mRNA_H-paniculata_contig27081.7413.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27081.7413.1
Unique NamemRNA_H-paniculata_contig27081.7413.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27081.7413.1 vs. uniprot
Match: A0A6H5JSX2_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.630e-23
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 LRVCGSSMVRSISANEGEVVSVHHFNTELGSPLVYGTRKGGVRSWDLRAREV 156
            LRVCGSSMVR +S  EG VVSVHHFNTELGSPLVYGTRKGGVRSWDLRAREV
Sbjct: 1369 LRVCGSSMVRCVSPREGAVVSVHHFNTELGSPLVYGTRKGGVRSWDLRAREV 1420
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BLAST of mRNA_H-paniculata_contig27081.7413.1 vs. uniprot
Match: D8LRQ5_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ5_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 7.720e-23
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 LRVCGSSMVRSISANEGEVVSVHHFNTELGSPLVYGTRKGGVRSWDLRARE 153
            LRVCGSSMVR +S  EG VVSVHHFNTELGSPLVYGTRKGGVRSWDLRARE
Sbjct: 1101 LRVCGSSMVRCVSPREGAVVSVHHFNTELGSPLVYGTRKGGVRSWDLRARE 1151
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BLAST of mRNA_H-paniculata_contig27081.7413.1 vs. uniprot
Match: A0A835YVX7_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVX7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.040e-12
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 LRVCGSSMVRSISANEGEVVSVHHFNTELGSPLVYGTRKGGVRSWDLR 144
            LRV GSS+V+ ++A EG V+SVHHFNT+L S +VY T++G + +WDLR
Sbjct:   98 LRVAGSSLVKQVAAGEGPVLSVHHFNTDLASVVVYSTQRGRIHAWDLR 145
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BLAST of mRNA_H-paniculata_contig27081.7413.1 vs. uniprot
Match: A0A482RXG8_9ARCH (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXG8_9ARCH)

HSP 1 Score: 63.2 bits (152), Expect = 2.400e-10
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 LRVCGSSMVRSISAN-EGEVVSVHHFNTELGSPLVYGTRKGGVRSWDLRARE 153
            LRV GSS+VR+I +N EG ++SV H+NT++ S LVY T+ GGV  WDLR  E
Sbjct:   47 LRVSGSSVVRTIDSNQEGAILSVQHYNTDVCSVLVYATQSGGVHGWDLRCPE 98
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BLAST of mRNA_H-paniculata_contig27081.7413.1 vs. uniprot
Match: A0A7S1YUM8_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YUM8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.540e-9
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 RVCGSSMVRSISANEGEVVSVHHFNTELGSPLVYGTRKGGVRSWDLRA 147
            +V GSS+VR +   EGEV++V HFNT   S + + T+KG V SWDLR+
Sbjct: 1052 KVSGSSLVRQVDPQEGEVMAVSHFNTPSASVVAFATQKGSVHSWDLRS 1099
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BLAST of mRNA_H-paniculata_contig27081.7413.1 vs. uniprot
Match: A0A7S1BKV4_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKV4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.340e-8
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    4 RVCGSSMVRSISANEGEVVSVHHFNTELGSPLVYGTRKGGVRSWDLR 144
            R  GSS++R I+  EGEV++V HFNT+  S +++ T+ G + SWDLR
Sbjct: 1363 RAVGSSVIRKINLEEGEVMAVSHFNTDHSSTILFATQHGNIHSWDLR 1409
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BLAST of mRNA_H-paniculata_contig27081.7413.1 vs. uniprot
Match: A0A7S2VYW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYW9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 8.910e-8
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    4 RVCGSSMVRSISANEGEVVSVHHFNTELGSPLVYGTRKGGVRSWDLRARE 153
            RV GS+++R +   EGE+++V HFNT   S + +GT+ G + SWDLR+ +
Sbjct:   65 RVSGSTVLRRVHPQEGEILTVSHFNTPSASVVTFGTQGGVIHSWDLRSEK 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27081.7413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JSX2_9PHAE1.630e-2390.38Non-specific serine/threonine protein kinase n=1 T... [more]
D8LRQ5_ECTSI7.720e-2390.20Non-specific serine/threonine protein kinase n=1 T... [more]
A0A835YVX7_9STRA5.040e-1258.33Non-specific serine/threonine protein kinase n=1 T... [more]
A0A482RXG8_9ARCH2.400e-1057.69Non-specific serine/threonine protein kinase (Frag... [more]
A0A7S1YUM8_9STRA9.540e-952.08Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S1BKV4_9STRA3.340e-848.94Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S2VYW9_9STRA8.910e-844.00Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27081contigH-paniculata_contig27081:2293..2457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue7.4e-15
Seed eggNOG ortholog2880.D8LRQ5
KEGG koko:K08333
KEGG Pathwayko04136,ko04138,ko04140,ko04371,map04136,map04138,map04140,map04371
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005768,GO:0005770,GO:0005942,GO:0006464,GO:0006468,GO:0006605,GO:0006623,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016236,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019898,GO:0030242,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034271,GO:0034272,GO:0034613,GO:0035032,GO:0036211,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0061695,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071561,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098796,GO:0140096,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.autophagy of peroxisome
EggNOG OGsKOG1240@1,KOG1240@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Exons1
Model size165
Cds size144
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929815.188116-UTR-H-paniculata_contig27081:2292..23131622929815.188116-UTR-H-paniculata_contig27081:2292..2313Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27081 2293..2313 +
1691481023.5060709-UTR-H-paniculata_contig27081:2292..23131691481023.5060709-UTR-H-paniculata_contig27081:2292..2313Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27081 2293..2313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929815.2030082-CDS-H-paniculata_contig27081:2313..24571622929815.2030082-CDS-H-paniculata_contig27081:2313..2457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27081 2314..2457 +
1691481023.5175793-CDS-H-paniculata_contig27081:2313..24571691481023.5175793-CDS-H-paniculata_contig27081:2313..2457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27081 2314..2457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27081.7413.1prot_H-paniculata_contig27081.7413.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27081 2314..2457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27081.7413.1

>prot_H-paniculata_contig27081.7413.1 ID=prot_H-paniculata_contig27081.7413.1|Name=mRNA_H-paniculata_contig27081.7413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
MVRSISANEGEVVSVHHFNTELGSPLVYGTRKGGVRSWDLRAREVGR*
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mRNA from alignment at H-paniculata_contig27081:2293..2457+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27081.7413.1 ID=mRNA_H-paniculata_contig27081.7413.1|Name=mRNA_H-paniculata_contig27081.7413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig27081:2293..2457+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCGGGTGTGTGGGTCTTCGATGGTGCGGAGCATCTCGGCAAATGAAGG
GGAGGTGGTCAGCGTGCATCACTTCAATACGGAGTTGGGGTCTCCCCTTG
TATACGGCACAAGGAAGGGTGGTGTTCGCTCATGGGACCTTAGAGCTCGC
GAGGTGGGTAGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig27081:2293..2457+

>mRNA_H-paniculata_contig27081.7413.1 ID=mRNA_H-paniculata_contig27081.7413.1|Name=mRNA_H-paniculata_contig27081.7413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig27081:2293..2457+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCGGAGCATCTCGGCAAATGAAGGGGAGGTGGTCAGCGTGCATCA
CTTCAATACGGAGTTGGGGTCTCCCCTTGTATACGGCACAAGGAAGGGTG
GTGTTCGCTCATGGGACCTTAGAGCTCGCGAGGTGGGTAGATGAATGGTG
CGGAGCATCTCGGCAAATGAAGGGGAGGTGGTCAGCGTGCATCACTTCAA
TACGGAGTTGGGGTCTCCCCTTGTATACGGCACAAGGAAGGGTGGTGTTC
GCTCATGGGACCTTAGAGCTCGCGAGGTGGGTAGATGA
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