mRNA_H-paniculata_contig27065.7406.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27065.7406.1
Unique NamemRNA_H-paniculata_contig27065.7406.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27065.7406.1 vs. uniprot
Match: D8LLB6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB6_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 3.990e-18
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 PILTKMTDEQEADKVIWTPSSMIERLGHEIDNEDSIYYWCAK 126
            PIL KMTDEQEADKV+WTPS+MIERLG EIDNE+SIYYWCAK
Sbjct:  196 PILNKMTDEQEADKVVWTPSTMIERLGREIDNEESIYYWCAK 237
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BLAST of mRNA_H-paniculata_contig27065.7406.1 vs. uniprot
Match: A0A812WM17_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WM17_SYMMI)

HSP 1 Score: 68.2 bits (165), Expect = 2.150e-12
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 PILTKMTDEQEADKVIWTPSSMIERLGHEIDNEDSIYYWCAK 126
            PIL  MT+EQ AD V WTPS +I RLG EIDNEDS+YYWC K
Sbjct:   79 PILEAMTNEQVADNVRWTPSQIIRRLGQEIDNEDSVYYWCYK 120
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BLAST of mRNA_H-paniculata_contig27065.7406.1 vs. uniprot
Match: A0A1E4TDU7_9ASCO (Deoxyhypusine synthase n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TDU7_9ASCO)

HSP 1 Score: 67.8 bits (164), Expect = 4.960e-12
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 PILTKMTDEQEADKVIWTPSSMIERLGHEIDNEDSIYYWCAK 126
            PI  KM +EQE++ V WTPS++IERLG EIDNEDS+YYW AK
Sbjct:  167 PIFDKMLEEQESNGVSWTPSTLIERLGREIDNEDSVYYWAAK 208
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BLAST of mRNA_H-paniculata_contig27065.7406.1 vs. uniprot
Match: A0A1X2IPZ5_9FUNG (Deoxyhypusine synthase n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IPZ5_9FUNG)

HSP 1 Score: 67.8 bits (164), Expect = 5.130e-12
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 PILTKMTDEQEADKVIWTPSSMIERLGHEIDNEDSIYYWCAK 126
            PIL KM +EQ++  VIWTPSSMI+RLG EI++E SIYYWCAK
Sbjct:  187 PILDKMLEEQKSKGVIWTPSSMIKRLGEEINDESSIYYWCAK 228
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BLAST of mRNA_H-paniculata_contig27065.7406.1 vs. uniprot
Match: A0A068RXI3_9FUNG (Deoxyhypusine synthase n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RXI3_9FUNG)

HSP 1 Score: 67.8 bits (164), Expect = 5.270e-12
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 PILTKMTDEQEADKVIWTPSSMIERLGHEIDNEDSIYYWCAK 126
            PIL KM +EQ+   VIWTPSSMI RLG EI++E SIYYWCAK
Sbjct:  187 PILDKMLEEQKTKNVIWTPSSMIRRLGEEINDESSIYYWCAK 228
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BLAST of mRNA_H-paniculata_contig27065.7406.1 vs. uniprot
Match: A0A0R3SEL0_HYMDI (Uncharacterized protein n=1 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A0R3SEL0_HYMDI)

HSP 1 Score: 67.8 bits (164), Expect = 5.740e-12
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 PILTKMTDEQEADKVIWTPSSMIERLGHEIDNEDSIYYWCAKV 129
            PI  KM DEQ+ D V WTPS +I RLG EIDN DSIYYWC KV
Sbjct:  556 PIFDKMLDEQKKDNVSWTPSKIINRLGKEIDNPDSIYYWCYKV 598
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BLAST of mRNA_H-paniculata_contig27065.7406.1 vs. uniprot
Match: A0A1E3HH41_9TREE (Deoxyhypusine synthase n=2 Tax=Cryptococcus depauperatus TaxID=5208 RepID=A0A1E3HH41_9TREE)

HSP 1 Score: 67.0 bits (162), Expect = 9.250e-12
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 PILTKMTDEQEADKVIWTPSSMIERLGHEIDNEDSIYYWCAK 126
            PIL KM +EQE D V W+PSS+I RLG EIDNE+S+YYWC K
Sbjct:  167 PILDKMVEEQENDDVRWSPSSIIRRLGKEIDNEESVYYWCYK 208
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BLAST of mRNA_H-paniculata_contig27065.7406.1 vs. uniprot
Match: A0A1X2G4C2_9FUNG (Deoxyhypusine synthase n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G4C2_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 9.780e-12
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 PILTKMTDEQEADKVIWTPSSMIERLGHEIDNEDSIYYWCAK 126
            P+L KM DEQ++   IWTPSSMI+RLG EI++E SIYYWCAK
Sbjct:  189 PLLDKMLDEQKSKGTIWTPSSMIKRLGEEINDESSIYYWCAK 230
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BLAST of mRNA_H-paniculata_contig27065.7406.1 vs. uniprot
Match: A0A564YGE2_HYMDI (Uncharacterized protein n=1 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A564YGE2_HYMDI)

HSP 1 Score: 65.9 bits (159), Expect = 1.470e-11
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 PILTKMTDEQEADKVIWTPSSMIERLGHEIDNEDSIYYWCAK 126
            PI  KM DEQ+ D V WTPS +I RLG EIDN DSIYYWC K
Sbjct:   77 PIFDKMLDEQKKDNVSWTPSKIINRLGKEIDNPDSIYYWCYK 118
[Close]
BLAST of mRNA_H-paniculata_contig27065.7406.1 vs. uniprot
Match: A0A167LFB6_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167LFB6_PHYB8)

HSP 1 Score: 66.2 bits (160), Expect = 1.840e-11
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 PILTKMTDEQEADKVIWTPSSMIERLGHEIDNEDSIYYWCAK 126
            PIL KM DEQ+    IWTPSSMI++LG EI++E SIYYWCAK
Sbjct:  187 PILDKMLDEQKTKGTIWTPSSMIKKLGEEINDESSIYYWCAK 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27065.7406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLB6_ECTSI3.990e-1888.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A812WM17_SYMMI2.150e-1271.43Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A1E4TDU7_9ASCO4.960e-1269.05Deoxyhypusine synthase n=1 Tax=Tortispora caseinol... [more]
A0A1X2IPZ5_9FUNG5.130e-1271.43Deoxyhypusine synthase n=1 Tax=Absidia repens TaxI... [more]
A0A068RXI3_9FUNG5.270e-1271.43Deoxyhypusine synthase n=2 Tax=Lichtheimia TaxID=6... [more]
A0A0R3SEL0_HYMDI5.740e-1269.77Uncharacterized protein n=1 Tax=Hymenolepis diminu... [more]
A0A1E3HH41_9TREE9.250e-1269.05Deoxyhypusine synthase n=2 Tax=Cryptococcus depaup... [more]
A0A1X2G4C2_9FUNG9.780e-1269.05Deoxyhypusine synthase n=1 Tax=Hesseltinella vesic... [more]
A0A564YGE2_HYMDI1.470e-1169.05Uncharacterized protein n=1 Tax=Hymenolepis diminu... [more]
A0A167LFB6_PHYB81.840e-1169.05Uncharacterized protein n=1 Tax=Phycomyces blakesl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27065contigH-paniculata_contig27065:411..560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog2880.D8LLB6
KEGG koko:K00809
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006464,GO:0006518,GO:0006576,GO:0006595,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0008216,GO:0008284,GO:0008612,GO:0009058,GO:0009059,GO:0009308,GO:0009405,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016740,GO:0016765,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0019899,GO:0022607,GO:0030234,GO:0032991,GO:0034038,GO:0034641,GO:0034645,GO:0036211,GO:0042127,GO:0042802,GO:0042803,GO:0043043,GO:0043085,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046983,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051094,GO:0051259,GO:0051262,GO:0051290,GO:0051291,GO:0051604,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0090342,GO:0090343,GO:0097164,GO:0098772,GO:1901564,GO:1901566,GO:1901576,GO:1902494
EggNOG free text desc.peptidyl-lysine modification to peptidyl-hypusine
EggNOG OGsCOG1899@1,KOG2924@2759
EC2.5.1.46
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size150
Cds size135
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.3920183-CDS-H-paniculata_contig27065:410..5451622929814.3920183-CDS-H-paniculata_contig27065:410..545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27065 411..545 -
1691481023.139075-CDS-H-paniculata_contig27065:410..5451691481023.139075-CDS-H-paniculata_contig27065:410..545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27065 411..545 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.4050336-UTR-H-paniculata_contig27065:545..5601622929814.4050336-UTR-H-paniculata_contig27065:545..560Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27065 546..560 -
1691481023.151066-UTR-H-paniculata_contig27065:545..5601691481023.151066-UTR-H-paniculata_contig27065:545..560Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27065 546..560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27065.7406.1prot_H-paniculata_contig27065.7406.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27065 411..545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27065.7406.1

>prot_H-paniculata_contig27065.7406.1 ID=prot_H-paniculata_contig27065.7406.1|Name=mRNA_H-paniculata_contig27065.7406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MTDEQEADKVIWTPSSMIERLGHEIDNEDSIYYWCAKVCNKYLY*
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mRNA from alignment at H-paniculata_contig27065:411..560-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27065.7406.1 ID=mRNA_H-paniculata_contig27065.7406.1|Name=mRNA_H-paniculata_contig27065.7406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig27065:411..560- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTATCCTCACTAAGATGACTGATGAGCAAGAAGCAGACAAGGTCATATG
GACGCCGTCTTCAATGATCGAGCGCCTCGGCCACGAGATAGACAACGAGG
ACTCCATCTACTACTGGTGTGCCAAGGTATGCAATAAATACCTTTATTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig27065:411..560-

>mRNA_H-paniculata_contig27065.7406.1 ID=mRNA_H-paniculata_contig27065.7406.1|Name=mRNA_H-paniculata_contig27065.7406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig27065:411..560- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGATGAGCAAGAAGCAGACAAGGTCATATGGACGCCGTCTTCAAT
GATCGAGCGCCTCGGCCACGAGATAGACAACGAGGACTCCATCTACTACT
GGTGTGCCAAGGTATGCAATAAATACCTTTATTAGATGACTGATGAGCAA
GAAGCAGACAAGGTCATATGGACGCCGTCTTCAATGATCGAGCGCCTCGG
CCACGAGATAGACAACGAGGACTCCATCTACTACTGGTGTGCCAAGGTAT
GCAATAAATACCTTTATTAG
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