mRNA_H-paniculata_contig2694.7371.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2694.7371.1
Unique NamemRNA_H-paniculata_contig2694.7371.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2694.7371.1 vs. uniprot
Match: D8LBH8_ECTSI (Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBH8_ECTSI)

HSP 1 Score: 457 bits (1177), Expect = 1.820e-156
Identity = 234/283 (82.69%), Postives = 247/283 (87.28%), Query Frame = 1 
Query:   82 AVSCAAGVQAFVAPMTNAGAAATRNIARPQQHQXXXXXXSSSIRMMAAKDNAYHKKDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTQDNYEATIGKMRDELAAATIA 930
            A +C    QAFV P      A+TR+              SSS+ M A  +NAYHKKDFWIAPSILSADMAKLG+EVDNAM+AGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVT PIDVHLMVSPVDRIVGDFA+AGASFITFHPEASPHVDRTL LIKS+GCKAGLVFNPATPLDHAKYVLDK+DIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRT++NY+ TI KMR ELA ATIA
Sbjct:    9 AFACVGASQAFVVPTATVSGASTRHT-------------SSSLTMAA--ENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAGLVFNPATPLDHAKYVLDKVDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTEENYKETIDKMRSELADATIA 276
[Close]
BLAST of mRNA_H-paniculata_contig2694.7371.1 vs. uniprot
Match: A0A835YRZ4_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ4_9STRA)

HSP 1 Score: 399 bits (1026), Expect = 1.220e-133
Identity = 201/243 (82.72%), Postives = 219/243 (90.12%), Query Frame = 1 
Query:  199 SSSIRMMAAKDNAYHKKDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTQDNYEATIGKMRDELAAATI 927
            +SS+RM    +NA+H+KDF IAPSILSADMAKLGEEVDNAMAAGAD+VHFDVMDNHYVPNLTIGPLVCK LR+HGV   IDVHLMVSPVDRIVGDFA+AGAS+ITFHPEASPHVDRTLQLIKS GCK+GLVFNPATPLD AKYVLDK+DIILLMSVNPGFGGQ+FIP+TLDKLREAR MIDESG+DIRLE+DGG    NIKEIAEAGADMFVAGSA+F NPRT + Y  TI K+R ELAAA I
Sbjct:   29 TSSLRMA---NNAWHRKDFQIAPSILSADMAKLGEEVDNAMAAGADVVHFDVMDNHYVPNLTIGPLVCKALRNHGVKNDIDVHLMVSPVDRIVGDFAEAGASYITFHPEASPHVDRTLQLIKSTGCKSGLVFNPATPLDFAKYVLDKVDIILLMSVNPGFGGQAFIPATLDKLREARAMIDESGFDIRLEIDGGVTQNNIKEIAEAGADMFVAGSAVFKNPRTVEAYTDTITKLRAELAAAQI 268
[Close]
BLAST of mRNA_H-paniculata_contig2694.7371.1 vs. uniprot
Match: W7TD18_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD18_9STRA)

HSP 1 Score: 390 bits (1001), Expect = 5.280e-130
Identity = 192/224 (85.71%), Postives = 205/224 (91.52%), Query Frame = 1 
Query:  244 KKDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTQDNYEATIGKMRDELA 915
            KKDFWIAPSILSAD AKLG+EVDN +AAGADIVHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVDRI+ DFADAGASFITFHPEA+ H+DRTLQLIKS GCK+GLVFNPATPL  A++VLDK+DIILLMSVNPGFGGQSFIP TL KL+EARKMIDESGYDIRLEVDGG GVANIK+IAEAGAD FVAGSAI  NPRTQD Y+ATI  MR ELA
Sbjct:   40 KKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELA 263
[Close]
BLAST of mRNA_H-paniculata_contig2694.7371.1 vs. uniprot
Match: F0YLQ5_AURAN (Ribulose-phosphate 3-epimerase n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLQ5_AURAN)

HSP 1 Score: 382 bits (980), Expect = 1.110e-126
Identity = 189/242 (78.10%), Postives = 212/242 (87.60%), Query Frame = 1 
Query:  202 SSIRMMAAKDNAYHKKDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTQDNYEATIGKMRDELAAATI 927
            SS+RM   + +    KDF IAPSILSAD A+LGEEV N+++AGAD+VHFDVMDNHYVPNLTIGP+VC  LR HGVT PIDVHLMVSPVDRIVGDFADAGAS+ITFHPEASPHVDRTLQLI+  GCKAGLVFNPATPLD  KYV+DK+DIILLMSVNPGFGGQSFIP+TLDK REARK+ID SGYDIRLE+DGG   ANIKE+AEAG DMFVAGSAIF +PRT+++Y+ TI  MRDELAAA +
Sbjct:   32 SSMRMELIEPD----KDFLIAPSILSADFARLGEEVVNSLSAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVGDFADAGASYITFHPEASPHVDRTLQLIRGAGCKAGLVFNPATPLDILKYVMDKVDIILLMSVNPGFGGQSFIPATLDKAREARKLIDASGYDIRLEIDGGVSGANIKEVAEAGVDMFVAGSAIFRDPRTEEDYKVTIDAMRDELAAAKV 269
[Close]
BLAST of mRNA_H-paniculata_contig2694.7371.1 vs. uniprot
Match: A0A6S8QFJ5_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8QFJ5_9STRA)

HSP 1 Score: 380 bits (975), Expect = 6.080e-126
Identity = 186/228 (81.58%), Postives = 205/228 (89.91%), Query Frame = 1 
Query:  244 KKDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTQDNYEATIGKMRDELAAATI 927
            +KDF IAPSILSAD AKLG EVD ++AAGAD+VHFDVMDNHYVPNLTIGP+VC  LR HGVT PIDVHLMVSPVDRIV DFADAGAS+ITFHPEASPHVDRTLQLI+S GCK+GLVFNPATPLD  KYV+DK+DIILLMSVNPGFGGQ+FIP+TLDK REARKMIDESGYDIRLE+DGG   ANIKE+AEAG DMFVAGSAIF +PRT++ Y+ TI  MRDELAAA +
Sbjct:   41 EKDFLIAPSILSADFAKLGAEVDASLAAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVQDFADAGASYITFHPEASPHVDRTLQLIRSTGCKSGLVFNPATPLDILKYVMDKVDIILLMSVNPGFGGQAFIPATLDKAREARKMIDESGYDIRLEIDGGVSGANIKEVAEAGVDMFVAGSAIFRDPRTEEAYKKTIDAMRDELAAAKV 268
[Close]
BLAST of mRNA_H-paniculata_contig2694.7371.1 vs. uniprot
Match: L1JR28_GUITC (Ribulose-phosphate 3-epimerase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JR28_GUITC)

HSP 1 Score: 363 bits (932), Expect = 1.980e-119
Identity = 174/228 (76.32%), Postives = 197/228 (86.40%), Query Frame = 1 
Query:  247 KDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTQDNYEATIGKMRDELAAATIA 930
            KD+ IAPSILSAD AKLG+EVDN +AAGAD+VHFDVMDNHYVPNLTIGP+VCK LR+HGVT PIDVHLMV PVDRI+GDF DAGAS+ITFHPEAS H+DRTL +I+  GCKAGLV NPAT LD+ KYV+DKIDIILLMSVNPGFGGQ FIPS L+K +EARK+ID SGYDIRLE+DGG  V NIK++AE G DMFVAGSAI   PRTQD Y+ TI KMR +LA+A +A
Sbjct:   49 KDYLIAPSILSADFAKLGQEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALRNHGVTAPIDVHLMVQPVDRIIGDFIDAGASYITFHPEASNHIDRTLAMIRDGGCKAGLVLNPATSLDYCKYVMDKIDIILLMSVNPGFGGQKFIPSVLEKAKEARKLIDASGYDIRLEIDGGVTVDNIKQVAECGVDMFVAGSAILKEPRTQDAYKTTIDKMRQQLASAKVA 276
[Close]
BLAST of mRNA_H-paniculata_contig2694.7371.1 vs. uniprot
Match: A0A7S0YLA0_9CRYP (Ribulose-phosphate 3-epimerase n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0YLA0_9CRYP)

HSP 1 Score: 362 bits (929), Expect = 1.160e-118
Identity = 178/225 (79.11%), Postives = 194/225 (86.22%), Query Frame = 1 
Query:  253 FWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTQDNYEATIGKMRDELAAATI 927
            + IAPSILSAD AKLGEEVDN +AAGAD+VHFDVMDNHYVPNLTIGP VCK LRDHGVT PIDVHLMV PVDRI+GDF DAGAS+ITFHPEAS H+DR+LQLI+  GCK+GLVF PAT LD+AKYVLDK+DIILLMSVNPGFGGQ FI  TLDK REARKMIDESGYDIRLE+DGG G ANIK++AEAG DMFVAGSAI   PRTQD Y  TI  +R ELA A +
Sbjct:   72 YLIAPSILSADFAKLGEEVDNMLAAGADVVHFDVMDNHYVPNLTIGPGVCKALRDHGVTAPIDVHLMVDPVDRIIGDFIDAGASYITFHPEASNHIDRSLQLIRDGGCKSGLVFTPATSLDYAKYVLDKVDIILLMSVNPGFGGQKFIEGTLDKAREARKMIDESGYDIRLEIDGGVGEANIKKVAEAGVDMFVAGSAILKAPRTQDAYAKTIKTLRGELAKAEV 296
[Close]
BLAST of mRNA_H-paniculata_contig2694.7371.1 vs. uniprot
Match: A0A7S0M6B2_9CRYP (Ribulose-phosphate 3-epimerase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M6B2_9CRYP)

HSP 1 Score: 360 bits (924), Expect = 1.580e-118
Identity = 174/225 (77.33%), Postives = 197/225 (87.56%), Query Frame = 1 
Query:  247 KDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTQDNYEATIGKMRDELAAA 921
            KDF IAPSILSA+ AKLGEEVDN +AAGAD+VHFDVMDNHYVPNLTIGP VCK LRDHGVT PIDVHLMVSPVDRI+GDF DAGAS+ITFHPEA+ HVDR+L L+++ GCK+GLVFNP+T LD+ KYV+DK+DIILLMSVNPGFGGQ FIP+ LDK REARKMIDESG+DIRLE+DGG  V NIK++AEAG D FVAGSAI   PRT+D Y +TI +MR  LAAA
Sbjct:   25 KDFLIAPSILSANFAKLGEEVDNMLAAGADVVHFDVMDNHYVPNLTIGPGVCKALRDHGVTAPIDVHLMVSPVDRIIGDFVDAGASYITFHPEATNHVDRSLSLVRAAGCKSGLVFNPSTSLDYLKYVMDKVDIILLMSVNPGFGGQKFIPNVLDKAREARKMIDESGFDIRLEIDGGVTVDNIKDVAEAGVDFFVAGSAILKAPRTKDAYRSTINQMRTNLAAA 249
[Close]
BLAST of mRNA_H-paniculata_contig2694.7371.1 vs. uniprot
Match: A0A7S2E7A3_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E7A3_9STRA)

HSP 1 Score: 358 bits (919), Expect = 1.110e-117
Identity = 176/225 (78.22%), Postives = 196/225 (87.11%), Query Frame = 1 
Query:  247 KDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTQDNYEATIGKMRDELAAA 921
            KD+ IAPSILSAD AKLGEEVDN + AGAD+VHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVD  +GDF DAGAS+ITFHPEA+ HVDR+LQLIK+ GCKAGLVFNPAT LD A+YV+DK+DIILLMSVNPGFGGQ+FIP+TLDK R ARKMIDE+G D RLE+DGG  V NIKE+ EAG DMFVAGSAI   PRT + Y+ATI +MR ELAAA
Sbjct:   37 KDYLIAPSILSADFAKLGEEVDNVLEAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAAIGDFIDAGASYITFHPEATNHVDRSLQLIKAGGCKAGLVFNPATSLDIAEYVMDKLDIILLMSVNPGFGGQAFIPATLDKARLARKMIDEAGVDCRLEIDGGVKVDNIKEVCEAGVDMFVAGSAILKEPRTVEAYKATIDEMRKELAAA 261
[Close]
BLAST of mRNA_H-paniculata_contig2694.7371.1 vs. uniprot
Match: A0A7S2UWQ6_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWQ6_9STRA)

HSP 1 Score: 357 bits (917), Expect = 3.730e-117
Identity = 178/238 (74.79%), Postives = 203/238 (85.29%), Query Frame = 1 
Query:  202 SSIRMMAAKDNAYHKKDFWIAPSILSADMAKLGEEVDNAMAAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAGASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDIILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANIKEIAEAGADMFVAGSAIFNNPRTQDNYEATIGKMRDELA 915
            SS++M A     +  KD+ IAPSILSA+ AKLGEEVDN +AAGAD+VHFDVMDNHYVPNLTIGP+VCK L+DHGVT PIDVHLMV PVDRI+GDFADAGA +ITFHPEAS H+DR+L LIKS GCK+GLVFNPAT LD+AKYVLDK+DIILLMSVNPGFGGQSFIP   DK+++ARKMIDESGYDI+LE+DGG  V NIK+IAEAG DMFVAGSAI   PR +D Y  TI  MR++LA
Sbjct:   36 SSLKMGAD----FPDKDYLIAPSILSANFAKLGEEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALKDHGVTAPIDVHLMVDPVDRIIGDFADAGADYITFHPEASGHIDRSLGLIKSLGCKSGLVFNPATSLDYAKYVLDKVDIILLMSVNPGFGGQSFIP-IYDKIKQARKMIDESGYDIKLEIDGGVNVNNIKDIAEAGVDMFVAGSAILKEPRNKDAYAETIKTMREQLA 268
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2694.7371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBH8_ECTSI1.820e-15682.69Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus ... [more]
A0A835YRZ4_9STRA1.220e-13382.72Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema m... [more]
W7TD18_9STRA5.280e-13085.71Ribulose-phosphate 3-epimerase n=2 Tax=Monodopsida... [more]
F0YLQ5_AURAN1.110e-12678.10Ribulose-phosphate 3-epimerase n=2 Tax=Aureococcus... [more]
A0A6S8QFJ5_9STRA6.080e-12681.58Ribulose-phosphate 3-epimerase n=1 Tax=Pelagomonas... [more]
L1JR28_GUITC1.980e-11976.32Ribulose-phosphate 3-epimerase n=1 Tax=Guillardia ... [more]
A0A7S0YLA0_9CRYP1.160e-11879.11Ribulose-phosphate 3-epimerase n=2 Tax=Hemiselmis ... [more]
A0A7S0M6B2_9CRYP1.580e-11877.33Ribulose-phosphate 3-epimerase n=1 Tax=Cryptomonas... [more]
A0A7S2E7A3_9STRA1.110e-11778.22Ribulose-phosphate 3-epimerase n=2 Tax=Ditylum bri... [more]
A0A7S2UWQ6_9STRA3.730e-11774.79Ribulose-phosphate 3-epimerase n=1 Tax=Fibrocapsa ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2694contigH-paniculata_contig2694:15138..19849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.4
Seed ortholog evalue4.7e-104
Seed eggNOG ortholog44056.XP_009041362.1
KEGG rclassRC00540
KEGG koko:K01783
KEGG ReactionR01529
KEGG Pathwayko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007
Hectar predicted targeting categorychloroplast
EggNOG free text desc.ribulose-phosphate 3-epimerase activity
EggNOG OGsCOG0036@1,KOG3111@2759
Ec32 ortholog descriptionribulose-phosphate 3-epimerase
Ec32 orthologEc-27_003930.1
EC5.1.3.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons4
Model size1736
Cds size885
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2694.7371.1prot_H-paniculata_contig2694.7371.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2694 15186..18660 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929809.5527909-UTR-H-paniculata_contig2694:15137..151851622929809.5527909-UTR-H-paniculata_contig2694:15137..15185Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2694 15138..15185 +
1691481020.7658093-UTR-H-paniculata_contig2694:15137..151851691481020.7658093-UTR-H-paniculata_contig2694:15137..15185Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2694 15138..15185 +
1622929809.6123652-UTR-H-paniculata_contig2694:18660..186991622929809.6123652-UTR-H-paniculata_contig2694:18660..18699Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2694 18661..18699 +
1691481020.8107488-UTR-H-paniculata_contig2694:18660..186991691481020.8107488-UTR-H-paniculata_contig2694:18660..18699Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2694 18661..18699 +
1622929809.6302745-UTR-H-paniculata_contig2694:19085..198491622929809.6302745-UTR-H-paniculata_contig2694:19085..19849Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2694 19086..19849 +
1691481020.818294-UTR-H-paniculata_contig2694:19085..198491691481020.818294-UTR-H-paniculata_contig2694:19085..19849Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2694 19086..19849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929809.5688314-CDS-H-paniculata_contig2694:15185..157201622929809.5688314-CDS-H-paniculata_contig2694:15185..15720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2694 15186..15720 +
1691481020.7829506-CDS-H-paniculata_contig2694:15185..157201691481020.7829506-CDS-H-paniculata_contig2694:15185..15720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2694 15186..15720 +
1622929809.5850854-CDS-H-paniculata_contig2694:17405..175901622929809.5850854-CDS-H-paniculata_contig2694:17405..17590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2694 17406..17590 +
1691481020.7948513-CDS-H-paniculata_contig2694:17405..175901691481020.7948513-CDS-H-paniculata_contig2694:17405..17590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2694 17406..17590 +
1622929809.5994833-CDS-H-paniculata_contig2694:18495..186601622929809.5994833-CDS-H-paniculata_contig2694:18495..18660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2694 18496..18660 +
1691481020.8029492-CDS-H-paniculata_contig2694:18495..186601691481020.8029492-CDS-H-paniculata_contig2694:18495..18660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2694 18496..18660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2694.7371.1

>prot_H-paniculata_contig2694.7371.1 ID=prot_H-paniculata_contig2694.7371.1|Name=mRNA_H-paniculata_contig2694.7371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=295bp
MVTSVTTVFVAAVSCAAGVQAFVAPMTNAGAAATRNIARPQQHQQQSSSP
SSSIRMMAAKDNAYHKKDFWIAPSILSADMAKLGEEVDNAMAAGADIVHF
DVMDNHYVPNLTIGPLVCKGLRDHGVTKPIDVHLMVSPVDRIVGDFADAG
ASFITFHPEASPHVDRTLQLIKSHGCKAGLVFNPATPLDHAKYVLDKIDI
ILLMSVNPGFGGQSFIPSTLDKLREARKMIDESGYDIRLEVDGGCGVANI
KEIAEAGADMFVAGSAIFNNPRTQDNYEATIGKMRDELAAATIA*
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mRNA from alignment at H-paniculata_contig2694:15138..19849+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2694.7371.1 ID=mRNA_H-paniculata_contig2694.7371.1|Name=mRNA_H-paniculata_contig2694.7371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4712bp|location=Sequence derived from alignment at H-paniculata_contig2694:15138..19849+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAACTGCTTCAGCCGCGCCCACCCTGAAACACCCACACATCGTCAACAT
GGTGACGTCAGTAACAACAGTATTTGTGGCAGCGGTGTCCTGCGCTGCGG
GAGTTCAGGCCTTCGTTGCTCCTATGACAAATGCTGGTGCGGCGGCCACC
CGGAATATCGCCAGACCGCAGCAGCACCAGCAGCAATCATCGTCGCCCTC
CTCGTCGATCAGGATGATGGCCGCAAAGGACAACGCCTACCACAAGAAGG
ATTTCTGGATTGCACCTTCCATACTTTCTGCGGACATGGCTAAGCTTGGC
GAGGAAGTCGACAACGCGATGGCGGCGGGGGCCGACATCGTGCACTTCGA
CGTGATGGACAACCACTACGTGCCCAACTTGACCATAGGGCCCCTTGTAT
GCAAGGGCCTCCGGGACCATGGCGTTACCAAACCGATAGACGTGCACTTG
ATGGTGTCTCCCGTTGACCGCATTGTGGGTGACTTTGCTGATGCTGGGGC
ATCGTTCATCACCTTCCACCCCGAGGCATCTCCACACGTTGACCGCACCC
TGCAGCTCATCAAGTCGCACGGGTGCAAGGCTGGTGAGTTATGATCAAAA
CAGAGGTGGATGGGGGGGAGGGATGATGACGATCAAGCGTGAGGGACGGC
TTACCAGGTAGTACTGCGAAATTCAATCTCACAGGTGAAATTTAGAGGCA
CCTACAGTTAAGGAGGCATGTCCCCGTCCTCATTGATTTAGATTGAGCCT
GCATGCGTCCTGGAAGATGGCACGGGGGTTGTTTGTTGGACGTTTCGTCT
GTACACGTATGTACTGGCTGCTCACGCCACCATTAAATTATAGTATACTG
TGCAACAGATCAGCAACTTATCAATAATGAATCTCTGCTACCTTCCCCGC
GGCTACTTCGTATCTCTATTATATCTAGATATTGAGGTTTTTCAGTTGAC
CGGAATTACATCGCGACGAAAACCGGAAGCGGTTCTCACTGAATTTCCAT
ATTCGTCGTTTCTGCAACTAGTTCGCTGTCGGGGTTTGCCAGACTTCTCG
ATTATGGATCATGTGAAAGAGCTTGTACTTTTTCGACCGTTTCTGCTTCG
ACAGAAACATCTAGCCCGTGCTAATATCCTTCCTTTTAAGTTGTTTTTTT
CGTGTTGAATAACACCCACGAGGTGCAAGTAGAAACGAACGAACACGTTT
CAGGTTACCCCCGTACAAAATGCGCGTTCCATCATAACATCAATTGCAGT
TATTTGGTGATGAGGTTGCGGCGTCCGACATTGTACCTTTGTTGGCGGGT
GATCCAAATTCTTCTGCCCTCCCCAATTACACAAAGATCGCAGCAGCGAG
GCGAATAGACTCGTACGATCCTTCGTCACGTAATATGCTCCAGATTTTTT
AATTCTGGTTCGATTATTGATATCGAGAGTTGTGAACTTGAATTGGAGCA
AGTTGAAACGCGGCCCCAAGCCAACGAGAATGTGCCGGCAAAGGTTGTAT
ATAGGGGGTGCGGGGTCCGTTATCTCTTTTTTTTCCTGTTCACTCGTGAG
GTCCTATCGCAACGCCAAATATTAGTCGTGTGTTAGTCGTACTCGAACGG
AAGACTCACGTATAGTACTTCTTGGTATTCTGTTTCACTGTTTTTGCTTA
CAGAACTACGGAGAGATGAGCCAGTCGGGGTTCGGTCATGATCCAAGTGT
GTGTGCTTTCGCTCCCGATCACCCTTCAGATATGCGGCTCTTTGACCGTT
GAAATCTGTTCTGGAATGAATAACCGACGGCAATGATGGTTCTAATGATA
GCGGCATGTACGACTCTAGACTTCATGACATCAAATTCAGTTGAATCAAA
CATCGGTCGAGGGCAGCCAACGTTCGCAAAAATAATTATAAGGTACAACG
AAATGCGAGTCTTCAAGAAAAAAAAAAGAATGAGGCCCGGAGCCCTCTTT
CCGTAAATTAACAAGAAGGCAAAAATGATGTTCCTGCCAGCAAACCAATC
GACATACGCGAACGGTCTAGGTTATTTTCGCGAGGCTTAATCGCACCCTC
GCTGGGTTGCCTTTCGGACGTATCCAGAAGCGAACGCTAACGGCGCAACG
CCCGTATTTTCCGTTCTGTACTGATATTTTCTCTAGTTGCAGGGAAAATA
GCCTTCTTGATGGAAACTGTGATAACCACAACAACCTTACTACCCCCTCT
CCTGTTGCCGCTTTTTACAACCCGTACCCTTTCCCCGGTTAAAATTCGTT
TCATTGCCCCGCCAAAAGGCCTCGTGTTCAACCCCGCCACCCCCCTGGAC
CACGCGAAGTATGTGTTGGACAAGATTGACATCATCTTGCTCATGTCGGT
CAACCCGGGCTTCGGTGGGCAGAGCTTCATCCCTAGCACCCTCGACAAGC
TGCGGGAGGCACGCAAGATGATCGATGAATCCGGATATGACATCCGCCTT
GAGGTGATGTTTTATCTGTCTGTCAGTGCGTTACCGCCAATTCGTCGTGG
AGATGCGGCACCATATACCCCGGCAGTTAATCGCCAATATCATGTGCATT
TTCCACGTAAAGAAACCGTTATTTATCGTTTGCGTCTGGTTTTGGCTGCT
GGTGGCGTTATCACCTACATGCGTGTGAAGAAGTTCGTCTTGCGAGCAAT
ATTGGGCGTCCGTGTTGAAGTAGTACAACGTAGCAGACGATGGCAGATGT
ACACTAATTGTACAAGGTCATCCACCTGTGGTGGTAGGTCAGGATGTGAC
TACTTAAAATACCTCTCAATTTCACTTTCGTCTTATTCCCCCTGCAGAGC
AGTGTTATCTTGTATATATCTTGACACGTATGCTTGGCAACTTTACAATG
CCGTGTCCAAGGGATGATGCATCGGCTTACACTTATCCTGAGCTACAAAA
TACAGGAACACGAGGCCCTTTCGTCGCCCTCGAAACTCAGTATGGGAGGA
GACGTTGGTGAAGTATATTTTATGACGAGAAAAAATTACATTGCACCCCG
AAACTAGCTCGTCCGTCGAAGGAGTGTCCTCATCATGTCTCGGAAGTTTC
ATTTAAGTCGGGAGCGCTAGTTCAATAACCTGATGTGGTCGGAGTGTCAC
ATTTTCTTTTTTTGTCATCGCGACTGTTGATGCCGGGAGCCCCTCAGACA
CCATCACATGCGTACCTCTACTGAGGCCGAACATGATGCAGGAGCATGCT
AAACCCGGACCGTCAGTAGAATATTTCGGCCGAAAGAATATCTCTCAGTG
TAACCTATCCCGAGGTGGAGCTCGACTGCGAAGTTCATTTGTTATTCCGT
GCGCCGGAGGCATATCTAACGTCCGTGTCCTGCAATCACATTTAATTATT
TGAATCAGGTTGACGGTGGTTGTGGTGTGGCCAACATCAAGGAAATTGCG
GAGGCTGGCGCGGACATGTTTGTTGCGGGATCTGCTATCTTCAACAACCC
TCGGACGCAGGACAACTACGAGGCAACTATTGGGAAGATGAGGGATGAGC
TAGCCGCGGCTACTATCGCTTAAATGATTCACGGAGACTGTCGTCCAGTG
ATTTTGATCGTGGTGAGTCCTTTATTCCACGTTGGTACCAGTTGTAGGTG
GTACCTTCTTGGCACGGCCGACAGATCCCTTGTCCGATCTGTTTATGTGC
AGCCATAACCGAAGTCGTATTCCTTGCTCGAAGAAAGTTGATTGTGGATG
CTGCCCATGGATCAAATCGAAAGTAACACTTCGTCCTTCACTGCAGAGAA
GAGTGAAAACCTGGTTCCAAACAGTAGCCCAGCCTAATCCACACTCGGTA
TACAGTTTAAAGAAAATTAATCGTCAGGGGTTGGATGCCATTATATCGAC
TCAAACCCACCTCAAACAAATTGTTAACTGACCTTTCTTCCTCCCTCCTG
TCTTGGCTGGCGTCCTCTGTGGGGTGCTTTTTGTGTTTTTCGAACCAGGC
GTTCATTTATCATGGCAGGGTCTTCATATCCAAGTTTTCACCGAGACGTT
CACCAGCGGGGTGAACTATGCCGCCTCATTAATTTACTCTTGATAGATGC
TTGTTGGTGGGCTTACTGCTGGGTCGGGGACGGGGGGGTTGTTTGTAGTG
GTTTCCGTCAATTTCAGGGAGCGTGGGATGGTGCACCCCTCTTGGTCGTG
CATTCCTTTTCGTGAATCGAAGCATGGTAGGAGTTTTGAACAACCGTCCT
TTCGGCAACAGGGTGGCTGGCGCAAGGATTGCTGTGTGCGATGAAGGCAA
TTGATATCGCTGCACATCTTTTGTTATATTTTTCGGGCGTCGGTACCTAT
GTTATGTAATCCTGATCCATTACAGACCCGGATTTTTGTCTGACACAAGA
TATTCGCAATTTCGGGCGCGAAGTCGCACGATACGCCATGAAATCACATG
AAGCGCTTCTTTGCCGAGACATGACGGTACTTGCTCAACAGCAGGTGGGT
GCCATACACCCGTGGATCACCATTAAGCCAGCCCAATCGTTGGTTACGTC
TACTGTCACGAGAAAATTTACCACTCAATCTTTTGAAGTGACCCTGATGT
GGGTGCCTGCAAGGCGTGATGAGCAGGTGGATTAACGTTTGTGTATGACC
AACACCGATGCCAGGGCTGGAAACTTCTTGGTCGCACTTCAGCATCAGCA
CCAATCCGTTTTATTTTTGTCGATGAACGCGCGCAGCCGTGGTTTCATTT
TTTTTCAAAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2694:15138..19849+

>mRNA_H-paniculata_contig2694.7371.1 ID=mRNA_H-paniculata_contig2694.7371.1|Name=mRNA_H-paniculata_contig2694.7371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1770bp|location=Sequence derived from alignment at H-paniculata_contig2694:15138..19849+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGACGTCAGTAACAACAGTATTTGTGGCAGCGGTGTCCTGCGCTGC
GGGAGTTCAGGCCTTCGTTGCTCCTATGACAAATGCTGGTGCGGCGGCCA
CCCGGAATATCGCCAGACCGCAGCAGCACCAGCAGCAATCATCGTCGCCC
TCCTCGTCGATCAGGATGATGGCCGCAAAGGACAACGCCTACCACAAGAA
GGATTTCTGGATTGCACCTTCCATACTTTCTGCGGACATGGCTAAGCTTG
GCGAGGAAGTCGACAACGCGATGGCGGCGGGGGCCGACATCGTGCACTTC
GACGTGATGGACAACCACTACGTGCCCAACTTGACCATAGGGCCCCTTGT
ATGCAAGGGCCTCCGGGACCATGGCGTTACCAAACCGATAGACGTGCACT
TGATGGTGTCTCCCGTTGACCGCATTGTGGGTGACTTTGCTGATGCTGGG
GCATCGTTCATCACCTTCCACCCCGAGGCATCTCCACACGTTGACCGCAC
CCTGCAGCTCATCAAGTCGCACGGGTGCAAGGCTGATGGTGACGTCAGTA
ACAACAGTATTTGTGGCAGCGGTGTCCTGCGCTGCGGGAGTTCAGGCCTT
CGTTGCTCCTATGACAAATGCTGGTGCGGCGGCCACCCGGAATATCGCCA
GACCGCAGCAGCACCAGCAGCAATCATCGTCGCCCTCCTCGTCGATCAGG
ATGATGGCCGCAAAGGACAACGCCTACCACAAGAAGGATTTCTGGATTGC
ACCTTCCATACTTTCTGCGGACATGGCTAAGCTTGGCGAGGAAGTCGACA
ACGCGATGGCGGCGGGGGCCGACATCGTGCACTTCGACGTGATGGACAAC
CACTACGTGCCCAACTTGACCATAGGGCCCCTTGTATGCAAGGGCCTCCG
GGACCATGGCGTTACCAAACCGATAGACGTGCACTTGATGGTGTCTCCCG
TTGACCGCATTGTGGGTGACTTTGCTGATGCTGGGGCATCGTTCATCACC
TTCCACCCCGAGGCATCTCCACACGTTGACCGCACCCTGCAGCTCATCAA
GTCGCACGGGTGCAAGGCTGGCCTCGTGTTCAACCCCGCCACCCCCCTGG
ACCACGCGAAGTATGTGTTGGACAAGATTGACATCATCTTGCTCATGTCG
GTCAACCCGGGCTTCGGTGGGCAGAGCTTCATCCCTAGCACCCTCGACAA
GCTGCGGGAGGCACGCAAGATGATCGATGAATCCGGATATGACATCCGCC
TTGAGGCCTCGTGTTCAACCCCGCCACCCCCCTGGACCACGCGAAGTATG
TGTTGGACAAGATTGACATCATCTTGCTCATGTCGGTCAACCCGGGCTTC
GGTGGGCAGAGCTTCATCCCTAGCACCCTCGACAAGCTGCGGGAGGCACG
CAAGATGATCGATGAATCCGGATATGACATCCGCCTTGAGGTTGACGGTG
GTTGTGGTGTGGCCAACATCAAGGAAATTGCGGAGGCTGGCGCGGACATG
TTTGTTGCGGGATCTGCTATCTTCAACAACCCTCGGACGCAGGACAACTA
CGAGGCAACTATTGGGAAGATGAGGGATGAGCTAGCCGCGGCTACTATCG
CTTAAGTTGACGGTGGTTGTGGTGTGGCCAACATCAAGGAAATTGCGGAG
GCTGGCGCGGACATGTTTGTTGCGGGATCTGCTATCTTCAACAACCCTCG
GACGCAGGACAACTACGAGGCAACTATTGGGAAGATGAGGGATGAGCTAG
CCGCGGCTACTATCGCTTAA
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