mRNA_H-paniculata_contig2708.7410.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2708.7410.1
Unique NamemRNA_H-paniculata_contig2708.7410.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2708.7410.1 vs. uniprot
Match: D7FIK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK1_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 1.590e-100
Identity = 199/277 (71.84%), Postives = 220/277 (79.42%), Query Frame = 2 
Query:  572 YVIIDYTVPGLGVVADVLKSFLEWVEDNPAEGAIAFAAVYVFTTVCFIPGSLLTLGAGLVFGRALGTGYGVLVGSVAVLVGATIGAILAFLLGRFVLREQAQGLFNKFTILKAVDRAIESQGLKLVVLLRLSPVVPFSAFNYVMGVTAVHFRDYALGCLGFIPGTVAYVFIGTTASSLLXXXXXXXXXXXXXXXXXXXXXXXX-GAIATIIAVVLISIYAKRALNKVLEEGVEERQQMAEEEAASMEGHHIDGVITSMDDVEAQRGGRPKEVAFPLR 1399
            YVI+DYTVPGLG VAD L SFLEWVEDNP  GA+AFA VYVFTTVCFIPGSLLTLGAGLVFGRALGTG G+LVGS+AVL GAT+G+ILAFLLGRFVL+EQAQGLFNKF +LKAV+RAI+SQGLKLV+LLRLSPVVPFSAFNYVMGVT V FRDYA+GC+GFIPGTVA+VFIGTTAS LL      XXXXXXXXX          G IAT+IAVVLISIYAKRALNKVLEE         E+EA  M     +G + +M+   AQ G RP  V   +R
Sbjct:   57 YVILDYTVPGLGFVADTLTSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEXXXXXXXXXGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEED------RVEQEALEMGLESGNGGMNNMEQS-AQDGARPAVVEHAVR 326
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BLAST of mRNA_H-paniculata_contig2708.7410.1 vs. uniprot
Match: A0A7S2Y1P9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P9_9STRA)

HSP 1 Score: 270 bits (689), Expect = 5.280e-79
Identity = 161/294 (54.76%), Postives = 206/294 (70.07%), Query Frame = 2 
Query:  515 KQQKLIKIGLLALLVIIVIYVIIDYTVPGLGVVADVLKSFLEWVEDNPAEGAIAFAAVYVFTTVCFIPGSLLTLGAGLVFGRALGTGYGVLVGSVAVLVGATIGAILAFLLGRFVLREQAQGLFNKFTILKAVDRAIESQGLKLVVLLRLSPVVPFSAFNYVMGVTAVHFRDYALGCLGFIPGTVAYVFIGTTASSLLXXXXXXXXXXXXXXXXXXXXXXXX-----------GAIATIIAVVLISIYAKRALNKVLEEGVEERQQMAEEEAASMEGHHIDGVITSMDDVEAQR 1363
            K++K+ K+ L  +LV ++IYVI+DY+VP LG V  VL  FL WVEDNP EG  AFA VY+F TV FIPGSLLTLGAGLVFGRALG G GV +GS AV++GA+IGAI+AF+LGR+VL++ AQ LFNKF I++AVD+AIESQGLKL +LLRLSPVVPF+AFNY+MG+TA+  +DY +GCLG IPGTVAYVFIG++AS +                                    GAIAT+IAV LIS YAK+ALN++L E VE  +    ++  + EG  +D   ++ D+VE  +
Sbjct:   20 KKEKIRKLCLGLVLVGLIIYVIVDYSVPSLGNVNIVLSDFLAWVEDNPIEGVFAFACVYMFCTVAFIPGSLLTLGAGLVFGRALGIGRGVALGSFAVILGASIGAIIAFILGRYVLQDTAQVLFNKFKIMRAVDKAIESQGLKLCLLLRLSPVVPFNAFNYIMGLTAISLKDYTIGCLGIIPGTVAYVFIGSSASGIGDMKGNDEEQNDNTKDADGEESSSDNDTVFLIVIIVGAIATVIAVFLISWYAKKALNRILNE-VELEENQDGKDLENCEGK-LDEKKSNKDNVEPSK 311
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BLAST of mRNA_H-paniculata_contig2708.7410.1 vs. uniprot
Match: A0A7S3YEX9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEX9_HETAK)

HSP 1 Score: 241 bits (616), Expect = 9.170e-69
Identity = 152/258 (58.91%), Postives = 189/258 (73.26%), Query Frame = 2 
Query:  515 KQQKLIKIGLLALLVIIVIYVIIDYTVPGLGVVADVLKSFLEWVEDNPAEGAIAFAAVYVFTTVCFIPGSLLTLGAGLVFGRALGTGYGVLVGSVAVLVGATIGAILAFLLGRFVLREQAQGLFNKFTILKAVDRAIESQGLKLVVLLRLSPVVPFSAFNYVMGVTAVHFRDYALGCLGFIPGTVAYVFIGTTASSLLXXXXXXXXXXXXXXXXXXXXXXXX------------GAIATIIAVVLISIYAKRALNKVL 1252
            ++ KLIK GLL+LLV I+IYV++DYT+P LG V  +L SFL WVE++P EG +AFA+VYV TTV FIPGS+LTLGAGLVFGRAL                      +AFLLGR+VL++ AQ LFNKF++LKAVD+AIE++GL+LV+LLRLSPV+PFSAFNYVMG+T V FR Y LGC+G +PGTVAYVFIGT+A+ LL           XXXXXXXXXXXXX            GA AT++AVVLI++ ++RAL +VL
Sbjct:   44 RKNKLIKFGLLSLLVGIIIYVVLDYTLPSLGHVNRILTSFLLWVEEHPGEGVVAFASVYVLTTVLFIPGSILTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXXIAFLLGRYVLQDSAQKLFNKFSVLKAVDKAIENEGLRLVILLRLSPVIPFSAFNYVMGLTRVMFRQYVLGCVGMLPGTVAYVFIGTSAAGLLGDADDGSQESEXXXXXXXXXXXXXXXRLVNIVVLVVGAAATVLAVVLITVASRRALRRVL 301
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BLAST of mRNA_H-paniculata_contig2708.7410.1 vs. uniprot
Match: A0A7S4JVV3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVV3_9STRA)

HSP 1 Score: 211 bits (537), Expect = 3.940e-58
Identity = 116/259 (44.79%), Postives = 170/259 (65.64%), Query Frame = 2 
Query:  509 ATKQQKLIKIGLLALLVIIVIYVIIDYTVPGLGVVADVLKSFLEWVEDNPAEGAIAFAAVYVFTTVCFIPGSLLTLGAGLVFGRALGTGYGVLVGSVAVLVGATIGAILAFLLGRFVLREQAQGLFNKFTILKAVDRAIESQGLKLVVLLRLSPVVPFSAFNYVMGVTAVHFRDYALGCLGFIPGTVAYVFIGTTASSLLXXXXXXXXXXXXXXXXXXXXXXXXGAIATIIAVVLISIYAKRALNKVLEEGVEERQQMA 1285
            A ++ ++ K+ L  +L+  +++VIID T  G   + D +++FL W+E+NP EG   F  VYV  TV F+PG +LTLGAG VF  A GTG G+ VG+++V VGA++G++LAFL+ R++LRE A GL  KF I +A+D+A+E +GLK+++LLRLSPV+PF+A NYV GVTAV F+DY+L     +PGT+ YVF+G +A SL                         G +  I+AV L S YAK+ LNK+L++  E  +++A
Sbjct:   10 ALRRSRIKKLVLALVLIGFIVFVIIDSTTNGY--IKDGIQTFLRWIEENPIEGFFMFMGVYVLATVLFVPGLILTLGAGYVFSNAFGTGLGLFVGTISVFVGASLGSMLAFLISRYILREWAVGLTEKFPIFRAIDQALEEKGLKIIILLRLSPVIPFNALNYVCGVTAVSFKDYSLALFAMLPGTILYVFLGASAQSLATIGSSTDSKALTISTVVV------GVVLGIVAVALSSRYAKKELNKILDQEEEANERIA 260
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BLAST of mRNA_H-paniculata_contig2708.7410.1 vs. uniprot
Match: A0A0G4EY60_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EY60_VITBC)

HSP 1 Score: 197 bits (502), Expect = 1.190e-52
Identity = 125/283 (44.17%), Postives = 167/283 (59.01%), Query Frame = 2 
Query:  542 LLALLVII--VIYVIIDYTVPGLGVVADVLKSFLEWVEDNPAEGAIAFAAVYVFTTVCFIPGSLLTLGAGLVFGRALGTGYGVLVGSVAVLVGATIGAILAFLLGRFVLREQAQGLFNKFTILKAVDRAIESQGLKLVVLLRLSPVVPFSAFNYVMGVTAVHFRDYALGCLGFIPGTVAYVFIGTTASSLLXXXXXXXXXXXXXXXXXXXXXXXXGAIATIIAVVLISIYAKRALNKVLEEGVEERQQMAEEEAASMEGHHIDGV----ITSMDDVEAQRGGR 1372
            LL  LVII  ++Y+IID T      VA+ L  F EWV+DNPA G +A+ AVY+  TV FIPGS+LTLGAG  F  A G G G+  G  AVLVGA +GA LAF  GRF+ +   QGL +KF +++A+D+  E+QGLKL +LLRLSPVVPFSAFNY+MG T   +RDYA+G LG IPGT  YV+IG   +                           G +AT IAV +++ +A++AL ++ E+   E  +   +E     G  +DG     +TS    + Q  G+
Sbjct:   56 LLVFLVIIAIIVYIIIDSTTGQR--VAEGLDIFKEWVQDNPATGILAYMAVYMVCTVAFIPGSILTLGAGFTFVCAFGNGPGMAAGIGAVLVGAFVGAQLAFFCGRFLFKSWVQGLTDKFKVMRAIDKVFETQGLKLNILLRLSPVVPFSAFNYIMGGTRTRYRDYAIGTLGIIPGTALYVYIGAIPA----FAGACSGKAEGSGHWSQWVFLAVGLVATFIAVFIVTWFARKALREITEKEAAEASKADGKEGVETPGPDLDGATVVTVTSSTQQQQQANGQ 332
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BLAST of mRNA_H-paniculata_contig2708.7410.1 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 3.220e-51
Identity = 108/235 (45.96%), Postives = 153/235 (65.11%), Query Frame = 2 
Query:  623 LKSFLEWVEDNPAEGAIAFAAVYVFTTVCFIPGSLLTLGAGLVFGRALGTGYGVLVGSVAVLVGATIGAILAFLLGRFVLREQAQGLFNKFTILKAVDRAIESQGLKLVVLLRLSPVVPFSAFNYVMGVTAVHFRDYALGCLGFIPGTVAYVFIG-TTASSLLXXXXXXXXXXXXXXXXXXXXXXXXGAIATIIAVVLISIYAKRALNKVLEEGVEERQQMAEEEAASMEGHHID 1324
            L++  EW+EDNP  G + FA ++  +T+ F+PG LLT+GAG+ FGRALG G+GVL GSVAVL+GA +  ++AF LGR+VL EQAQ    ++ IL AV+ AIE  G+K+++LLRLSP+VPFS FN++ G+T V  RDY LG +G +PGT+A+V+IG +TA ++                         GA+A ++A+V ++IYA+RAL + L E  E      +EE A  EG   D
Sbjct:   93 LETSFEWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEQEAMNSGEADRTECIIRMATLIVGAVAAVLAIVAVTIYARRALKQALVES-ELDANADKEEKAEHEGSATD 326
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BLAST of mRNA_H-paniculata_contig2708.7410.1 vs. uniprot
Match: W7TSR1_9STRA (SNARE associated Golgi protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSR1_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.120e-50
Identity = 115/264 (43.56%), Postives = 163/264 (61.74%), Query Frame = 2 
Query:  539 GLLALLVIIVIYVIIDYTVPGLGVVADVLKSFLEWVEDNPAEGAIAFAAVYVFTTVCFIPGSLLTLGAGLVFGRALGTGYGVLVGSVAVLVGATIGAILAFLLGRFVLREQAQGLFNKFTILKAVDRAIES-QGLKLVVLLRLSPVVPFSAFNYVMGVTAVHFRDYALGCLGFIPGTVAYVFIGTTASSLLXXXXXXXXXXXXXXXXXXXXXXXXGAIATIIAVVLISIYAKRALNKVLEEGVEERQQMAEEEAASMEGHHIDG 1327
            G+L L +++VI + +DY+  G   VA VL +FLEWV  +P  GA+AFAAVY  + V F+PG+ LTLG G +FG+ALG G G +  S+AV VGA+ GA+ AF LGR++L E AQ   N++TIL+A+D ++   +GLK+V+LLRLSP+VPF+A NY+M VT+V  + Y LG +G +P  VAY F+GTTA  L                         GA+A + AV ++S +A+  L K+ +EG          E A  EG  ++G
Sbjct:   53 GILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGESSVERGVKIAMYVV----GAVALVAAVGVLSRFAREELRKIQDEG----------EGARGEGRDVEG 302
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BLAST of mRNA_H-paniculata_contig2708.7410.1 vs. uniprot
Match: A0A7S2A6Q3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Q3_TRICV)

HSP 1 Score: 191 bits (484), Expect = 2.410e-50
Identity = 102/248 (41.13%), Postives = 160/248 (64.52%), Query Frame = 2 
Query:  515 KQQKLIKIGLLALLVIIVIYVIIDYTVPGLGVVADVLKSFLEWVEDNPAEGAIAFAAVYVFTTVCFIPGSLLTLGAGLVFGRALGTGYGVLVGSVAVLVGATIGAILAFLLGRFVLREQAQGLFNKFTILKAVDRAIESQGLKLVVLLRLSPVVPFSAFNYVMGVTAVHFRDYALGCLGFIPGTVAYVFIGTTASSLLXXXXXXXXXXXXXXXXXXXXXXXXGAIATIIAVVLISIYAKRALNKVLEE 1258
            K+  L KI +  +LV +++++I+D    G   V   ++  L+W+E+NP  G   F AVY   TV F+PGSLLTLG+G VF  + G G+GVL+ ++AV VGAT+GA++AF+LGR++LR+  + L  K+ + +A+D+A+E +GL++++LLRLSP++PF+A NY+ GVT+V F+ YA      +PGT+ +VF+G +A SL+                        G +  +IA+ L S YAK+ LNK+LE+
Sbjct:   40 KRALLNKIIVGLVLVGLIVFIIVDSVTHGF--VKGAIEGLLQWIEENPIRGLFVFMAVYFVATVLFVPGSLLTLGSGFVFAESFGLGFGVLLATLAVFVGATLGALVAFILGRYLLRDWVENLTKKYNVFRAIDKALEEKGLRIMILLRLSPIIPFNALNYICGVTSVSFKHYAWANFAILPGTILFVFLGASAGSLVDSGNGGDTPVVTIATIVV------GVVFGVIAIALTSRYAKKELNKILEQ 279
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BLAST of mRNA_H-paniculata_contig2708.7410.1 vs. uniprot
Match: A0A7S2MII1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MII1_9STRA)

HSP 1 Score: 190 bits (482), Expect = 2.560e-50
Identity = 109/265 (41.13%), Postives = 163/265 (61.51%), Query Frame = 2 
Query:  515 KQQKLIKIGLLALLVIIVIYVIIDYTVPGLGVVADVLKSFLEWVEDNPAEGAIAFAAVYVFTTVCFIPGSLLTLGAGLVFGRALGTGYGVLVGSVAVLVGATIGAILAFLLGRFVLREQAQGLFNKFTILKAVDRAIESQGLKLVVLLRLSPVVPFSAFNYVMGVTAVHFRDYALGCLGFIPGTVAYVFIGTTASSLLXXXXXXXXXXXXXXXXXXXXXXXXGAIATIIAVVLISIYAKRALNKVLEEGVEERQQMAEEEAASME 1309
            ++ +LIKI L  LLV  +IYVI+D+       +   ++SFL W+EDNP EG  AF  VY   T+ F PG +LTLGAG VF  ALG G GV++ + AV VGA+ G++ AFL+GR++LR+   GL  K+ I +AVD A++ +GL++++LLRLSP++PF+A NY++GVT+V FRD+ +  +G +PGT+ YVF+G++A SL                         G++  I+ V + S YA++ L  V+     E  Q+  E+    E
Sbjct:   26 RKARLIKIALGLLLVGFIIYVIVDFATSKH--LRTAMESFLNWIEDNPTEGVFAFMGVYFVATILFAPGLILTLGAGFVFANALGLGLGVVLATTAVFVGASTGSMAAFLIGRYLLRDWVVGLTKKYAIFEAVDVALKEKGLRIMILLRLSPLIPFNALNYIVGVTSVSFRDFTIAMIGILPGTLLYVFLGSSAGSLTDSSSGGDNSAVRILTIVL------GSVFGILGVCVTSYYARKELQNVISRREAEAAQLEVEDIGDKE 282
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BLAST of mRNA_H-paniculata_contig2708.7410.1 vs. uniprot
Match: A0A7S4W131_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W131_9STRA)

HSP 1 Score: 189 bits (481), Expect = 5.800e-50
Identity = 120/296 (40.54%), Postives = 174/296 (58.78%), Query Frame = 2 
Query:  503 PGATKQQKLIKIGLLALLVIIVIYVIIDY--TVPGLGVVADVLKSFLEWVEDNPAEGAIAFAAVYVFTTVCFIPGSLLTLGAGLVFGRALGTGYGVLVGSVAVLVGATIGAILAFLLGRFVLREQAQGLFNKFTILKAVDRAIESQGLKLVVLLRLSPVVPFSAFNYVMGVTAVHFRDYALGCLGFIPGTVAYVFIGTTASSLLXXXXXXXXXXXXXXXXXXXXXXXXGAIATIIAVVLISIYAKRALNKVLEEGVEERQQMAEE--------EAASMEGHHIDGVITSMDDVEAQ 1360
            P  +++  L KIG   +LV  +IYVIID   T   + +VAD    FL+W+EDNPA G  AF  VY+  ++ FIPG +LTLGAG VF  ALG G G+ + +VAV  GA  GA  +FL+GR++LR+    L  K  I +A+D A++ +GL++++LLR+SP+VPF+ FNYV GVT++  RDYA+G +G +PGT+ Y+ +G++A SL+                        G +  ++ V   + YAK+ LNK+L +  E     + E        + AS  G+  D V T  DDVEAQ
Sbjct:   19 PPTSRRAFLFKIGFGLILVGFIIYVIIDLATTKNTMRIVAD----FLDWIEDNPAAGVFAFIGVYIIASIFFIPGLILTLGAGFVFANALGLGVGIFLATVAVFFGAFFGACASFLIGRYLLRDCVGKLTKKRVIFEAIDAALKDKGLRIMILLRVSPLVPFNVFNYVAGVTSISLRDYAIGMIGILPGTLLYILLGSSAGSLVDSSSSGNDSTVRIISIVL------GIVFAVLGVYATTYYAKKELNKILSQRREVNAAASTEGDVDSSNGKGASTIGN--DSVTTDEDDVEAQ 302
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2708.7410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIK1_ECTSI1.590e-10071.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2Y1P9_9STRA5.280e-7954.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YEX9_HETAK9.170e-6958.91Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4JVV3_9STRA3.940e-5844.79Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A0G4EY60_VITBC1.190e-5244.17Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A6H5JID7_9PHAE3.220e-5145.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TSR1_9STRA1.120e-5043.56SNARE associated Golgi protein n=2 Tax=Nannochloro... [more]
A0A7S2A6Q3_TRICV2.410e-5041.13Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2MII1_9STRA2.560e-5041.13Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S4W131_9STRA5.800e-5040.54Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2708contigH-paniculata_contig2708:1772..6711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.2
Seed ortholog evalue5.8e-87
Seed eggNOG ortholog2880.D7FIK1
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Hectar predicted targeting categoryother localisation
EggNOG free text desc.canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsCOG0398@1,KOG3140@2759
EC1.14.13.9
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons5
Model size2993
Cds size1275
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.6753402-UTR-H-paniculata_contig2708:1771..25151622929814.6753402-UTR-H-paniculata_contig2708:1771..2515Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2708 1772..2515 -
1691481023.2456005-UTR-H-paniculata_contig2708:1771..25151691481023.2456005-UTR-H-paniculata_contig2708:1771..2515Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2708 1772..2515 -
1622929814.6979225-UTR-H-paniculata_contig2708:2541..33821622929814.6979225-UTR-H-paniculata_contig2708:2541..3382Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2708 2542..3382 -
1691481023.2597172-UTR-H-paniculata_contig2708:2541..33821691481023.2597172-UTR-H-paniculata_contig2708:2541..3382Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2708 2542..3382 -
1622929814.766127-UTR-H-paniculata_contig2708:6578..67111622929814.766127-UTR-H-paniculata_contig2708:6578..6711Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2708 6579..6711 -
1691481023.3017461-UTR-H-paniculata_contig2708:6578..67111691481023.3017461-UTR-H-paniculata_contig2708:6578..6711Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2708 6579..6711 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.7113082-CDS-H-paniculata_contig2708:3382..37881622929814.7113082-CDS-H-paniculata_contig2708:3382..3788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2708 3383..3788 -
1691481023.270979-CDS-H-paniculata_contig2708:3382..37881691481023.270979-CDS-H-paniculata_contig2708:3382..3788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2708 3383..3788 -
1622929814.722244-CDS-H-paniculata_contig2708:4367..45611622929814.722244-CDS-H-paniculata_contig2708:4367..4561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2708 4368..4561 -
1691481023.2786708-CDS-H-paniculata_contig2708:4367..45611691481023.2786708-CDS-H-paniculata_contig2708:4367..4561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2708 4368..4561 -
1622929814.7348876-CDS-H-paniculata_contig2708:5320..55361622929814.7348876-CDS-H-paniculata_contig2708:5320..5536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2708 5321..5536 -
1691481023.2862234-CDS-H-paniculata_contig2708:5320..55361691481023.2862234-CDS-H-paniculata_contig2708:5320..5536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2708 5321..5536 -
1622929814.7486908-CDS-H-paniculata_contig2708:6119..65781622929814.7486908-CDS-H-paniculata_contig2708:6119..6578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2708 6120..6578 -
1691481023.2939804-CDS-H-paniculata_contig2708:6119..65781691481023.2939804-CDS-H-paniculata_contig2708:6119..6578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2708 6120..6578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2708.7410.1prot_H-paniculata_contig2708.7410.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2708 3383..6578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2708.7410.1

>prot_H-paniculata_contig2708.7410.1 ID=prot_H-paniculata_contig2708.7410.1|Name=mRNA_H-paniculata_contig2708.7410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=425bp
MHTAGTTRQPPPLGYNSSSTRETAQLHSPTTSSSPARPNDQLLPLLTNQF
GGPSVNYTPTTPATAALLLAASSQPPGKEGSNNNNNNTNSVMDFESNIPT
SNSEARMISSNAIEMDDHEEANNPGATKQQKLIKIGLLALLVIIVIYVII
DYTVPGLGVVADVLKSFLEWVEDNPAEGAIAFAAVYVFTTVCFIPGSLLT
LGAGLVFGRALGTGYGVLVGSVAVLVGATIGAILAFLLGRFVLREQAQGL
FNKFTILKAVDRAIESQGLKLVVLLRLSPVVPFSAFNYVMGVTAVHFRDY
ALGCLGFIPGTVAYVFIGTTASSLLGDDDDNEEDDDGSSARVQLIVIIVG
AIATIIAVVLISIYAKRALNKVLEEGVEERQQMAEEEAASMEGHHIDGVI
TSMDDVEAQRGGRPKEVAFPLREH*
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mRNA from alignment at H-paniculata_contig2708:1772..6711-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2708.7410.1 ID=mRNA_H-paniculata_contig2708.7410.1|Name=mRNA_H-paniculata_contig2708.7410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4940bp|location=Sequence derived from alignment at H-paniculata_contig2708:1772..6711- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGTATATCGGTCAAAAACCATCAGGTTGACCAGTACCACACACCACAA
CGTGCCGAGGATCGGTTCGATGCGGAAAAGCCACCCGTCCGAGCAAGACA
GGCAGTCGTTTGTGATGAATTTGTGACAAGCTAATGCACACCGCAGGCAC
AACTCGACAGCCACCGCCCCTAGGGTACAACAGCAGCAGCACAAGAGAGA
CAGCACAACTTCATTCCCCAACAACTTCTTCCTCACCAGCAAGACCGAAC
GACCAGCTGTTGCCTCTCTTGACAAACCAGTTCGGTGGACCTTCCGTCAA
CTACACCCCTACCACACCTGCTACAGCAGCACTACTGCTAGCCGCTTCGT
CGCAACCCCCTGGCAAGGAGGGCAGCAACAACAACAACAACAACACCAAC
AGCGTTATGGATTTCGAGAGCAACATCCCGACTTCCAATAGTGAAGCAAG
GATGATAAGCTCGAATGCCATCGAGATGGACGACCACGAGGAGGCGAACA
ATCCAGGGGCCACCAAGCAGCAGAAGTTGATCAAGATTGGGCTTTTGGCT
CTGTTGGTGATCATTGTCATCTACGTCATTATAGACTACACGGTAAGTTT
GTGTCGGCTTGTAATCTGCAATTACGCGAGGTCGTGTATACGTGTATGCA
GACAGTTGAGACTTTCGCTCTTTGCTCGGACCGTAGTGCTGTCGGTGTAT
GCTCCTGAGTTCATTTAAAGCCGGCGTCTTTGTCGGCATCGTCGTCGATG
TTCTGGAGAGGGGCTACTGTACCATACAGAGTCTCGTGTGCTGTTGTGTT
GTGGGGGATATTTATATTAACTTCCTGGATTATGCGTCCATTGCCTGTTG
GTTCCCGAAGTAGCACGTGCCGTTGCCGTCTAGAGGGGTAAAACTATACC
ACGCCTGCATCGTTGGAGTATTTCTCAATGCAATCCCATCTACTGCGTTT
TCTAGGCAGAAGAACGTGGAGTCGATAGCCGGAATGTGACGAGATGGAAG
AGTTGCACAAGTGATTTCATGCCATATTGGTTGACTGGTTCTCGTTTGAT
ACTGGCACCCACGACGACCATTTACCATAAAACAAACCCACTAGTGGGTA
TAAAGTACAGCCAGAGGGGAAGTACTCCCTCTCGTAAATACTCACTCCCT
TTCCTTTCAAATTTCACTCCTATAGGTGCCAGGGCTAGGCGTCGTTGCAG
ACGTACTGAAGAGCTTCCTCGAGTGGGTCGAGGATAACCCTGCGGAGGGG
GCTATTGCGTTCGCTGCTGTGTACGTCTTCACTACAGTCTGCTTTATCCC
TGGCTCTCTTCTTACACTCGGCGCCGGTCTCGTGTTCGGACGCGCGTTAG
GCACTGGTTATGGTGTGCTGGTTGGGTCGGTTGCTGTGCTGGTGAGCATA
TCATACATATCTACTCCGTGTTCAGTTCTTTCATTTTGTTGAGGAGACAT
GTGATCCCCCGCTGAGATAATTTATTTGACGGACTGAATTCAAGTAGTTT
GACACCACGCTGAGATCGAGTATTATATACCATTATTAGATATTGTTCGG
TAGTGGACGCTGCAGGACTTGTATTCCAGTGGTGCTTGATCTGACGCTTC
GCCCTGAAGTTCTTGGCAGGAAATTAAGTAAGTATTGAATCAATATTGAG
ACCAGTAGGTTTTGACACCACCTTGAATCCAGTAGTTACTGACATGGCTT
GACTGATGTCGTGCTTGACATTTCAATATTTTCGAGAGAGGCGTGAAATA
CTAGTACGATCATACTCGCAGTTGATGAGGTATTATCGGCAAGTCGGAAT
TTTGTGAAGCGGAGGTAGGGAAGAAGGTAATCCAACTTGTGCGGTGTGGT
CACAAGAGGTGAAGAGGTTTCAGTAGCAACCTGGCACGCCCCCCCCTGAT
GCAATGGGTTAAGTTTGCATAACTCGTGGCTAGCTATATGATATAAAACG
CATGCATGTGCTATTTATGTGGCTGTATCCATGAAAACATCGCTGCTGAT
GAGAGTAAGAGAACATCAGGTCTAGATGGCTTTGTGATGGAGGATACCGC
GGGTCATCAGATATACAAAGGTCAAGGGATCAGTAGGTGACTTAGAAATC
AGCCAACTGACGTACGCATACCCCCAATTGACACCATGATGTGCACGCAG
GTGGGCGCTACGATAGGGGCCATCCTGGCCTTCTTGCTAGGGCGGTTTGT
TTTGAGGGAGCAGGCGCAGGGCTTGTTCAATAAGTTCACGATTTTAAAGG
CCGTAGACAGGGCAATCGAGTCTCAGGGGCTCAAGCTTGTGGTTCTCCTG
CGTCTGTCACCCGTTGTACCTTTCAGCGCATTCAATTACGTCATGTGAGT
TTCGGTGGTGGTTGTTTCAGTATTAGCGAAAGAAAATCTTGAACGATGAA
TGAAATATACAGAGGGCAAGATCTGGCTGATGTCCCGTGTGCTATTTCAT
ATTTTCGTCTTCGTTGTATTCCCTTCTTGTTCGTATAATTCGTGCGGGAT
CGCCCATGTTGTGTGCTTTTTTCTCAAGTGTGTTCCCTGCGTTGTACTCA
CGACGGACACCGTCCGCGTGAATTCTGGAGCAGCACAGGATTTCCTGTTG
CATGAGTAAAGGCCTGCTCGTCCGCCAGTTCCGTTTCTGGCACGACAGCT
CTGCACCACCCCACACTGACTCGATAGTTTCCAGGAGCACGTTCTACTTT
GGCGGGAGGTTACCGAGGCCGTGGTTACTGTTGTACTCGAATATCTTTTT
TGGTGGTTATTGCGTGTTGTAAACAGATATTCTCGTATATGATTGCATGC
CCCACCACTTCCATAATTGGCCAATTCCTGTCCTGGCACGCGACCCCATT
GGACCTATTTGGACCTCACACCTGTCTGGTTTGTGTTCGCTGCCCACTCT
TTCATTTGTCGCGGATACCATAGGGGTGTCACTGCCGTACATTTCCGCGA
TTACGCGCTCGGGTGCCTCGGGTTTATCCCTGGGACCGTAGCGTACGTTT
TCATCGGCACAACAGCCTCTAGCCTATTGGGGGACGACGATGACAACGAA
GAGGACGATGATGGGAGCAGCGCACGGGTCCAGTTGATCGTAATCATCGT
GGGGGCGATTGCCACGATTATCGCGGTAGTGCTCATCAGCATCTACGCGA
AGCGGGCATTGAATAAAGTATTGGAGGAGGGGGTAGAGGAAAGGCAGCAG
ATGGCAGAGGAGGAAGCAGCATCCATGGAGGGCCATCATATTGATGGTGT
CATTACGTCTATGGATGATGTGGAGGCACAAAGGGGCGGTCGACCGAAAG
AAGTGGCGTTTCCTCTACGTGAGCACTAAGGGAAGATCCGTATTGACGAA
TCGCTCAATCCTTGATGGGCTCACACTTTCAAAGTATGTTTTCTGGTATT
TGCATTTGCAGCGTATTTTTTCATTACAATAAGGCGTTATATACTGAACA
AGGGGAATAGAAGTGATTATTGCGTACGTTGATTTCTCCCCTCTGAGAAG
AGCAGTGGTTGGCTCGTCGGCGTATATATATATATATATATATATATAAA
TATACAGCCTTCGGCAGAAGAGAACAGTAGTTGACGAGTGCAGGTGATGC
TCAGGCTTCTTGTAAAAAGTACACCCTCGGGACAAACACGAATGGAGCAT
TCGCGACTATCTTGGACTATCATTTGTAGTCTTGGGTAAAGACGAATTTA
TTCATTTACAAGTCCATGAAAGGTCACTCTACAGATAGTCACGAGGTGGT
CGTGAACCTGGCGAACACTTACACGTGCAGATCCTGTTTATTTTCTGGGT
GGTAATGTACAGATTGAGTTCTCTATCTGCCCGAGCTTTTCGATGCTCCA
TGGTATATCGAGTGCACTGCATATTATTCGCGTCACATGGTCATCTTCCC
CTAGTCAAACAGATGCAGTATTCATTCCAGATTTCTCGTATTTGTTCGTG
TCTTGTATTCGTATGTGTCCGGGGAGCGAAAAGAGTTGCGCATGATGCAG
ACGCGGTTCATCCCTTCTTGATTCGACGTCTGTGTCCCGTTGTTTTGTTT
AGCTCAAGTCGATGTTCGACGGGAAGTATTTTGGCGCACTGTGGGGTGCC
TTGTGGATCCCGATTCTACAGTGACTGTAATACATCCAATGTAAAGGAAA
GGTGAAAATCGCTTTGTGGTATTGGAGTAGTTGATATATATATATATATA
TATATATATATATGAGTCCTTTCAATTGATCTGGACCCTTCAATTCAAAG
GCTGCAAGTTGTGTAAGGCCATGATTTGTGCCTTGTATCTTCACGCGGTG
CGGGCAGCGATACCGGTCTCTCGTCAACGCTTGATTTTGATGAAAAGCAA
TCGTGAGGATTTAGAGAATTGAGCGCACACTATAGCGATGTGATGGGATT
TGGAGTCTTACCTGTTTGGCACACTGTTGGGTTTCTTCGGCCTGGACATA
CCACAACTACTTTGCAGAGACGAAGAAATTAGAATTTCTGCATTTTGTAG
TGTGGTTTTTGTTGGAAACAACCAATATTTTGCCTTGTAGTTTTAGCTTT
GTATCCTTGTGATATGTTTACATTGTGCATGAGCAACCATCTCAACCAAT
TTAGAGTTGAAGCCAAATAAATGGCCGCTCCGCAATGTCGGTTATGTTGC
ATGAGGCAGCGTTCTCGGCGAATAACTGTTTGTTTTTTGTTCCTCGGATA
TTTCTTGTTTCGCGATTGTCGCATTTGGCGGATCATATTGGGTTCATCCC
TCGTTGTTATGTTGTTTCCGATGTAGCGGCATGGTGCCCGCACGTATCTC
ATAATACGACACTTGTTTGCCTCGTTTTCCGGCCAGAATACTCGAACTAA
GTAGTTGTATTCTGGTTTCGTTGTAATAATTCTAGTGTCATCACCTATTT
TGTTACAATAGCGAAGGCTGCACTAACCAGGTTGACCAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2708:1772..6711-

>mRNA_H-paniculata_contig2708.7410.1 ID=mRNA_H-paniculata_contig2708.7410.1|Name=mRNA_H-paniculata_contig2708.7410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2550bp|location=Sequence derived from alignment at H-paniculata_contig2708:1772..6711- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACACCGCAGGCACAACTCGACAGCCACCGCCCCTAGGGTACAACAG
CAGCAGCACAAGAGAGACAGCACAACTTCATTCCCCAACAACTTCTTCCT
CACCAGCAAGACCGAACGACCAGCTGTTGCCTCTCTTGACAAACCAGTTC
GGTGGACCTTCCGTCAACTACACCCCTACCACACCTGCTACAGCAGCACT
ACTGCTAGCCGCTTCGTCGCAACCCCCTGGCAAGGAGGGCAGCAACAACA
ACAACAACAACACCAACAGCGTTATGGATTTCGAGAGCAACATCCCGACT
TCCAATAGTGAAGCAAGGATGATAAGCTCGAATGCCATCGAGATGGACGA
CCACGAGGAGGCGAACAATCCAGGGGCCACCAAGCAGCAGAAGTTGATCA
AGATTGGGCTTTTGGCTCTGTTGGTGATCATTGTCATCTACGTCATTATA
GACTACACGATGCACACCGCAGGCACAACTCGACAGCCACCGCCCCTAGG
GTACAACAGCAGCAGCACAAGAGAGACAGCACAACTTCATTCCCCAACAA
CTTCTTCCTCACCAGCAAGACCGAACGACCAGCTGTTGCCTCTCTTGACA
AACCAGTTCGGTGGACCTTCCGTCAACTACACCCCTACCACACCTGCTAC
AGCAGCACTACTGCTAGCCGCTTCGTCGCAACCCCCTGGCAAGGAGGGCA
GCAACAACAACAACAACAACACCAACAGCGTTATGGATTTCGAGAGCAAC
ATCCCGACTTCCAATAGTGAAGCAAGGATGATAAGCTCGAATGCCATCGA
GATGGACGACCACGAGGAGGCGAACAATCCAGGGGCCACCAAGCAGCAGA
AGTTGATCAAGATTGGGCTTTTGGCTCTGTTGGTGATCATTGTCATCTAC
GTCATTATAGACTACACGGTGCCAGGGCTAGGCGTCGTTGCAGACGTACT
GAAGAGCTTCCTCGAGTGGGTCGAGGATAACCCTGCGGAGGGGGCTATTG
CGTTCGCTGCTGTGTACGTCTTCACTACAGTCTGCTTTATCCCTGGCTCT
CTTCTTACACTCGGCGCCGGTCTCGTGTTCGGACGCGCGTTAGGCACTGG
TTATGGTGTGCTGGTTGGGTCGGTTGCTGTGCTGGTGCCAGGGCTAGGCG
TCGTTGCAGACGTACTGAAGAGCTTCCTCGAGTGGGTCGAGGATAACCCT
GCGGAGGGGGCTATTGCGTTCGCTGCTGTGTACGTCTTCACTACAGTCTG
CTTTATCCCTGGCTCTCTTCTTACACTCGGCGCCGGTCTCGTGTTCGGAC
GCGCGTTAGGCACTGGTTATGGTGTGCTGGTTGGGTCGGTTGCTGTGCTG
GTGGGCGCTACGATAGGGGCCATCCTGGCCTTCTTGCTAGGGCGGTTTGT
TTTGAGGGAGCAGGCGCAGGGCTTGTTCAATAAGTTCACGATTTTAAAGG
CCGTAGACAGGGCAATCGAGTCTCAGGGGCTCAAGCTTGTGGTTCTCCTG
CGTCTGTCACCCGTTGTACCTTTCAGCGCATTCAATTACGTCATGTGGGC
GCTACGATAGGGGCCATCCTGGCCTTCTTGCTAGGGCGGTTTGTTTTGAG
GGAGCAGGCGCAGGGCTTGTTCAATAAGTTCACGATTTTAAAGGCCGTAG
ACAGGGCAATCGAGTCTCAGGGGCTCAAGCTTGTGGTTCTCCTGCGTCTG
TCACCCGTTGTACCTTTCAGCGCATTCAATTACGTCATGGGTGTCACTGC
CGTACATTTCCGCGATTACGCGCTCGGGTGCCTCGGGTTTATCCCTGGGA
CCGTAGCGTACGTTTTCATCGGCACAACAGCCTCTAGCCTATTGGGGGAC
GACGATGACAACGAAGAGGACGATGATGGGAGCAGCGCACGGGTCCAGTT
GATCGTAATCATCGTGGGGGCGATTGCCACGATTATCGCGGTAGTGCTCA
TCAGCATCTACGCGAAGCGGGCATTGAATAAAGTATTGGAGGAGGGGGTA
GAGGAAAGGCAGCAGATGGCAGAGGAGGAAGCAGCATCCATGGAGGGCCA
TCATATTGATGGTGTCATTACGTCTATGGATGATGTGGAGGCACAAAGGG
GCGGTCGACCGAAAGAAGTGGCGTTTCCTCTACGTGAGCACTAAGGGTGT
CACTGCCGTACATTTCCGCGATTACGCGCTCGGGTGCCTCGGGTTTATCC
CTGGGACCGTAGCGTACGTTTTCATCGGCACAACAGCCTCTAGCCTATTG
GGGGACGACGATGACAACGAAGAGGACGATGATGGGAGCAGCGCACGGGT
CCAGTTGATCGTAATCATCGTGGGGGCGATTGCCACGATTATCGCGGTAG
TGCTCATCAGCATCTACGCGAAGCGGGCATTGAATAAAGTATTGGAGGAG
GGGGTAGAGGAAAGGCAGCAGATGGCAGAGGAGGAAGCAGCATCCATGGA
GGGCCATCATATTGATGGTGTCATTACGTCTATGGATGATGTGGAGGCAC
AAAGGGGCGGTCGACCGAAAGAAGTGGCGTTTCCTCTACGTGAGCACTAA
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