prot_H-paniculata_contig26940.7372.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig26940.7372.1
Unique Nameprot_H-paniculata_contig26940.7372.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length128
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26940.7372.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002867IBR domainSMARTSM00647ibrneu5coord: 25..90
e-value: 6.6E-9
score: 45.6
IPR002867IBR domainPFAMPF01485IBRcoord: 25..88
e-value: 2.9E-10
score: 40.2
NoneNo IPR availableGENE3D2.20.25.20coord: 42..110
e-value: 2.2E-5
score: 26.1
NoneNo IPR availablePANTHERPTHR11685:SF292RING-TYPE E3 UBIQUITIN TRANSFERASEcoord: 2..124
NoneNo IPR availablePROSITEPS51873TRIADcoord: 1..127
score: 14.827
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 25..90
IPR031127E3 ubiquitin ligase RBR familyPANTHERPTHR11685RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAININGcoord: 2..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26940contigH-paniculata_contig26940:488..871 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26940.7372.1mRNA_H-paniculata_contig26940.7372.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig26940 488..871 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig26940.7372.1 ID=prot_H-paniculata_contig26940.7372.1|Name=mRNA_H-paniculata_contig26940.7372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
LVCPNCGTPYSPEELQQILDPGTRERLDRLHLLSLVNRDPQRCWCPNREC
GAPVDLELRKSFGSRRSAKCGTCETEFCRRCGELPHRGNCPREKSYTEWF
NNEQLRGNSDGVRPCPTCHHHIEKRGA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002867IBR_dom
IPR031127E3_UB_ligase_RBR