mRNA_H-paniculata_contig27073.7408.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 2.310e-19 Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 3
Query: 69 KVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVGSIHVTHI 311
+VL TLQ LG+GN FDDI Q+SLMS+ A + FH F K FA+E F E I LPTG M YD +G T A+GS VTHI
Sbjct: 3 QVLTTLQTLGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHI 83
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5JP98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP98_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.100e-18 Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 3
Query: 39 GVGKEVHVELKVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVGSIHVTHI 311
G + + VE+KVLA L+ LG+GN FDD+ +++ M E+T FH F +RFA E F W+++P L MK YD VG T A+GS+ TH+
Sbjct: 123 GTRRCIPVEIKVLAVLRILGRGNYFDDVSEVTGMGEATVNHLFHKFTERFAREFFPVWVRMPNEVELKEIMKTYDEVGMTGAMGSMDGTHL 213
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 1.790e-17 Identity = 44/81 (54.32%), Postives = 52/81 (64.20%), Query Frame = 3
Query: 69 KVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVGSIHVTHI 311
+VL LQ LG+GN FDDI Q+SLMS+ A + FH F K FA+E F E I LPTG M YD +G T A+GS VTHI
Sbjct: 3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHI 83
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 2.140e-17 Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = 3
Query: 54 VHVELKVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVGSIHVTHI 311
V VELKVLA LQ L +GN F DI +S +S T S FH F K FA E + E++ LPTG+ L M+ YD +GF AVGS VTHI
Sbjct: 169 VPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHI 254
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 2.660e-17 Identity = 44/81 (54.32%), Postives = 52/81 (64.20%), Query Frame = 3
Query: 69 KVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVGSIHVTHI 311
K+L LQ LG+GN FDDI Q+SLMS+ A + FH F K FA+E F E I LPTG M YD +G T A+GS VTHI
Sbjct: 250 KILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHI 330
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 6.070e-16 Identity = 47/87 (54.02%), Postives = 55/87 (63.22%), Query Frame = 3
Query: 60 VELKVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDA--LTATMKAYDAVGFTEAVGSIHVTHIA 314
VE KVLA L LG+GN F I Q+S MS T Q FH F + FA E + E I LPT ++ L MK YD +GFT AVGS+ VTHIA
Sbjct: 82 VEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIA 168
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.690e-15 Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = 3
Query: 54 VHVELKVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVGSIHVTHI 311
+ V+LKVLA LQ L +GN F DI +S +S TA + FH F + FA E + E I LPTGD M YD +GF+ A GS VTHI
Sbjct: 153 IPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHI 238
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 2.010e-13 Identity = 43/86 (50.00%), Postives = 51/86 (59.30%), Query Frame = 3
Query: 54 VHVELKVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVGSIHVTHI 311
+ +ELKVL GKGN FDD+ Q+S MSES AQ+ FH F + A E F E I LPTG L M + +G T A GS VTHI
Sbjct: 133 IPLELKVL------GKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHI 212
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 1.590e-12 Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 3
Query: 54 VHVELKVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVGSIHVTHI 311
+ VELKVL G+GN FDDI Q+S +SE T Q FH F +RFA E F + +K P G L ++ Y VGF GS+ THI
Sbjct: 133 IPVELKVL------GRGNFFDDIPQLSFISEQTIQRVFHEFTQRFALEFFPKHVKFPQGAHLEEILREYKDVGFGGCAGSMDCTHI 212
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Match: A0A6H5KTA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA5_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 1.510e-10 Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 3
Query: 69 KVLATLQNLGKGNSFDDIGQISLMSESTAQSAFHTFGKRFAEERFHEWIKLPTG 230
+VL LQ LG+GN FDDI Q+SLMS+ A + FH F K FA+E F E I LPTG
Sbjct: 3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTG 56 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27073.7408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig27073.7408.1 >prot_H-paniculata_contig27073.7408.1 ID=prot_H-paniculata_contig27073.7408.1|Name=mRNA_H-paniculata_contig27073.7408.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp MSESTAQSAFHTFGKRFAEERFHEWIKLPTGDALTATMKAYDAVGFTEAVback to top mRNA from alignment at H-paniculata_contig27073:1089..2252+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig27073.7408.1 ID=mRNA_H-paniculata_contig27073.7408.1|Name=mRNA_H-paniculata_contig27073.7408.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig27073:1089..2252+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig27073:1089..2252+ >mRNA_H-paniculata_contig27073.7408.1 ID=mRNA_H-paniculata_contig27073.7408.1|Name=mRNA_H-paniculata_contig27073.7408.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig27073:1089..2252+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |