mRNA_H-paniculata_contig26947.7373.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26947.7373.1
Unique NamemRNA_H-paniculata_contig26947.7373.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26947.7373.1 vs. uniprot
Match: A0A6H5K0N2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0N2_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 8.630e-17
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:    1 FANLQAAILCNQTACYLKIGDGPLAMEAADRASEIMSTV-DSAAGRKAAYRRACALEAVGEWDESRAVFKRVMAVD 225
            F +LQ A+LCNQ AC+LK+G    A+ AA+RAS + +   D  AG KAAYRRACALEAVG+W E+R  F+ V+ VD
Sbjct:  452 FVDLQVAVLCNQAACFLKMGQALSALAAAERASSLKAVAADCPAGIKAAYRRACALEAVGDWGEARRAFRNVLDVD 527
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26947.7373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0N2_9PHAE8.630e-1756.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26947contigH-paniculata_contig26947:2818..3042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue2.6e-14
Seed eggNOG ortholog2880.D8LFT5
KEGG rclassRC00022,RC00929,RC02834,RC02880
KEGG koko:K00281,ko:K09571
KEGG ReactionR01221,R03425
KEGG Pathwayko00260,ko00630,ko01100,ko01110,ko01130,ko01200,ko04915,map00260,map00630,map01100,map01110,map01130,map01200,map04915
KEGG ModuleM00532
Hectar predicted targeting categoryother localisation
EggNOG free text desc.FK506 binding
EggNOG OGsCOG0545@1,KOG0543@2759
EC1.4.4.2,5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03110
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929809.7267845-CDS-H-paniculata_contig26947:2817..30421622929809.7267845-CDS-H-paniculata_contig26947:2817..3042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26947 2818..3042 -
1691481020.8376987-CDS-H-paniculata_contig26947:2817..30421691481020.8376987-CDS-H-paniculata_contig26947:2817..3042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26947 2818..3042 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26947.7373.1prot_H-paniculata_contig26947.7373.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26947 2818..3042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26947.7373.1

>prot_H-paniculata_contig26947.7373.1 ID=prot_H-paniculata_contig26947.7373.1|Name=mRNA_H-paniculata_contig26947.7373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
FANLQAAILCNQTACYLKIGDGPLAMEAADRASEIMSTVDSAAGRKAAYR
RACALEAVGEWDESRAVFKRVMAVD
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mRNA from alignment at H-paniculata_contig26947:2818..3042-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26947.7373.1 ID=mRNA_H-paniculata_contig26947.7373.1|Name=mRNA_H-paniculata_contig26947.7373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at H-paniculata_contig26947:2818..3042- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGCCAACTTACAAGCAGCAATTCTGTGCAATCAGACCGCTTGCTACCT
CAAGATCGGAGACGGACCTTTGGCGATGGAAGCTGCCGACCGCGCGTCGG
AAATAATGTCTACGGTCGATTCGGCCGCCGGGAGAAAAGCTGCCTACCGT
CGAGCATGCGCACTTGAGGCCGTTGGGGAGTGGGACGAGTCTCGCGCAGT
GTTCAAACGCGTTATGGCAGTGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig26947:2818..3042-

>mRNA_H-paniculata_contig26947.7373.1 ID=mRNA_H-paniculata_contig26947.7373.1|Name=mRNA_H-paniculata_contig26947.7373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig26947:2818..3042- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGCCAACTTACAAGCAGCAATTCTGTGCAATCAGACCGCTTGCTACCT
CAAGATCGGAGACGGACCTTTGGCGATGGAAGCTGCCGACCGCGCGTCGG
AAATAATGTCTACGGTCGATTCGGCCGCCGGGAGAAAAGCTGCCTACCGT
CGAGCATGCGCACTTGAGGCCGTTGGGGAGTGGGACGAGTCTCGCGCAGT
GTTCAAACGCGTTATGGCAGTGGATTTTGCCAACTTACAAGCAGCAATTC
TGTGCAATCAGACCGCTTGCTACCTCAAGATCGGAGACGGACCTTTGGCG
ATGGAAGCTGCCGACCGCGCGTCGGAAATAATGTCTACGGTCGATTCGGC
CGCCGGGAGAAAAGCTGCCTACCGTCGAGCATGCGCACTTGAGGCCGTTG
GGGAGTGGGACGAGTCTCGCGCAGTGTTCAAACGCGTTATGGCAGTGGAT
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