mRNA_H-paniculata_contig26955.7377.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26955.7377.1
Unique NamemRNA_H-paniculata_contig26955.7377.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26955.7377.1 vs. uniprot
Match: D7FP05_ECTSI (GPA1, alpha subunit of a heterotrimeric G protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP05_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 3.130e-23
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    4 TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKILFGVVSDEEKKQITPV 171
            TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKILFGVVS EEKKQ+TPV
Sbjct:   19 TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKILFGVVSAEEKKQMTPV 74
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BLAST of mRNA_H-paniculata_contig26955.7377.1 vs. uniprot
Match: A0A836CAY4_9STRA (GPA1, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.210e-17
Identity = 43/55 (78.18%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    7 KEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKILFGVVSDEEKKQITPV 171
            KEVEA  A A++KE+EKIKLLLLGAGESGKST+FKQMKIL+GV++DEEK+QI PV
Sbjct:   20 KEVEAIAAEAYRKEREKIKLLLLGAGESGKSTVFKQMKILYGVMTDEEKRQIRPV 74
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BLAST of mRNA_H-paniculata_contig26955.7377.1 vs. uniprot
Match: A0A7S2XUR0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUR0_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 8.390e-16
Identity = 42/57 (73.68%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    4 TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKILFG-VVSDEEKKQITPV 171
            +KEV+A N  AF+KEQEKIKLLLLGAGESGKSTIFKQMK+L+G  ++D+E++QITPV
Sbjct:   19 SKEVDALNEEAFKKEQEKIKLLLLGAGESGKSTIFKQMKVLYGDKLTDDERRQITPV 75
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BLAST of mRNA_H-paniculata_contig26955.7377.1 vs. uniprot
Match: W7U751_9STRA (G-protein complex alpha subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U751_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.200e-15
Identity = 42/57 (73.68%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    4 TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKILFGVVSD-EEKKQITPV 171
            +K+V+ ANAAAF+KEQEKIKLLLLGAGESGKSTIFKQMK+L+G  +  E+KK +TPV
Sbjct:   19 SKDVDQANAAAFKKEQEKIKLLLLGAGESGKSTIFKQMKLLYGAGTTLEDKKMMTPV 75
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BLAST of mRNA_H-paniculata_contig26955.7377.1 vs. uniprot
Match: A0A835YQV5_9STRA (GPA1, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQV5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.100e-14
Identity = 37/53 (69.81%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:   13 VEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKILFGVVSDEEKKQITPV 171
            ++A  AA F+KEQEK+KLLLLGAGESGKSTIFKQMKIL GV++DE+++ +TP+
Sbjct:   22 IDAKAAADFRKEQEKVKLLLLGAGESGKSTIFKQMKILHGVITDEDRRLLTPI 74
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BLAST of mRNA_H-paniculata_contig26955.7377.1 vs. uniprot
Match: M9NY12_9STRA (G-protein alpha subunit (Fragment) n=15 Tax=Phytophthora TaxID=4783 RepID=M9NY12_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.890e-14
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    4 TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKILFGV-VSDEEKKQITPV 171
            ++E+EA N  A + EQEK+KLLLLGAGESGKST+FKQMKIL+G  +++EEK+  TP+
Sbjct:   18 SREIEAKNEEAHRVEQEKVKLLLLGAGESGKSTVFKQMKILYGAALTEEEKRHCTPI 74
[Close]
BLAST of mRNA_H-paniculata_contig26955.7377.1 vs. uniprot
Match: A0A835ZE70_9STRA (GPA1, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE70_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.020e-14
Identity = 37/53 (69.81%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:   13 VEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKILFGVVSDEEKKQITPV 171
            ++A  AA F+KEQEK+KLLLLGAGESGKSTIFKQMKIL GV+++E+++ +TPV
Sbjct:   23 IDAKAAADFRKEQEKVKLLLLGAGESGKSTIFKQMKILHGVITEEDRRLMTPV 75
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BLAST of mRNA_H-paniculata_contig26955.7377.1 vs. uniprot
Match: F0WI40_9STRA (G protein alpha subunit putative n=3 Tax=Albugo TaxID=65356 RepID=F0WI40_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.760e-13
Identity = 37/57 (64.91%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    4 TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKILFGV-VSDEEKKQITPV 171
            +KE++A N  A + EQEK+KLLLLGAGESGKST+FKQMK+L+G  +SD+EK+Q TP+
Sbjct:   19 SKELDAKNEQAHRAEQEKVKLLLLGAGESGKSTVFKQMKLLYGAPLSDDEKRQSTPI 75
[Close]
BLAST of mRNA_H-paniculata_contig26955.7377.1 vs. uniprot
Match: A0A662XST8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XST8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.240e-13
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    4 TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKILFGV-VSDEEKKQITPV 171
            ++E+EA N  A + EQEK+KLLLLGAGESGKST+FKQMKIL+G  +++EEK+  TP+
Sbjct:   19 SREIEAKNEEAHRVEQEKVKLLLLGAGESGKSTVFKQMKILYGAALTEEEKRHCTPI 75
[Close]
BLAST of mRNA_H-paniculata_contig26955.7377.1 vs. uniprot
Match: T0QTL4_SAPDV (Uncharacterized protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QTL4_SAPDV)

HSP 1 Score: 70.5 bits (171), Expect = 7.190e-13
Identity = 36/57 (63.16%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    4 TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKILFGV-VSDEEKKQITPV 171
            ++E++ AN  A ++EQEK+KLLLLGAGESGKSTIFKQMK+L+G+ ++DEEK+  TP+
Sbjct:   18 SRELDMANEEAHRQEQEKVKLLLLGAGESGKSTIFKQMKLLYGMPLTDEEKRHCTPI 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26955.7377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP05_ECTSI3.130e-2396.43GPA1, alpha subunit of a heterotrimeric G protein ... [more]
A0A836CAY4_9STRA3.210e-1778.18GPA1, alpha subunit of a heterotrimeric G protein ... [more]
A0A7S2XUR0_9STRA8.390e-1673.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7U751_9STRA4.200e-1573.68G-protein complex alpha subunit n=1 Tax=Nannochlor... [more]
A0A835YQV5_9STRA1.100e-1469.81GPA1, alpha subunit of a heterotrimeric G protein ... [more]
M9NY12_9STRA1.890e-1463.16G-protein alpha subunit (Fragment) n=15 Tax=Phytop... [more]
A0A835ZE70_9STRA4.020e-1469.81GPA1, alpha subunit of a heterotrimeric G protein ... [more]
F0WI40_9STRA2.760e-1364.91G protein alpha subunit putative n=3 Tax=Albugo Ta... [more]
A0A662XST8_9STRA4.240e-1363.16Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
T0QTL4_SAPDV7.190e-1363.16Uncharacterized protein n=2 Tax=Saprolegniaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26955contigH-paniculata_contig26955:1164..2061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue1.5e-19
Seed eggNOG ortholog2880.D7FP05
Preferred nameGPA1
KEGG koko:K04534,ko:K04630
KEGG Pathwayko04015,ko04022,ko04024,ko04062,ko04071,ko04261,ko04360,ko04371,ko04540,ko04611,ko04670,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04914,ko04915,ko04916,ko04921,ko04923,ko04924,ko04926,ko04934,ko04971,ko05012,ko05030,ko05032,ko05034,ko05133,ko05142,ko05145,ko05200,map04015,map04022,map04024,map04062,map04071,map04261,map04360,map04371,map04540,map04611,map04670,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04914,map04915,map04916,map04921,map04923,map04924,map04926,map04934,map04971,map05012,map05030,map05032,map05034,map05133,map05142,map05145,map05200
KEGG ModuleM00695
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.G-protein beta/gamma-subunit complex binding
EggNOG OGsKOG0082@1,KOG0082@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04031,ko04147
Exons2
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929810.129928-CDS-H-paniculata_contig26955:1163..12831622929810.129928-CDS-H-paniculata_contig26955:1163..1283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26955 1164..1283 +
1691481021.0256085-CDS-H-paniculata_contig26955:1163..12831691481021.0256085-CDS-H-paniculata_contig26955:1163..1283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26955 1164..1283 +
1622929810.1455414-CDS-H-paniculata_contig26955:2010..20611622929810.1455414-CDS-H-paniculata_contig26955:2010..2061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26955 2011..2061 +
1691481021.0384364-CDS-H-paniculata_contig26955:2010..20611691481021.0384364-CDS-H-paniculata_contig26955:2010..2061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26955 2011..2061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26955.7377.1prot_H-paniculata_contig26955.7377.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26955 1164..2061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26955.7377.1

>prot_H-paniculata_contig26955.7377.1 ID=prot_H-paniculata_contig26955.7377.1|Name=mRNA_H-paniculata_contig26955.7377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
QTKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKILFGVVSDEE
KKQITPV
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mRNA from alignment at H-paniculata_contig26955:1164..2061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26955.7377.1 ID=mRNA_H-paniculata_contig26955.7377.1|Name=mRNA_H-paniculata_contig26955.7377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=898bp|location=Sequence derived from alignment at H-paniculata_contig26955:1164..2061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACAAAGGAGGTGGAAGCAGCCAATGCCGCGGCGTTTCAAAAGGAGCA
AGAGAAGATCAAGCTGTTGCTCTTGGGGGCTGGCGAGTCTGGAAAATCGA
CAATTTTCAAGCAGATGAAGGTAAGAAGCGAGTGTTTGCGAATGTCTGTG
TCCGTGTCCGTGTCTGTGTGTGTAAGCTTTGATTTGGTCATTCCTGTATG
GCTAATATTACGGAGGAACATCATAATCAGGAGCAAATTAGAAAATTGAC
ATTTTGAGGTGTAACTAACTCATGCAATACGACATGCACCAATCGGTTGC
TGCATGCCTGTGCAAGTGTTCTAAGAGTGTGTTTTTGTTTCCAGCTAGAA
GCGAAAATGTGTAGACCAACGGGGGAAAAAACTATTTATATATCAGTTTC
CCAAAAAAACAAGAAAAAAACGCTCCTGATTATTATGTTCCTCCGTAATA
GTGAAGTACTGGTCCCGAATCCTTTCCGTCCACCTGCATCAAATTGGCGA
TGCAAAAGCGACATTTCCTTTTTGATATTCGAAAATTGTGAAAAAGCGAG
TCGTTTTGTAGCGAAAATTTGGTGCAGGGGAAATGGTGCACCTACTGTAG
CTTGCTTACTATGAGCTGTATTAGACTAATTTTTAATCCCAGCTTCGGAC
TGGAGATTCCGATAGGAAAACGGATCTGGCATGAAAAGAATCAAACAGAA
TGTAGGACAGTTCACGTGCTTCCTGTACCCGTTGTTAAGCCTACATTAAT
CTTATTCTCCAGTCCCCACCCTAACCTTGACCTTAAACGCTAACCCCTGT
CCCTCTTCCCTCTTGTGTCTCTCTCTTTTTGTTCGTGCTGATGAAAGATC
CTTTTTGGTGTTGTATCGGACGAGGAGAAGAAGCAGATAACACCTGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig26955:1164..2061+

>mRNA_H-paniculata_contig26955.7377.1 ID=mRNA_H-paniculata_contig26955.7377.1|Name=mRNA_H-paniculata_contig26955.7377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig26955:1164..2061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACAAAGGAGGTGGAAGCAGCCAATGCCGCGGCGTTTCAAAAGGAGCA
AGAGAAGATCAAGCTGTTGCTCTTGGGGGCTGGCGAGTCTGGAAAATCGA
CAATTTTCAAGCAGATGAAGCAGACAAAGGAGGTGGAAGCAGCCAATGCC
GCGGCGTTTCAAAAGGAGCAAGAGAAGATCAAGCTGTTGCTCTTGGGGGC
TGGCGAGTCTGGAAAATCGACAATTTTCAAGCAGATGAAGATCCTTTTTG
GTGTTGTATCGGACGAGGAGAAGAAGCAGATAACACCTGTCATCCTTTTT
GGTGTTGTATCGGACGAGGAGAAGAAGCAGATAACACCTGTC
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