mRNA_H-paniculata_contig26932.7369.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26932.7369.1
Unique NamemRNA_H-paniculata_contig26932.7369.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26932.7369.1 vs. uniprot
Match: D8LQW5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW5_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 8.620e-28
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 EAGTSRGDSCQWSTAESCVVCFGEYAYGEHLCRLPCRHVYHAECIDEWLDGANHAWCPLCKLDLLSEQEHVAGPESDTRG 240
            E G + G S  WS+ ESC++CFGEYA G+ LCRLPCRH YHAECID WLDG  H+WCPLCK  LL   E   G ++D  G
Sbjct:  441 ERGMTGGLSELWSSGESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLLPPSEPRNGSDNDEIG 520
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BLAST of mRNA_H-paniculata_contig26932.7369.1 vs. uniprot
Match: A0A6H5KUH7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH7_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.850e-26
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:   34 WSTAESCVVCFGEYAYGEHLCRLPCRHVYHAECIDEWLDGANHAWCPLCKLDLLSEQE 207
            WS +ESC++CFGEYA G+ LCRLPCRH YHAECID WLD   H+WCPLCK  LL   E
Sbjct:   72 WSCSESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDSPGHSWCPLCKSSLLLPSE 129
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BLAST of mRNA_H-paniculata_contig26932.7369.1 vs. uniprot
Match: D8LSX3_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX3_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 4.760e-25
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:   37 STAESCVVCFGEYAYGEHLCRLPCRHVYHAECIDEWLDGANHAWCPLCKLDLLSEQEHV 213
            ST  SC+VCFG+Y YGE LCRL C H+YHA+CIDEWLDG NH WCPLCK D++S   ++
Sbjct:  247 STGGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDIMSTSGYL 305
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BLAST of mRNA_H-paniculata_contig26932.7369.1 vs. uniprot
Match: A0A6H5K661_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K661_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 7.340e-25
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:   37 STAESCVVCFGEYAYGEHLCRLPCRHVYHAECIDEWLDGANHAWCPLCKLDLLSEQEHV 213
            ST  SC+VCFG+Y YGE LCRL C H+YHA+CIDEWLDG NH WCPLCK D++S   ++
Sbjct:  254 STRGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDIISTSGYL 312
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BLAST of mRNA_H-paniculata_contig26932.7369.1 vs. uniprot
Match: D7FRQ0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ0_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.030e-22
Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:   22 DSCQWSTAESCVVCFGEYAYGEHLCRLPCRHVYHAECIDEWLDGANHAWCPLCKLDLLSEQEHVAGPESDTR 237
            DS +WST ++C+VCFG+Y  G+ L RLPCRHVYHA+CIDEWLD A    CPLCK DL     H   P+   R
Sbjct:  249 DSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDL----RHATPPDDPCR 316
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BLAST of mRNA_H-paniculata_contig26932.7369.1 vs. uniprot
Match: A0A6H5JEY0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY0_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 9.510e-22
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:   22 DSCQWSTAESCVVCFGEYAYGEHLCRLPCRHVYHAECIDEWLDGANHAWCPLCKLDLLSEQEHVAGPESDTR 237
            D+ +WST ++C+VCF +Y  G+ L RLPCRHVYHA+CIDEWLD A    CPLCK DL     H   P+  +R
Sbjct:  149 DTGEWSTGQACIVCFSDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDL----RHATPPDDRSR 216
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BLAST of mRNA_H-paniculata_contig26932.7369.1 vs. uniprot
Match: D7FRQ1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ1_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.460e-21
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:   13 SRGDSCQWSTAESCVVCFGEYAYGEHLCRLPCRHVYHAECIDEWLDGANHAWCPLCKLDLLSEQEHVAGPESDTR 237
            ++ DS +WST ++C+VCFG+Y  G+ L  LPCRHVYHA+CIDEWLD A    CPLCK DL     H   P+  +R
Sbjct:  339 AQSDSGEWSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDL----RHATPPDDRSR 409
[Close]
BLAST of mRNA_H-paniculata_contig26932.7369.1 vs. uniprot
Match: A0A7R9ZSU8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSU8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.060e-13
Identity = 29/54 (53.70%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   52 CVVCFGEYAYGEHLCRLPCRHVYHAECIDEWLDGANHAWCPLCKLDLLSEQEHV 213
            C +C GEY  GE+L  LPC+HVYHA+CI  W D  NH  CPLC  DL +   H 
Sbjct:  175 CSICLGEYEDGENLVSLPCKHVYHADCITSWTD--NHTRCPLCNFDLAAVTHHA 226
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BLAST of mRNA_H-paniculata_contig26932.7369.1 vs. uniprot
Match: UPI001035FBDA (E3 ubiquitin-protein ligase RHA2A-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001035FBDA)

HSP 1 Score: 66.6 bits (161), Expect = 4.660e-12
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   40 TAESCVVCFGEYAYGEHLCRLPCRHVYHAECIDEWLDGANHAWCPLCKLDLLSEQEHV 213
            +A  CVVC  +   GE + RL CRH +H EC+D WLD  N + CPLC+  L+SEQ  V
Sbjct:   76 SASDCVVCMSKLRDGEKVRRLACRHAFHKECLDGWLDHLNFS-CPLCRSPLVSEQRVV 132
[Close]
BLAST of mRNA_H-paniculata_contig26932.7369.1 vs. uniprot
Match: A0A251U2E9_HELAN (Putative RING-H2 finger A2A n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251U2E9_HELAN)

HSP 1 Score: 67.0 bits (162), Expect = 5.030e-12
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   52 CVVCFGEYAYGEHLCRLPCRHVYHAECIDEWLDGANHAWCPLCKLDLLSEQEHV 213
            CVVC   +A GEH+ +L CRHV+H EC D WLD  N   CPLC+  L+S++  V
Sbjct:  100 CVVCLSGFADGEHVRKLACRHVFHKECFDGWLDQLNFK-CPLCRSPLVSDERVV 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26932.7369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQW5_ECTSI8.620e-2860.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KUH7_9PHAE1.850e-2668.97RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LSX3_ECTSI4.760e-2566.10RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K661_9PHAE7.340e-2566.10RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FRQ0_ECTSI3.030e-2256.94RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JEY0_9PHAE9.510e-2254.17RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FRQ1_ECTSI2.460e-2153.33RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7R9ZSU8_9STRA1.060e-1353.70Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
UPI001035FBDA4.660e-1250.00E3 ubiquitin-protein ligase RHA2A-like n=1 Tax=Cam... [more]
A0A251U2E9_HELAN5.030e-1251.85Putative RING-H2 finger A2A n=2 Tax=Helianthus ann... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26932contigH-paniculata_contig26932:1302..3121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue5.5e-23
Seed eggNOG ortholog2880.D8LQW5
KEGG koko:K03257,ko:K15694
KEGG Pathwayko03013,map03013
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03019,ko04121,ko04147
Exons2
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929809.2162504-CDS-H-paniculata_contig26932:1301..14121622929809.2162504-CDS-H-paniculata_contig26932:1301..1412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26932 1302..1412 -
1691481020.6015506-CDS-H-paniculata_contig26932:1301..14121691481020.6015506-CDS-H-paniculata_contig26932:1301..1412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26932 1302..1412 -
1622929809.232138-CDS-H-paniculata_contig26932:2992..31211622929809.232138-CDS-H-paniculata_contig26932:2992..3121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26932 2993..3121 -
1691481020.6142316-CDS-H-paniculata_contig26932:2992..31211691481020.6142316-CDS-H-paniculata_contig26932:2992..3121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26932 2993..3121 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26932.7369.1prot_H-paniculata_contig26932.7369.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26932 1302..3121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26932.7369.1

>prot_H-paniculata_contig26932.7369.1 ID=prot_H-paniculata_contig26932.7369.1|Name=mRNA_H-paniculata_contig26932.7369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
EAGTSRGDSCQWSTAESCVVCFGEYAYGEHLCRLPCRHVYHAECIDEWLD
GANHAWCPLCKLDLLSEQEHVAGPESDTRG
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mRNA from alignment at H-paniculata_contig26932:1302..3121-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26932.7369.1 ID=mRNA_H-paniculata_contig26932.7369.1|Name=mRNA_H-paniculata_contig26932.7369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1820bp|location=Sequence derived from alignment at H-paniculata_contig26932:1302..3121- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCAGGAACTTCGAGGGGAGACTCGTGTCAGTGGTCGACGGCTGAATC
ATGCGTTGTGTGCTTCGGAGAGTATGCATACGGCGAACACCTATGCCGAT
TGCCCTGCCGACACGTCTACCATGCCGAGGTATGAGGTATTGCACGCTCT
CTGTGTTCGTGCTTGGGCAGGAATGTGGCCGCTGAACAGACGTGTGTATA
CTCACTTGTAGCCAGTTTTTGTGTCTGTTCGTTAATTTATGCAGCCATTT
GTCAGAAATGGTGTCCGTATTTTCAACTTAATGTCGAAACTGACGCCATT
TTTTTTTTTTTTTTTCCTTTTTTCCGAAATTTCACATGTAATAAAAAGAG
AGCCACTTTTTGACGATGGCGTCATTTCCATGTCGCGAAATTTGAATTAA
ACCACTAGGCAAATAATTCACCGTTTTTGGATATTAGCTCAACCCGTTAC
CGCCGCTGCACTGAAGAGAGGGAGGGGGAGAGGTACATCAGTAGCACTAA
GCTCTAACGCTAATATAACTACTCCCTTGTACTCATGTCAAGTGTGTGCA
GCTGGCTTCAAACCTGAGTTGTCTACACTTATCACCACACGGTTAGATCA
TGATCAATAAGGGGTACATGGGCCCGAATAAAAAATGGAGGGGAAAAATA
TGGTGGCGTTCAAAATGGCCCCTTTTGGGTATATTTCTAGTAAAATTATC
CCATCCATTATTCGCCACCGAGAATGCCACCCCCGACGTTGAAAGCGATC
GATGCTGCTCTCGCATCCACATCCAGTAGGTGGCTTGTGTCCTGATTACA
GCTTTCGCGAGGGTAGGCGCTTTTCAAAATTGGGGGTAGCCGATGCGCTC
CCCCCCGCTTCCCCCCCCCCCCCCCACCCCCCCCCCCGATGCACGTGTTT
CGTTGTTTATGGGTTAGCCTTGGGAAAACAAAATGTTGACACATGTTCAT
CCACATCTTTTGTCCGCGGTTGTCTGTACGTGTCCTTTCTCTTGTTGTAT
ACGAACAAACAGTGAGCGACCCGGTGTTGAGAGGGTGGTGTGCCACAAGG
CTCTGACCCCACTATATCGGGGCACCCCATAACATTGGTATAGGGGGGGT
CCCTCTATCATTCAGGCCGAGTCAATTGGTGGGGTACTGTATTTATTGAA
TAAGAATGATACCGTGAAATCCGTAGGTATTGGTATCACAGGGTTGCAAA
TATTTTTTTTCAAGCGTAATTTTCTCCAGAACAATGCCACGGGCACCGAA
TGGTGCACCGTTAGAAATATGTTGCGGGGATCTGTCGATTGAGGGGATCT
TTCGACCGCTTGATGTCTCCGTTTTTGGGATAGTCGTGCTTTTCAAACGT
TTGCACCACGCTTGTGCGATATCTCTGGGTTTTACGGTAAATCCGTTACC
GCATTTGGTGTGTGATATTTATCTGTTGAACATGCGTTCACCGCATGTTT
ATGCTTACATGTTTTGTGCAAATATACTTGTTGACCGATTTTGTGTTGCA
AATTAGATACCTTTACCTTGGTTGTTCATGCACAGATACGAGCATTCATA
GTCTTCATGTAAAATGCATGCGTTTCCGTCCCCTCTCTATCTTGTATACT
TGGTCCATTGATATGTTTGTGTCGTATAATACACTCATTCACCTTTTGTG
TATGGAAATATATATGTACAACCCCCCGCATCTTCTCTGTTCTATGCATC
CGTGTCCAGTGCATCGATGAGTGGCTGGATGGTGCGAACCACGCATGGTG
TCCCCTCTGCAAGCTAGATCTTCTATCAGAACAGGAACATGTCGCTGGAC
CTGAAAGCGATACACGCGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig26932:1302..3121-

>mRNA_H-paniculata_contig26932.7369.1 ID=mRNA_H-paniculata_contig26932.7369.1|Name=mRNA_H-paniculata_contig26932.7369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig26932:1302..3121- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCAGGAACTTCGAGGGGAGACTCGTGTCAGTGGTCGACGGCTGAATC
ATGCGTTGTGTGCTTCGGAGAGTATGCATACGGCGAACACCTATGCCGAT
TGCCCTGCCGACACGTCTACCATGCCGAGGAAGCAGGAACTTCGAGGGGA
GACTCGTGTCAGTGGTCGACGGCTGAATCATGCGTTGTGTGCTTCGGAGA
GTATGCATACGGCGAACACCTATGCCGATTGCCCTGCCGACACGTCTACC
ATGCCGAGTGCATCGATGAGTGGCTGGATGGTGCGAACCACGCATGGTGT
CCCCTCTGCAAGCTAGATCTTCTATCAGAACAGGAACATGTCGCTGGACC
TGAAAGCGATACACGCGGTTGCATCGATGAGTGGCTGGATGGTGCGAACC
ACGCATGGTGTCCCCTCTGCAAGCTAGATCTTCTATCAGAACAGGAACAT
GTCGCTGGACCTGAAAGCGATACACGCGGT
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