mRNA_H-paniculata_contig27057.7402.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27057.7402.1
Unique NamemRNA_H-paniculata_contig27057.7402.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27057.7402.1 vs. uniprot
Match: D8LMR1_ECTSI (Ubiquinone biosynthesis O-methyltransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR1_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.070e-30
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    4 QSFALAIIGAEYVAGLVPVGTHEWRKFVRPEDLASMLAERGFSTEGVHSCGLIYNPLSGGWCEKWGDVDVNYIMTAVR 237
            +SFALAI+GAEY+AG+VPVGTH+WRKFV PEDLA+ML   GF  E V +CGL+YNP+SG W E  GD+DVNYI+TA+R
Sbjct:  240 KSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAMLQAHGFPGELVETCGLMYNPVSGRWKENPGDLDVNYIVTALR 317
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BLAST of mRNA_H-paniculata_contig27057.7402.1 vs. uniprot
Match: A0A1W6CWW7_9RHOB (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Paracoccus contaminans TaxID=1945662 RepID=A0A1W6CWW7_9RHOB)

HSP 1 Score: 89.4 bits (220), Expect = 1.010e-19
Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    4 QSFALAIIGAEYVAGLVPVGTHEWRKFVRPEDLASMLAERGFSTEGVHSCGLIYNPLSGGWCEKWGDVDVNYIMTAVR 237
            QSFA AI+GAE+V   +P GTH+WR+F+RP++LA+ML   G     V S G+++NPL+ GW     D+ VNY+MTAVR
Sbjct:  172 QSFAAAILGAEWVMRWLPRGTHDWRRFIRPDELAAMLQAAGLGV--VDSAGMVFNPLAWGWSLSARDLSVNYLMTAVR 247
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BLAST of mRNA_H-paniculata_contig27057.7402.1 vs. uniprot
Match: A0A7Y2FTL8_9HYPH (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y2FTL8_9HYPH)

HSP 1 Score: 87.0 bits (214), Expect = 6.960e-19
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    4 QSFALAIIGAEYVAGLVPVGTHEWRKFVRPEDLASMLAERGFSTEGVHSCGLIYNPLSGGWCEKWGDVDVNYIMTAVRQQ 243
            +SF LAIIGAEYV G +P GTH+W KF++PE+L + LA+ G +     + G+ YNPL+G W  K  D+DVNY++ A  QQ
Sbjct:  173 KSFGLAIIGAEYVLGWLPRGTHQWEKFIKPEELTTWLADGGLAV--TDTSGVAYNPLNGEW-RKVRDLDVNYMLAATHQQ 249
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BLAST of mRNA_H-paniculata_contig27057.7402.1 vs. uniprot
Match: A0A848ZD45_9PROT (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Inquilinus sp. TaxID=1932117 RepID=A0A848ZD45_9PROT)

HSP 1 Score: 87.0 bits (214), Expect = 7.330e-19
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    4 QSFALAIIGAEYVAGLVPVGTHEWRKFVRPEDLASMLAERGFSTEGVHSCGLIYNPLSGGWCEKWGDVDVNYIMTA 231
            +SF LAI+GAEYV   VP GTH+WRKFVRP +LA  L   G +TE +   G++YNPL+G W     D+DVNY++ A
Sbjct:  172 KSFGLAILGAEYVLRWVPRGTHDWRKFVRPSELAGGLRRHGIATETMS--GMVYNPLAGTWRLSASDLDVNYLLAA 245
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BLAST of mRNA_H-paniculata_contig27057.7402.1 vs. uniprot
Match: A0A2T1HWH6_9HYPH (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Alsobacter soli TaxID=2109933 RepID=A0A2T1HWH6_9HYPH)

HSP 1 Score: 86.3 bits (212), Expect = 1.520e-18
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:    4 QSFALAIIGAEYVAGLVPVGTHEWRKFVRPEDLASMLAERGFSTEGVHSCGLIYNPLSGGWCEKWGDVDVNYIMTAVRQQTDEAKA 261
            ++FALAI+GAEYV G +P GTH+W KFV P++LA  LA  GF        G++YNPL+G W     D+ VNY++ A R Q   A+A
Sbjct:  173 RAFALAIVGAEYVLGWLPKGTHQWEKFVTPDELADALAGGGFRISD--ETGVVYNPLTGSW-RAASDMSVNYMVAATRAQRPSARA 255
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BLAST of mRNA_H-paniculata_contig27057.7402.1 vs. uniprot
Match: A0A2E5PJE1_9PROT (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PJE1_9PROT)

HSP 1 Score: 84.7 bits (208), Expect = 5.680e-18
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    4 QSFALAIIGAEYVAGLVPVGTHEWRKFVRPEDLASMLAERGFSTEGVHSCGLIYNPLSGGWCEKWGDVDVNYIMTAVR 237
            +SFALAI+GAEYV   +P GTH+WR+FVRP +LA+ L + G     +   G+I+NPL+G W     D+DVNY+  AVR
Sbjct:  176 KSFALAIVGAEYVLRWLPRGTHDWRRFVRPSELATGLRQTGMQVTSL--TGVIFNPLTGNWSLNDRDLDVNYMAVAVR 251
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BLAST of mRNA_H-paniculata_contig27057.7402.1 vs. uniprot
Match: A0A7V2SPZ4_9HYPH (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7V2SPZ4_9HYPH)

HSP 1 Score: 84.3 bits (207), Expect = 7.840e-18
Identity = 39/78 (50.00%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    4 QSFALAIIGAEYVAGLVPVGTHEWRKFVRPEDLASMLAERGFSTEGVHSCGLIYNPLSGGWCEKWGDVDVNYIMTAVR 237
            +SF LAIIGAEY+ G +P GTH+W KF++PE+L S L E G S + +   G+ YNP++G W  + GDV VNY++ A++
Sbjct:  175 KSFGLAIIGAEYILGWMPKGTHQWEKFIKPEELKSWLEEAGMSQKTLS--GVTYNPITGTW-NRSGDVAVNYMIAAMK 249
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BLAST of mRNA_H-paniculata_contig27057.7402.1 vs. uniprot
Match: A0A3M1JX02_9PROT (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JX02_9PROT)

HSP 1 Score: 84.3 bits (207), Expect = 8.900e-18
Identity = 37/78 (47.44%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    4 QSFALAIIGAEYVAGLVPVGTHEWRKFVRPEDLASMLAERGFSTEGVHSCGLIYNPLSGGWCEKWGDVDVNYIMTAVR 237
            ++F +AI+GAEYV   +P GTH+WRKF+RP +LA ++ + G      H  GL+YNPL+G W     D+DVNY+++A R
Sbjct:  183 KAFLMAIVGAEYVMRWLPRGTHDWRKFLRPSELAELIRDAGLVPH--HQTGLVYNPLAGAWSLSERDLDVNYMVSAHR 258
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BLAST of mRNA_H-paniculata_contig27057.7402.1 vs. uniprot
Match: UPI0006919FDB (bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG n=1 Tax=Thermopetrobacter sp. TC1 TaxID=1495045 RepID=UPI0006919FDB)

HSP 1 Score: 84.3 bits (207), Expect = 8.900e-18
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:    1 FQSFALAIIGAEYVAGLVPVGTHEWRKFVRPEDLASMLAERGFSTEGVHSCGLIYNPLSGGWCEKWGDVDVNYIMTAVRQ 240
            F+SFA+AI+GAEYV G +P GTH+W KFV+PE+L   L   G   E +   G+ YNP SG W +   D+DVNY++ A ++
Sbjct:  181 FKSFAMAIVGAEYVLGWLPRGTHQWEKFVKPEELQDWLNAAGL--EVIDRTGVAYNPFSGKWLKAPRDMDVNYMLLARKR 258
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BLAST of mRNA_H-paniculata_contig27057.7402.1 vs. uniprot
Match: A0A4Q9VW75_9HYPH (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Siculibacillus lacustris TaxID=1549641 RepID=A0A4Q9VW75_9HYPH)

HSP 1 Score: 84.0 bits (206), Expect = 1.100e-17
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    4 QSFALAIIGAEYVAGLVPVGTHEWRKFVRPEDLASMLAERGFSTEGVHSCGLIYNPLSGGWCEKWGDVDVNYIMTAVR 237
            +SFALAI+GAEYV   +P GTH W KFV P++L   +   G +   + +CG++++PL+G W  K GD+DVNY+M A R
Sbjct:  173 KSFALAIVGAEYVLRWLPPGTHTWSKFVTPKELNRAVEATGLAV--LDACGMVFDPLAGTWSLKAGDLDVNYLMVAER 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27057.7402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR1_ECTSI1.070e-3069.23Ubiquinone biosynthesis O-methyltransferase, mitoc... [more]
A0A1W6CWW7_9RHOB1.010e-1952.56Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
A0A7Y2FTL8_9HYPH6.960e-1951.25Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
A0A848ZD45_9PROT7.330e-1953.95Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
A0A2T1HWH6_9HYPH1.520e-1848.84Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
A0A2E5PJE1_9PROT5.680e-1851.28Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
A0A7V2SPZ4_9HYPH7.840e-1850.00Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
A0A3M1JX02_9PROT8.900e-1847.44Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
UPI0006919FDB8.900e-1848.75bifunctional 2-polyprenyl-6-hydroxyphenol methylas... [more]
A0A4Q9VW75_9HYPH1.100e-1748.72Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27057contigH-paniculata_contig27057:205..483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue8.9e-25
Seed eggNOG ortholog2880.D8LMR1
Preferred nameCOQ3
KEGG rclassRC00003,RC00392,RC01895
KEGG koko:K00568,ko:K00591
KEGG ReactionR02175,R04711,R04988,R05614,R07235,R08769,R08771,R08781
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00117,M00128
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004395,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008757,GO:0009058,GO:0009108,GO:0009987,GO:0010420,GO:0016020,GO:0016740,GO:0016741,GO:0019866,GO:0019898,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032259,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051186,GO:0051188,GO:0061542,GO:0061543,GO:0071704,GO:1901576,GO:1901661,GO:1901663
EggNOG free text desc.hexaprenyldihydroxybenzoate methyltransferase activity
EggNOG OGsCOG2227@1,KOG1270@2759
Ec32 ortholog descriptionUbiquinone biosynthesis O-methyltransferase
Ec32 orthologEc-02_003340.1
EC2.1.1.114,2.1.1.222,2.1.1.64
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929813.9173787-CDS-H-paniculata_contig27057:204..4831622929813.9173787-CDS-H-paniculata_contig27057:204..483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27057 205..483 +
1691481022.9290771-CDS-H-paniculata_contig27057:204..4831691481022.9290771-CDS-H-paniculata_contig27057:204..483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27057 205..483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27057.7402.1prot_H-paniculata_contig27057.7402.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27057 205..483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27057.7402.1

>prot_H-paniculata_contig27057.7402.1 ID=prot_H-paniculata_contig27057.7402.1|Name=mRNA_H-paniculata_contig27057.7402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
FQSFALAIIGAEYVAGLVPVGTHEWRKFVRPEDLASMLAERGFSTEGVHS
CGLIYNPLSGGWCEKWGDVDVNYIMTAVRQQTDEAKARRKIR*
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mRNA from alignment at H-paniculata_contig27057:205..483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27057.7402.1 ID=mRNA_H-paniculata_contig27057.7402.1|Name=mRNA_H-paniculata_contig27057.7402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at H-paniculata_contig27057:205..483+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCAGTCCTTTGCGCTTGCCATCATTGGCGCAGAGTATGTTGCAGGGCT
GGTGCCGGTAGGAACGCACGAATGGAGAAAATTTGTGCGTCCAGAAGATC
TGGCCTCCATGTTAGCGGAGCGGGGTTTCTCGACCGAAGGCGTGCATTCA
TGCGGATTGATTTACAATCCTCTTTCGGGGGGGTGGTGCGAGAAGTGGGG
TGACGTAGATGTGAATTACATCATGACTGCTGTGCGGCAACAGACCGACG
AAGCGAAAGCGCGACGGAAAATTCGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig27057:205..483+

>mRNA_H-paniculata_contig27057.7402.1 ID=mRNA_H-paniculata_contig27057.7402.1|Name=mRNA_H-paniculata_contig27057.7402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig27057:205..483+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCAGTCCTTTGCGCTTGCCATCATTGGCGCAGAGTATGTTGCAGGGCT
GGTGCCGGTAGGAACGCACGAATGGAGAAAATTTGTGCGTCCAGAAGATC
TGGCCTCCATGTTAGCGGAGCGGGGTTTCTCGACCGAAGGCGTGCATTCA
TGCGGATTGATTTACAATCCTCTTTCGGGGGGGTGGTGCGAGAAGTGGGG
TGACGTAGATGTGAATTACATCATGACTGCTGTGCGGCAACAGACCGACG
AAGCGAAAGCGCGACGGAAAATTCGATGATTTCAGTCCTTTGCGCTTGCC
ATCATTGGCGCAGAGTATGTTGCAGGGCTGGTGCCGGTAGGAACGCACGA
ATGGAGAAAATTTGTGCGTCCAGAAGATCTGGCCTCCATGTTAGCGGAGC
GGGGTTTCTCGACCGAAGGCGTGCATTCATGCGGATTGATTTACAATCCT
CTTTCGGGGGGGTGGTGCGAGAAGTGGGGTGACGTAGATGTGAATTACAT
CATGACTGCTGTGCGGCAACAGACCGACGAAGCGAAAGCGCGACGGAAAA
TTCGATGA
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