mRNA_H-paniculata_contig26967.7378.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26967.7378.1
Unique NamemRNA_H-paniculata_contig26967.7378.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26967.7378.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 8.170e-15
Identity = 58/145 (40.00%), Postives = 78/145 (53.79%), Query Frame = 2 
Query:  317 LAVTPSTSLDLSSVFACEDGAFEVQWSGTVSITETIRIGRGTTVAIIG--------------GGSDISGGTSDGET------AEVNQFAAIAAVNAF--GPIFVANGSVLHLEGIAIRYGNATDSVGEGLVNGGGVHALDADVTV 685
            LAV+P++ +DL +VF CEDG FEV WSG VS+  TI IG GTTV I G              G +  S  + D E          +  +A+ A +    GPIF  NG  L L  +A+R GNAT      + +GGGVHA+ ++VT+
Sbjct:   55 LAVSPTSGVDLETVFDCEDGEFEVVWSGEVSVPGTIYIGSGTTVNIYGEDTTTXXXXXXSGIGSTGFSSFSGDDELWSGLSLPRDDLSSAVVAGSGLSDGPIFFVNGGQLSLNALAVRDGNATGDSNATVDSGGGVHAVQSNVTI 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26967.7378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4A5_9PHAE8.170e-1540.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26967contigH-paniculata_contig26967:2421..3108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size688
Cds size414
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929810.188202-UTR-H-paniculata_contig26967:2420..26941622929810.188202-UTR-H-paniculata_contig26967:2420..2694Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26967 2421..2694 +
1691481021.0482543-UTR-H-paniculata_contig26967:2420..26941691481021.0482543-UTR-H-paniculata_contig26967:2420..2694Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26967 2421..2694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929810.1999497-CDS-H-paniculata_contig26967:2694..31081622929810.1999497-CDS-H-paniculata_contig26967:2694..3108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26967 2695..3108 +
1691481021.059042-CDS-H-paniculata_contig26967:2694..31081691481021.059042-CDS-H-paniculata_contig26967:2694..3108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26967 2695..3108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26967.7378.1prot_H-paniculata_contig26967.7378.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26967 2695..3108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26967.7378.1

>prot_H-paniculata_contig26967.7378.1 ID=prot_H-paniculata_contig26967.7378.1|Name=mRNA_H-paniculata_contig26967.7378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MASAAPCDSTAQESLAVTPSTSLDLSSVFACEDGAFEVQWSGTVSITETI
RIGRGTTVAIIGGGSDISGGTSDGETAEVNQFAAIAAVNAFGPIFVANGS
VLHLEGIAIRYGNATDSVGEGLVNGGGVHALDADVTVV
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mRNA from alignment at H-paniculata_contig26967:2421..3108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26967.7378.1 ID=mRNA_H-paniculata_contig26967.7378.1|Name=mRNA_H-paniculata_contig26967.7378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=688bp|location=Sequence derived from alignment at H-paniculata_contig26967:2421..3108+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGCGGGTATCAGAGAGTGTCATTCGAACGAGGGAAGTGAAAGCAGGG
CAACAAACTCGAGCCAAAACGTCATCATCGATACCGCAGCAAGCTGACTG
GTGCAGCATCAACGGCGGTATCGCACACTTGGGTGTCGATGCCCCGCGTC
GCGTGTCTTCTCTTTCTCAGCTAATCATTTCTTAGCGTCAGCATCGTAAC
TCTTACTTTTTATTTCACCATTCCTACTGCCGCCCAGCACGCTCGATCCG
CTATCCGTCGGGTCGCCATACCAGATGGCGTCCGCCGCTCCGTGCGACTC
CACCGCCCAGGAGTCCCTCGCCGTCACACCCTCCACCTCTCTGGATTTAT
CCTCGGTTTTTGCCTGTGAGGATGGTGCGTTCGAAGTACAATGGTCTGGA
ACAGTAAGTATCACGGAGACTATCCGCATAGGCCGGGGGACGACTGTCGC
CATTATCGGAGGTGGAAGTGATATCAGTGGCGGAACTTCGGACGGGGAGA
CCGCCGAGGTGAATCAATTTGCTGCAATAGCAGCGGTAAATGCATTCGGT
CCCATATTCGTGGCGAATGGCTCCGTGCTTCATCTGGAGGGTATAGCAAT
TCGCTACGGTAACGCCACTGATTCAGTGGGCGAGGGTCTTGTCAATGGGG
GAGGTGTGCATGCTTTGGACGCGGATGTGACAGTTGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig26967:2421..3108+

>mRNA_H-paniculata_contig26967.7378.1 ID=mRNA_H-paniculata_contig26967.7378.1|Name=mRNA_H-paniculata_contig26967.7378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig26967:2421..3108+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTCCGCCGCTCCGTGCGACTCCACCGCCCAGGAGTCCCTCGCCGT
CACACCCTCCACCTCTCTGGATTTATCCTCGGTTTTTGCCTGTGAGGATG
GTGCGTTCGAAGTACAATGGTCTGGAACAGTAAGTATCACGGAGACTATC
CGCATAGGCCGGGGGACGACTGTCGCCATTATCGGAGGTGGAAGTGATAT
CAGTGGCGGAACTTCGGACGGGGAGACCGCCGAGGTGAATCAATTTGCTG
CAATAGCAGCGGTAAATGCATTCGGTCCCATATTCGTGGCGAATGGCTCC
GTGCTTCATCTGGAGGGTATAGCAATTCGCTACGGTAACGCCACTGATTC
AGTGGGCGAGGGTCTTGTCAATGGGGGAGGTGTGCATGCTTTGGACGCGG
ATGTGACAGTTGTGATGGCGTCCGCCGCTCCGTGCGACTCCACCGCCCAG
GAGTCCCTCGCCGTCACACCCTCCACCTCTCTGGATTTATCCTCGGTTTT
TGCCTGTGAGGATGGTGCGTTCGAAGTACAATGGTCTGGAACAGTAAGTA
TCACGGAGACTATCCGCATAGGCCGGGGGACGACTGTCGCCATTATCGGA
GGTGGAAGTGATATCAGTGGCGGAACTTCGGACGGGGAGACCGCCGAGGT
GAATCAATTTGCTGCAATAGCAGCGGTAAATGCATTCGGTCCCATATTCG
TGGCGAATGGCTCCGTGCTTCATCTGGAGGGTATAGCAATTCGCTACGGT
AACGCCACTGATTCAGTGGGCGAGGGTCTTGTCAATGGGGGAGGTGTGCA
TGCTTTGGACGCGGATGTGACAGTTGTG
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