mRNA_H-paniculata_contig26969.7379.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26969.7379.1
Unique NamemRNA_H-paniculata_contig26969.7379.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26969.7379.1 vs. uniprot
Match: D7FX37_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX37_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 6.060e-34
Identity = 72/89 (80.90%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:    1 MCQGVVSTFKDHRSLALTLQDSEHIARKLGLIITGIMFFILVFVWLSIWGADVLSLSVTFASFLIAFSFMIGPSASNLMSSVIFIFVVR 267
            M  GVV TFKDHRSLA TLQDSEHIA+KLGLII  ++ FIL FVWLSIWGADV+SLSVTFASFLIAFSFMIG +ASNLMS+V+FIFV R
Sbjct:  872 MVLGVVGTFKDHRSLAHTLQDSEHIAQKLGLIIMCVILFILFFVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMSAVLFIFVSR 960
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BLAST of mRNA_H-paniculata_contig26969.7379.1 vs. uniprot
Match: A0A6H5JDS1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS1_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 6.060e-34
Identity = 72/89 (80.90%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:    1 MCQGVVSTFKDHRSLALTLQDSEHIARKLGLIITGIMFFILVFVWLSIWGADVLSLSVTFASFLIAFSFMIGPSASNLMSSVIFIFVVR 267
            M  GVV TFKDHRSLA TLQDSEHIA+KLGLII  ++ FIL FVWLSIWGADV+SLSVTFASFLIAFSFMIG +ASNLMS+V+FIFV R
Sbjct:  920 MVLGVVGTFKDHRSLAHTLQDSEHIAQKLGLIIMCVILFILFFVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMSAVLFIFVSR 1008
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BLAST of mRNA_H-paniculata_contig26969.7379.1 vs. uniprot
Match: A0A6H5JBC1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC1_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.030e-31
Identity = 70/89 (78.65%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 MCQGVVSTFKDHRSLALTLQDSEHIARKLGLIITGIMFFILVFVWLSIWGADVLSLSVTFASFLIAFSFMIGPSASNLMSSVIFIFVVR 267
            M  GVV TFKDHRSLA TL DSEHIARKLGLII  ++ FIL FVWLSI G DVLSLSVTFASFLIAFSFMIG +ASNLM++V+FIFV R
Sbjct:  905 MVLGVVDTFKDHRSLAHTLHDSEHIARKLGLIIFWLILFILAFVWLSILGFDVLSLSVTFASFLIAFSFMIGTAASNLMTAVLFIFVSR 993
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BLAST of mRNA_H-paniculata_contig26969.7379.1 vs. uniprot
Match: A0A835Z0M4_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M4_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.470e-22
Identity = 47/87 (54.02%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    1 MCQGVVSTFKDHRSLALTLQDSEHIARKLGLIITGIMFFILVFVWLSIWGADVLSLSVTFASFLIAFSFMIGPSASNLMSSVIFIFV 261
            + QGVVS +KDH++LA TL DS+ +  KLG II  +M F+++F+WLSIWG   LS+S+TF+SFL++F+FM G +A+ L+ S+IF+FV
Sbjct:  715 LLQGVVSIYKDHKNLARTLADSQQMVNKLGQIIGALMSFVMIFIWLSIWGYQFLSISITFSSFLLSFTFMFGSTATALVESIIFVFV 801
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BLAST of mRNA_H-paniculata_contig26969.7379.1 vs. uniprot
Match: A0A835YNP7_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNP7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.570e-20
Identity = 44/86 (51.16%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:   10 GVVSTFKDHRSLALTLQDSEHIARKLGLIITGIMFFILVFVWLSIWGADVLSLSVTFASFLIAFSFMIGPSASNLMSSVIFIFVVR 267
            GVV+ +KDH+SLALTLQDS+ +A KLG ++   +   L+F+WL I+G D+ +L++TFAS L+  S +IGP+++NL +S++FIFV R
Sbjct:   24 GVVNIYKDHQSLALTLQDSQRMAHKLGEVLGAGILIALIFIWLRIFGRDIFALTLTFASVLVGVSVLIGPASANLFASIVFIFVQR 109
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BLAST of mRNA_H-paniculata_contig26969.7379.1 vs. uniprot
Match: D7FX36_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX36_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 9.870e-13
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:  127 FVWLSIWGADVLSLSVTFASFLIAFSFMIGPSASNLMSSVIFIFVVR 267
            FVWLSI G DVLSLSVTFASFLIAFSFMIG +ASNLMS+V+FIFV R
Sbjct:  806 FVWLSILGFDVLSLSVTFASFLIAFSFMIGTAASNLMSAVLFIFVSR 852
[Close]
BLAST of mRNA_H-paniculata_contig26969.7379.1 vs. uniprot
Match: A0A059LQS4_9CHLO (EF-hand domain-containing protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LQS4_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 5.110e-8
Identity = 30/86 (34.88%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:   10 GVVSTFKDHRSLALTLQDSEHIARKLGLIITGIMFFILVFVWLSIWGADVLSLSVTFASFLIAFSFMIGPSASNLMSSVIFIFVVR 267
             V S F+D  +LA +L D+  +   L L+I G++  I+VF++L I+G +VL   ++F+S ++AFSF+   S   +  + +F+FV+ 
Sbjct:  131 AVASVFRDRENLAASLADARSVVGSLELVIGGVLHVIMVFLYLVIFGVNVLQFYLSFSSLVLAFSFVFQQSLRMIYENAVFLFVIH 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26969.7379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FX37_ECTSI6.060e-3480.90Small Conductance Mechanosensitive Ion channel n=1... [more]
A0A6H5JDS1_9PHAE6.060e-3480.90EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JBC1_9PHAE3.030e-3178.65EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835Z0M4_9STRA2.470e-2254.02Mechanosensitive ion channel-domain-containing pro... [more]
A0A835YNP7_9STRA3.570e-2051.16Mechanosensitive ion channel-domain-containing pro... [more]
D7FX36_ECTSI9.870e-1385.11Small Conductance Mechanosensitive Ion channel n=1... [more]
A0A059LQS4_9CHLO5.110e-834.88EF-hand domain-containing protein n=1 Tax=Helicosp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26969contigH-paniculata_contig26969:84..905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue2.2e-28
Seed eggNOG ortholog2880.D7FX37
KEGG koko:K02575,ko:K22048
KEGG TC1.A.23.4,2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.mechanosensitive ion channel activity
EggNOG OGsCOG0668@1,KOG4629@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons2
Model size270
Cds size270
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929810.246046-CDS-H-paniculata_contig26969:83..2091622929810.246046-CDS-H-paniculata_contig26969:83..209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26969 84..209 +
1691481021.0671096-CDS-H-paniculata_contig26969:83..2091691481021.0671096-CDS-H-paniculata_contig26969:83..209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26969 84..209 +
1622929810.2625442-CDS-H-paniculata_contig26969:761..9051622929810.2625442-CDS-H-paniculata_contig26969:761..905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26969 762..905 +
1691481021.0762856-CDS-H-paniculata_contig26969:761..9051691481021.0762856-CDS-H-paniculata_contig26969:761..905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26969 762..905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26969.7379.1prot_H-paniculata_contig26969.7379.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26969 84..905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26969.7379.1

>prot_H-paniculata_contig26969.7379.1 ID=prot_H-paniculata_contig26969.7379.1|Name=mRNA_H-paniculata_contig26969.7379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MCQGVVSTFKDHRSLALTLQDSEHIARKLGLIITGIMFFILVFVWLSIWG
ADVLSLSVTFASFLIAFSFMIGPSASNLMSSVIFIFVVR*
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mRNA from alignment at H-paniculata_contig26969:84..905+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26969.7379.1 ID=mRNA_H-paniculata_contig26969.7379.1|Name=mRNA_H-paniculata_contig26969.7379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=822bp|location=Sequence derived from alignment at H-paniculata_contig26969:84..905+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCCAGGGCGTAGTCAGCACCTTCAAAGACCACCGAAGCCTAGCCTT
AACGCTGCAGGACAGCGAGCACATCGCGAGGAAGCTCGGTCTAATCATAA
CGGGAATAATGTTCTTCATCCTCGTTGTGAGTGTTGATTACAGGTTTGGT
TTAATTTAGTTTGGTTTGCTGCATTTTTTTTTTTTTTTTGCTCTTGTGTC
ATGTCAGTCAGATCCAAACATCACAAGGGATTGCGTTTTTTTTTTTTTTT
TTCCTCCTTGAGGTCTTGAGTTTTTTCCTCCTTGAGGTCTTGAGTTTTTT
ACTCGTGGACCGTAGGTGCGCTTGCATGCATGCACTTGTTTTGTGTCTTT
TATGGTTTCAAGTATGTGTGCAAAAAGGGAAAAATGGGGACTCTCTACCA
CATGAAATTGGGGAATGTCTGTAGAGTTGGGGCGGGAGGGGGAGTAACTG
GGAGTACGGTCACCATGTCAGCTAACTTTATTGGATTCTATTTTGCCTGC
TGGTCACATGCGAATTGCTCACTCGGTGCCTTGGGTATGCTGCAATGTTG
TGCCAAAAGTCGTTTTTGCACTCAGACTAGTAAGGTGCCTGGCTCGAAAA
ATATAGCTCGTCGAGTTCACCCTCCCCCACTTCGGTTGAAATGGCTTTTC
GTTTTTGTATTCGCTGGAATTTATACAGTTCGTGTGGCTCTCTATATGGG
GAGCGGATGTTCTTTCCCTGAGCGTGACGTTCGCTTCCTTCCTCATCGCT
TTCTCCTTCATGATTGGGCCGTCGGCGAGCAACCTGATGTCCTCTGTCAT
CTTTATCTTCGTCGTGAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig26969:84..905+

>mRNA_H-paniculata_contig26969.7379.1 ID=mRNA_H-paniculata_contig26969.7379.1|Name=mRNA_H-paniculata_contig26969.7379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig26969:84..905+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCCAGGGCGTAGTCAGCACCTTCAAAGACCACCGAAGCCTAGCCTT
AACGCTGCAGGACAGCGAGCACATCGCGAGGAAGCTCGGTCTAATCATAA
CGGGAATAATGTTCTTCATCCTCGTTATGTGCCAGGGCGTAGTCAGCACC
TTCAAAGACCACCGAAGCCTAGCCTTAACGCTGCAGGACAGCGAGCACAT
CGCGAGGAAGCTCGGTCTAATCATAACGGGAATAATGTTCTTCATCCTCG
TTTTCGTGTGGCTCTCTATATGGGGAGCGGATGTTCTTTCCCTGAGCGTG
ACGTTCGCTTCCTTCCTCATCGCTTTCTCCTTCATGATTGGGCCGTCGGC
GAGCAACCTGATGTCCTCTGTCATCTTTATCTTCGTCGTGAGGTAATTCG
TGTGGCTCTCTATATGGGGAGCGGATGTTCTTTCCCTGAGCGTGACGTTC
GCTTCCTTCCTCATCGCTTTCTCCTTCATGATTGGGCCGTCGGCGAGCAA
CCTGATGTCCTCTGTCATCTTTATCTTCGTCGTGAGGTAA
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