mRNA_H-paniculata_contig26995.7387.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26995.7387.1
Unique NamemRNA_H-paniculata_contig26995.7387.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26995.7387.1 vs. uniprot
Match: A0A6H5L5K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K5_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 2.940e-49
Identity = 84/112 (75.00%), Postives = 98/112 (87.50%), Query Frame = 1
Query:   13 NKMAAAVAKIK-SMPTVLQPLALSYMFNSQVKLAGTAGVRVEELSADRSVVKVANIRKVRNHIGGVHACGMALAAESATGILMGMNVPDSRLPLCKSMAVDFKRRAEGAIVA 345
            NK+A+ V KIK ++P  LQP ALS MFNSQVKLAGTAGVRVEEL+  RSVVKVAN+R+V+NHIG VHACGMALAAESATGIL+GM+VPDSRLPLCKSMA+DF R ++G + A
Sbjct:    5 NKIASMVGKIKGNLPASLQPWALSLMFNSQVKLAGTAGVRVEELTPHRSVVKVANVRRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTA 116          
BLAST of mRNA_H-paniculata_contig26995.7387.1 vs. uniprot
Match: A0A836CKL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL5_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.200e-39
Identity = 68/113 (60.18%), Postives = 90/113 (79.65%), Query Frame = 1
Query:   10 LNKMAAAVAKIKS-MPTVLQPLALSYMFNSQVKLAGTAGVRVEELSADRSVVKVANIRKVRNHIGGVHACGMALAAESATGILMGMNVPDSRLPLCKSMAVDFKRRAEGAIVA 345
            LNK A AV+K++S MPT LQP A+S MFN+ VK AGTAG+ ++E+   R+VV + N R+V+NHIGGVHACGMAL +E+ATG+L+ +NVPD+ LPLCKS  +DFKR A+G + A
Sbjct:    5 LNKFATAVSKVQSVMPTALQPWAISGMFNTMVKFAGTAGISIDEIGPQRAVVTLKNRRRVQNHIGGVHACGMALLSETATGVLLAINVPDTHLPLCKSFKLDFKRIAKGDLKA 117          
BLAST of mRNA_H-paniculata_contig26995.7387.1 vs. uniprot
Match: K0SX00_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SX00_THAOC)

HSP 1 Score: 138 bits (347), Expect = 2.470e-39
Identity = 68/113 (60.18%), Postives = 91/113 (80.53%), Query Frame = 1
Query:   10 LNKMAAAVAKIKS-MPTVLQPLALSYMFNSQVKLAGTAGVRVEELSADRSVVKVANIRKVRNHIGGVHACGMALAAESATGILMGMNVPDSRLPLCKSMAVDFKRRAEGAIVA 345
            LNKMA+ + +I+S +P  + P A S++FN+ VKLAGTAG+R++ELS  ++ + +AN R+V+NHIGG+HAC MALAAESATGIL+GMNVPD+ LPL K+M VDF RR +G I A
Sbjct:    5 LNKMASTIQRIQSTLPESMHPFANSFLFNNMVKLAGTAGIRIDELSHKKATISLANARRVQNHIGGLHACSMALAAESATGILIGMNVPDTHLPLIKTMKVDFVRRCKGDIRA 117          
BLAST of mRNA_H-paniculata_contig26995.7387.1 vs. uniprot
Match: D7FSZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ6_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 9.440e-39
Identity = 67/87 (77.01%), Postives = 78/87 (89.66%), Query Frame = 1
Query:   85 MFNSQVKLAGTAGVRVEELSADRSVVKVANIRKVRNHIGGVHACGMALAAESATGILMGMNVPDSRLPLCKSMAVDFKRRAEGAIVA 345
            +F  QVKLAGTAGVRVEEL+  RSVVKVAN+R+V+NHIG VHACGMALAAESATGIL+GM+VPDSRLPLCKSMA+DF R ++G + A
Sbjct:   43 IFAFQVKLAGTAGVRVEELTPHRSVVKVANVRRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTA 129          
BLAST of mRNA_H-paniculata_contig26995.7387.1 vs. uniprot
Match: W7T2Q8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Q8_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.940e-36
Identity = 69/113 (61.06%), Postives = 86/113 (76.11%), Query Frame = 1
Query:   10 LNKMAAAVAKIKS-MPTVLQPLALSYMFNSQVKLAGTAGVRVEELSADRSVVKVANIRKVRNHIGGVHACGMALAAESATGILMGMNVPDSRLPLCKSMAVDFKRRAEGAIVA 345
            LN++A  VAK+ S +P   +P   +  F+  VKLAGTA + VEE+S  R+VV + N R+V+NHIGG+HACGMALAAESATGI++GMNVPDS LPLCKSM V+F RR EG I A
Sbjct:    6 LNRLATQVAKLTSPLPAAYKPWGYTLAFDMMVKLAGTARLWVEEMSDKRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKA 118          
BLAST of mRNA_H-paniculata_contig26995.7387.1 vs. uniprot
Match: A0A1G4SMM3_9PSED (DUF4442 domain-containing protein n=10 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1G4SMM3_9PSED)

HSP 1 Score: 125 bits (314), Expect = 2.030e-34
Identity = 64/111 (57.66%), Postives = 83/111 (74.77%), Query Frame = 1
Query:   13 NKMAAAVAKIKSMPTVLQPLALSYMFNSQVKLAGTAGVRVEELSADRSVVKVANIRKVRNHIGGVHACGMALAAESATGILMGMNVPDSRLPLCKSMAVDFKRRAEGAIVA 345
            N+++  V KI+ +PT LQ  ALS +F SQVK AGTA VRV  L+  ++V+ +AN RKV+NHI GVHA  MAL AESATG L+GMNVPD +LPL KS+ VD+ +RA G++ A
Sbjct:    4 NRLSRIVGKIQQLPTALQSPALSLLFGSQVKFAGTAKVRVHTLTQQQAVMSIANKRKVQNHIKGVHAAAMALLAESATGFLVGMNVPDDKLPLIKSLKVDYLKRATGSLRA 114          
BLAST of mRNA_H-paniculata_contig26995.7387.1 vs. uniprot
Match: A0A7S2HF20_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HF20_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.140e-34
Identity = 64/111 (57.66%), Postives = 85/111 (76.58%), Query Frame = 1
Query:   10 LNKMAAAVAKIKS-MPTVLQPLALSYMFNSQVKLAGTAGVRVEELSADRSVVKVANIRKVRNHIGGVHACGMALAAESATGILMGMNVPDSRLPLCKSMAVDFKRRAEGAI 339
            LNKMA+ V K++S +P    PL  S +FN+ VKLAGTAG+RVE++S +   V + N R ++NHIGG+HAC MALAAESATGI++GMNVPD+ +PL K+M VDF +R +G I
Sbjct:    6 LNKMASIVQKMESYLPKSFHPLGYSLLFNNMVKLAGTAGLRVEKMSRNEVEVYLKNRRSIQNHIGGLHACSMALAAESATGIVVGMNVPDTHIPLIKTMNVDFVKRCQGDI 116          
BLAST of mRNA_H-paniculata_contig26995.7387.1 vs. uniprot
Match: UPI00143B6D52 (DUF4442 domain-containing protein n=1 Tax=Solimonas marina TaxID=2714601 RepID=UPI00143B6D52)

HSP 1 Score: 124 bits (310), Expect = 8.210e-34
Identity = 62/111 (55.86%), Postives = 84/111 (75.68%), Query Frame = 1
Query:   13 NKMAAAVAKIKSMPTVLQPLALSYMFNSQVKLAGTAGVRVEELSADRSVVKVANIRKVRNHIGGVHACGMALAAESATGILMGMNVPDSRLPLCKSMAVDFKRRAEGAIVA 345
            N++A AVA +  +P  L+  A + +FNSQV+ AGTAG+R E L+ +++VV VAN R+V+NHIGGVHA  MAL AE+ATG + GMNVPD +LPL KSM VD++RR +G + A
Sbjct:    3 NRLAKAVAWLAPLPASLRRRATTLLFNSQVRFAGTAGLRFEALTVEQAVVVVANRRRVQNHIGGVHAAAMALLAETATGAVFGMNVPDDKLPLLKSMHVDYQRRTQGGLRA 113          
BLAST of mRNA_H-paniculata_contig26995.7387.1 vs. uniprot
Match: A0A1H9F8I9_9GAMM (Acyl-coenzyme A thioesterase PaaI, contains HGG motif n=1 Tax=Solimonas aquatica TaxID=489703 RepID=A0A1H9F8I9_9GAMM)

HSP 1 Score: 123 bits (309), Expect = 1.200e-33
Identity = 61/111 (54.95%), Postives = 82/111 (73.87%), Query Frame = 1
Query:   13 NKMAAAVAKIKSMPTVLQPLALSYMFNSQVKLAGTAGVRVEELSADRSVVKVANIRKVRNHIGGVHACGMALAAESATGILMGMNVPDSRLPLCKSMAVDFKRRAEGAIVA 345
            N ++  VA+++ +P  L   AL+  FNSQV+ AGT G R E LSA +++V +AN RKVRNHIGG+HA  MAL AE+ +G + GMNVPD +LPL KSM VD++RRA+GA+ A
Sbjct:    4 NLLSRVVAQLERLPAPLARRALTLAFNSQVRFAGTGGARFEHLSATQAIVHMANRRKVRNHIGGIHAAAMALLAETTSGAVFGMNVPDDKLPLLKSMHVDYQRRAQGALKA 114          
BLAST of mRNA_H-paniculata_contig26995.7387.1 vs. uniprot
Match: A0A662WWF6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WWF6_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.750e-33
Identity = 60/115 (52.17%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    1 MANLNKMAAAVAKIKSMPTVLQPLALSYMFNSQVKLAGTAGVRVEELSADRSVVKVANIRKVRNHIGGVHACGMALAAESATGILMGMNVPDSRLPLCKSMAVDFKRRAEGAIVA 345
            M  LN++ AAV     +P   +P ALS +FNSQVK+A T G++++ELSA R+ + + N R+V+NHIGGVHACGMAL AESA+G++ GMNV DS +P+ KSM++ + +RA+G + A
Sbjct:    1 MNRLNRLVAAVNTTSLLPAAAKPAALSLLFNSQVKMAFTCGIQIQELSAQRAQLALRNRRRVQNHIGGVHACGMALLAESASGVVFGMNVRDSCIPVIKSMSIRYTKRAQGDLQA 115          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26995.7387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5K5_9PHAE2.940e-4975.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CKL5_9STRA2.200e-3960.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0SX00_THAOC2.470e-3960.18Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
D7FSZ6_ECTSI9.440e-3977.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7T2Q8_9STRA1.940e-3661.06Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A1G4SMM3_9PSED2.030e-3457.66DUF4442 domain-containing protein n=10 Tax=Gammapr... [more]
A0A7S2HF20_9STRA2.140e-3457.66Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
UPI00143B6D528.210e-3455.86DUF4442 domain-containing protein n=1 Tax=Solimona... [more]
A0A1H9F8I9_9GAMM1.200e-3354.95Acyl-coenzyme A thioesterase PaaI, contains HGG mo... [more]
A0A662WWF6_9STRA1.750e-3352.17Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26995contigH-paniculata_contig26995:146..2052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue1.3e-30
Seed eggNOG ortholog159749.K0SX00
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4442)
EggNOG OGs2CYG0@1,2S44Y@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size345
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26995.7387.1prot_H-paniculata_contig26995.7387.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26995 146..2052 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929811.4030852-CDS-H-paniculata_contig26995:145..3071622929811.4030852-CDS-H-paniculata_contig26995:145..307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26995 146..307 -
1691481021.5961483-CDS-H-paniculata_contig26995:145..3071691481021.5961483-CDS-H-paniculata_contig26995:145..307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26995 146..307 -
1622929811.421325-CDS-H-paniculata_contig26995:885..9691622929811.421325-CDS-H-paniculata_contig26995:885..969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26995 886..969 -
1691481021.6161213-CDS-H-paniculata_contig26995:885..9691691481021.6161213-CDS-H-paniculata_contig26995:885..969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26995 886..969 -
1622929811.4353387-CDS-H-paniculata_contig26995:1953..20521622929811.4353387-CDS-H-paniculata_contig26995:1953..2052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26995 1954..2052 -
1691481021.6271245-CDS-H-paniculata_contig26995:1953..20521691481021.6271245-CDS-H-paniculata_contig26995:1953..2052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26995 1954..2052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26995.7387.1

>prot_H-paniculata_contig26995.7387.1 ID=prot_H-paniculata_contig26995.7387.1|Name=mRNA_H-paniculata_contig26995.7387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MANLNKMAAAVAKIKSMPTVLQPLALSYMFNSQVKLAGTAGVRVEELSAD
RSVVKVANIRKVRNHIGGVHACGMALAAESATGILMGMNVPDSRLPLCKS
MAVDFKRRAEGAIVA
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mRNA from alignment at H-paniculata_contig26995:146..2052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26995.7387.1 ID=mRNA_H-paniculata_contig26995.7387.1|Name=mRNA_H-paniculata_contig26995.7387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1907bp|location=Sequence derived from alignment at H-paniculata_contig26995:146..2052- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAACTTGAACAAGATGGCGGCCGCTGTAGCCAAGATCAAGTCGAT GCCGACGGTGTTACAGCCTTTAGCGCTCAGCTACATGTTCAACTCCCAGG TGATGTTGATATTGCCGCTGGCGTACGGTACCAACCCTTTGCTGTAGTTT AGACTGTACATATATAGGTGGAGTTCGACCTCACGGAGCCGCTTGAATGT AAGCTTCGGCCCATGCGAGGACGAACATAACATTACAAACGCCCCCGGTT GAAGTATGGGAGAGTTAAGGCTGAAACAGAACAATTTCACCTATTCTGAA AGCTTGAAATCGATTATCCGTGAATGGCGCGGGTACAAATTTTGAAATGA CAGCAACTTTTGATCGGAGAGCCTGACTGAACCAACAAGAGTATGGGCGG GACCCCTGTCTGCGATATCTTGACGTTTATGACGGCTAAAATAGTTGCAC CGCATCTTTCTTGGGACTGAATGAAAGGATGCCGCCAGCATTAGACGCAC ATCGACCGGACCAGCTAGTGATCCTTTCTCGAGATGGATTTTTTTTGGGA AAACTACTGATGACGACATTGCGCACAAGAACTAGTTCCCATTGTGTGGC ACGAAAAAAGTTTATCACGCGTAATATAGTACCGATACATCCAACTCCCC TATTGAATGTCGACTGGTGCCGAATGAGGAGTGTATGGAGCAGCACTACG ACAGTACACGCTGCATAAACCTAGGTATAGCAAGTTCACAGACACGCCAA ACTATACAGTATATTTTTTCTTGTGAAGAGTAAATAGCGCGCGTTTTTTG CTCAATTCTGTGCCGTTGGCGCCGATTGAAGCTCTGCCAATGTACACTAT GCCTAGGGGATGCGGATTAGGGTTAGGAACATCCCCCCTCCGCCCCCCGG CCTTTCAGTGTGGTCCATGATCTAACAACTATGGCATGCAAAGCATGAGT ACGCCCTTCTCCTCCCCGGCCCTCGCCCCTGCCCCCGGCCTTCAGTAGTT CTTGAGTAGCTCTTCAAATATATAATGACCTGAGCGCATCCCCGCCCTCC GCCGCGATGGATCTTGCGGGTACACGAAAACAGGTGAAACTGGCGGGAAC GGCGGGTGTTAGGGTGGAAGAATTGAGTGCAGACCGTTCCGTGGTGAAGG TGGCCAACATTCGGAAAGTGAGACTTACATGTGGTATTTGATGGTCCTTA TTTTATATTATCACGCGTAATGTGTTGGGGAGCACCATGCCCAGGCCCTG CAACTCCGTCGGATATCTGCCATACTCCAAATCGACAGGTTTATAAAAAA CGTCTTGAGCAGCTGAAGCCTGCCTGTCCACAAGCAATCGCGAGCGATTT TTTTATCCGATGAACCGTTGTCGGGCGGGCATCATCGTCACGTCCCAACT TCATTATGTGCTAAGACCTTCCCTTCTTAGTCATAATCTAATTTTGTAGA TAAGTATACACAACGGAAGTTTCAGGTCAGCTACTGCAACGCTAACCGCA ACATGGGTACGATAGAGTGTTACTATAAGAGCGTCGTAGTTATATTAACT GTGGCAGGTGGGTTGATTGATGAGCGAGAATCCCGGTAGGTGAATTGGAA TTGGGTGTTATATTTCTGTCATGCGTTCACGTGAAGGCCGTTTCATGTTC ACGTGCCAACCCTCCCCCCGCCCCTGACCCCCCCCCCCCTATGTACATAT TTATGGGCATATGCGCTTCGGACGCTGGCACCCTATTTGAGAAAGGTTCG AAACCATATCGGTGGGGTCCACGCCTGTGGAATGGCGCTCGCAGCAGAAT CTGCGACGGGAATTTTGATGGGTATGAATGTTCCAGATAGCCGATTACCC CTGTGCAAGAGCATGGCAGTGGATTTCAAGAGGCGGGCTGAAGGTGCGAT AGTAGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig26995:146..2052-

>mRNA_H-paniculata_contig26995.7387.1 ID=mRNA_H-paniculata_contig26995.7387.1|Name=mRNA_H-paniculata_contig26995.7387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig26995:146..2052- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAACTTGAACAAGATGGCGGCCGCTGTAGCCAAGATCAAGTCGAT
GCCGACGGTGTTACAGCCTTTAGCGCTCAGCTACATGTTCAACTCCCAGA
TGGCGAACTTGAACAAGATGGCGGCCGCTGTAGCCAAGATCAAGTCGATG
CCGACGGTGTTACAGCCTTTAGCGCTCAGCTACATGTTCAACTCCCAGGT
GAAACTGGCGGGAACGGCGGGTGTTAGGGTGGAAGAATTGAGTGCAGACC
GTTCCGTGGTGAAGGTGGCCAACATTCGGAAAGTGAAACTGGCGGGAACG
GCGGGTGTTAGGGTGGAAGAATTGAGTGCAGACCGTTCCGTGGTGAAGGT
GGCCAACATTCGGAAAGTTCGAAACCATATCGGTGGGGTCCACGCCTGTG
GAATGGCGCTCGCAGCAGAATCTGCGACGGGAATTTTGATGGGTATGAAT
GTTCCAGATAGCCGATTACCCCTGTGCAAGAGCATGGCAGTGGATTTCAA
GAGGCGGGCTGAAGGTGCGATAGTAGCAGTTCGAAACCATATCGGTGGGG
TCCACGCCTGTGGAATGGCGCTCGCAGCAGAATCTGCGACGGGAATTTTG
ATGGGTATGAATGTTCCAGATAGCCGATTACCCCTGTGCAAGAGCATGGC
AGTGGATTTCAAGAGGCGGGCTGAAGGTGCGATAGTAGCA
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