mRNA_H-paniculata_contig26940.7372.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26940.7372.1
Unique NamemRNA_H-paniculata_contig26940.7372.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26940.7372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26940contigH-paniculata_contig26940:488..871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue7.2e-09
Seed eggNOG ortholog2903.EOD37526
KEGG koko:K11968
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein polyubiquitination
EggNOG OGsKOG1812@1,KOG1812@2759
EC2.3.2.31
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929809.680002-CDS-H-paniculata_contig26940:487..8711622929809.680002-CDS-H-paniculata_contig26940:487..871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26940 488..871 +
1691481020.8267236-CDS-H-paniculata_contig26940:487..8711691481020.8267236-CDS-H-paniculata_contig26940:487..871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26940 488..871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26940.7372.1prot_H-paniculata_contig26940.7372.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26940 488..871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26940.7372.1

>prot_H-paniculata_contig26940.7372.1 ID=prot_H-paniculata_contig26940.7372.1|Name=mRNA_H-paniculata_contig26940.7372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
LVCPNCGTPYSPEELQQILDPGTRERLDRLHLLSLVNRDPQRCWCPNREC
GAPVDLELRKSFGSRRSAKCGTCETEFCRRCGELPHRGNCPREKSYTEWF
NNEQLRGNSDGVRPCPTCHHHIEKRGA*
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mRNA from alignment at H-paniculata_contig26940:488..871+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26940.7372.1 ID=mRNA_H-paniculata_contig26940.7372.1|Name=mRNA_H-paniculata_contig26940.7372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=384bp|location=Sequence derived from alignment at H-paniculata_contig26940:488..871+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGTCTGCCCGAACTGTGGAACACCGTATTCACCCGAAGAATTGCAGCA
AATCCTAGACCCTGGAACACGCGAGCGCCTGGACAGACTGCATCTCCTCT
CCTTGGTCAATAGAGACCCGCAGCGATGCTGGTGCCCCAACCGCGAATGC
GGTGCCCCAGTGGACCTAGAACTGAGGAAGTCTTTCGGGTCCAGGAGAAG
CGCCAAGTGCGGGACGTGCGAGACCGAGTTCTGCCGGCGGTGTGGGGAGT
TGCCGCACCGGGGCAATTGCCCCCGAGAGAAGTCTTATACAGAGTGGTTC
AACAACGAGCAGCTACGAGGCAATAGCGATGGGGTGCGACCTTGTCCGAC
GTGCCATCACCACATCGAGAAACGAGGTGCATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig26940:488..871+

>mRNA_H-paniculata_contig26940.7372.1 ID=mRNA_H-paniculata_contig26940.7372.1|Name=mRNA_H-paniculata_contig26940.7372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig26940:488..871+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGTCTGCCCGAACTGTGGAACACCGTATTCACCCGAAGAATTGCAGCA
AATCCTAGACCCTGGAACACGCGAGCGCCTGGACAGACTGCATCTCCTCT
CCTTGGTCAATAGAGACCCGCAGCGATGCTGGTGCCCCAACCGCGAATGC
GGTGCCCCAGTGGACCTAGAACTGAGGAAGTCTTTCGGGTCCAGGAGAAG
CGCCAAGTGCGGGACGTGCGAGACCGAGTTCTGCCGGCGGTGTGGGGAGT
TGCCGCACCGGGGCAATTGCCCCCGAGAGAAGTCTTATACAGAGTGGTTC
AACAACGAGCAGCTACGAGGCAATAGCGATGGGGTGCGACCTTGTCCGAC
GTGCCATCACCACATCGAGAAACGAGGTGCATAATTGGTCTGCCCGAACT
GTGGAACACCGTATTCACCCGAAGAATTGCAGCAAATCCTAGACCCTGGA
ACACGCGAGCGCCTGGACAGACTGCATCTCCTCTCCTTGGTCAATAGAGA
CCCGCAGCGATGCTGGTGCCCCAACCGCGAATGCGGTGCCCCAGTGGACC
TAGAACTGAGGAAGTCTTTCGGGTCCAGGAGAAGCGCCAAGTGCGGGACG
TGCGAGACCGAGTTCTGCCGGCGGTGTGGGGAGTTGCCGCACCGGGGCAA
TTGCCCCCGAGAGAAGTCTTATACAGAGTGGTTCAACAACGAGCAGCTAC
GAGGCAATAGCGATGGGGTGCGACCTTGTCCGACGTGCCATCACCACATC
GAGAAACGAGGTGCATAA
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