mRNA_H-paniculata_contig2704.7400.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2704.7400.1
Unique NamemRNA_H-paniculata_contig2704.7400.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2704.7400.1 vs. uniprot
Match: D7FLG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLG9_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 4.360e-51
Identity = 76/111 (68.47%), Postives = 92/111 (82.88%), Query Frame = 1 
Query:    7 KRIIKPAMWLPVLRYPHNWWETWAVETAEPEECIKDMGRAIENVADSARAPEGVGGGSMLFRLDSLRYSAEERAGYATMICMTKARWMDIVELKVFKSEGGEAGSVVQAHG 339
            ++ +KPAMWLP LRYPHNWWETW+V TA+PE C++DMGRAIENVA +A + EG+G G M+F+L SLRY AEE  GYA MIC++KARW+DIVELKV+K EGG  GS V AHG
Sbjct:   32 QKFLKPAMWLPGLRYPHNWWETWSVATADPEVCVRDMGRAIENVAIAAESSEGIGDGQMVFQLASLRYCAEEGVGYAKMICVSKARWLDIVELKVYKPEGGGEGSEVAAHG 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2704.7400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLG9_ECTSI4.360e-5168.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2704contigH-paniculata_contig2704:19252..19593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size315
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929813.709383-UTR-H-paniculata_contig2704:19251..192781622929813.709383-UTR-H-paniculata_contig2704:19251..19278Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2704 19252..19278 +
1691481022.8247426-UTR-H-paniculata_contig2704:19251..192781691481022.8247426-UTR-H-paniculata_contig2704:19251..19278Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2704 19252..19278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929813.7324123-CDS-H-paniculata_contig2704:19278..195931622929813.7324123-CDS-H-paniculata_contig2704:19278..19593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2704 19279..19593 +
1691481022.8334389-CDS-H-paniculata_contig2704:19278..195931691481022.8334389-CDS-H-paniculata_contig2704:19278..19593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2704 19279..19593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2704.7400.1prot_H-paniculata_contig2704.7400.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2704 19279..19593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2704.7400.1

>prot_H-paniculata_contig2704.7400.1 ID=prot_H-paniculata_contig2704.7400.1|Name=mRNA_H-paniculata_contig2704.7400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MWLPVLRYPHNWWETWAVETAEPEECIKDMGRAIENVADSARAPEGVGGG
SMLFRLDSLRYSAEERAGYATMICMTKARWMDIVELKVFKSEGGEAGSVV
QAHG*
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mRNA from alignment at H-paniculata_contig2704:19252..19593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2704.7400.1 ID=mRNA_H-paniculata_contig2704.7400.1|Name=mRNA_H-paniculata_contig2704.7400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig2704:19252..19593+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAAAAAGCGAATTATAAAGCCGGCCATGTGGCTCCCAGTTTTGCGGTA
CCCGCATAACTGGTGGGAAACATGGGCCGTTGAAACCGCCGAGCCGGAGG
AGTGCATCAAAGACATGGGGCGCGCGATCGAAAACGTGGCGGACTCCGCC
AGGGCGCCGGAGGGCGTCGGCGGTGGGTCGATGCTCTTCCGTCTAGATTC
GTTGCGATACTCGGCCGAAGAGCGCGCGGGCTACGCTACGATGATCTGTA
TGACGAAGGCGCGCTGGATGGATATCGTGGAGCTGAAGGTGTTCAAGTCG
GAGGGCGGTGAGGCGGGCAGCGTAGTGCAGGCACACGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2704:19252..19593+

>mRNA_H-paniculata_contig2704.7400.1 ID=mRNA_H-paniculata_contig2704.7400.1|Name=mRNA_H-paniculata_contig2704.7400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig2704:19252..19593+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGCTCCCAGTTTTGCGGTACCCGCATAACTGGTGGGAAACATGGGC
CGTTGAAACCGCCGAGCCGGAGGAGTGCATCAAAGACATGGGGCGCGCGA
TCGAAAACGTGGCGGACTCCGCCAGGGCGCCGGAGGGCGTCGGCGGTGGG
TCGATGCTCTTCCGTCTAGATTCGTTGCGATACTCGGCCGAAGAGCGCGC
GGGCTACGCTACGATGATCTGTATGACGAAGGCGCGCTGGATGGATATCG
TGGAGCTGAAGGTGTTCAAGTCGGAGGGCGGTGAGGCGGGCAGCGTAGTG
CAGGCACACGGGTGAATGTGGCTCCCAGTTTTGCGGTACCCGCATAACTG
GTGGGAAACATGGGCCGTTGAAACCGCCGAGCCGGAGGAGTGCATCAAAG
ACATGGGGCGCGCGATCGAAAACGTGGCGGACTCCGCCAGGGCGCCGGAG
GGCGTCGGCGGTGGGTCGATGCTCTTCCGTCTAGATTCGTTGCGATACTC
GGCCGAAGAGCGCGCGGGCTACGCTACGATGATCTGTATGACGAAGGCGC
GCTGGATGGATATCGTGGAGCTGAAGGTGTTCAAGTCGGAGGGCGGTGAG
GCGGGCAGCGTAGTGCAGGCACACGGGTGA
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