCAGGGC
ACATGGGGCGAAATTAACGCGAAGCTGTTCGACATACTGATGCTGTCTGT
GGATGGACCAACTGAAGCCATAGTCTGCCAATTCGCGGGCCGAGGCATAT
CCCCAGGAGACGGGCGAAGTGCTTACAACGCGTTGGTAGAAAATTACGAG
GAGAGAACACAGGCGCGGGCAATGGATCTACACGCCAACCTCGCTAACAT
GGCCGTCGAGACACCAGACCAAGACCCGGACGAGTTCATTCTTGCGGTCG
AAAAAGTGGTTGACAATCTGTTCAAGCTTAATGAGCCGGTGACCGACTCC
CGCAAACGCAACATCATCCTCGCCGGACTGACCGACGATTAC
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