mRNA_H-paniculata_contig26908.7361.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26908.7361.1
Unique NamemRNA_H-paniculata_contig26908.7361.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26908.7361.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.840e-25
Identity = 59/142 (41.55%), Postives = 82/142 (57.75%), Query Frame = 1
Query:    1 TIVHIPGEQNSWGDLLSRWVQEPRMAPVTRVYMLPTQDEVEGGAMPTKKEVVASQAEAKEELAKAAAEF----GTAKCDDGGAYWVQHRGERVLWVPPRARQLHVRLLVCAHMGEACHRGVEATLNRLRRYCVWTTMEEDAK 414
            TI HI GE+N WGDLLSRWV  P ++  +    +P+  +     +P+K  +   Q   +  +    A F    G    DD G + V   G +VLW+P  AR + +RL++CAHM EA HRGV AT++RLR YC W+TM+ D K
Sbjct:  315 TIQHISGERNCWGDLLSRWVNVPAVSNRSAAVFMPSTPDCN---LPSKNAIREVQQTVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVK 453          
BLAST of mRNA_H-paniculata_contig26908.7361.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.980e-25
Identity = 59/142 (41.55%), Postives = 82/142 (57.75%), Query Frame = 1
Query:    1 TIVHIPGEQNSWGDLLSRWVQEPRMAPVTRVYMLPTQDEVEGGAMPTKKEVVASQAEAKEELAKAAAEF----GTAKCDDGGAYWVQHRGERVLWVPPRARQLHVRLLVCAHMGEACHRGVEATLNRLRRYCVWTTMEEDAK 414
            TI HI GE+N WGDLLSRWV  P ++  +    +P+  +     +P+K  +   Q   +  +    A F    G    DD G + V   G +VLW+P  AR + +RL++CAHM EA HRGV AT++RLR YC W+TM+ D K
Sbjct: 1091 TIQHISGERNCWGDLLSRWVNVPAVSNRSAAVFMPSTPDCN---LPSKNAIREVQQTVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVK 1229          
BLAST of mRNA_H-paniculata_contig26908.7361.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 9.380e-25
Identity = 66/142 (46.48%), Postives = 82/142 (57.75%), Query Frame = 1
Query:    1 TIVHIPGEQNSWGDLLSRWVQEPRMAPVTRVYMLPTQDEVEGGAMPTKKEVVASQAEAKEEL---AKAAAEF----GTAKCDDGGAYWVQHRGERVLWVPPRARQLHVRLLVCAHMGEACHRGVEATLNRLRRYCVWTTMEE 405
            TI HI GE+N WGDLLSRWV  P ++        P++ +    AMP+K+ V  +Q  A+ +L   A  A+ F    GTA  D  G + V   G  VLW+P +A  L VRL+VCAHM EA HRG  ATL RL  YC W  MEE
Sbjct: 1190 TIRHISGERNCWGDLLSRWVSVPSVSVRAAAVYAPSEPDA---AMPSKQVVRDAQQAARSKLGALAGPASSFSTAVGTATLDAEGLFRVGMNGRDVLWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEE 1328          
BLAST of mRNA_H-paniculata_contig26908.7361.1 vs. uniprot
Match: H3H7B6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7B6_PHYRM)

HSP 1 Score: 72.0 bits (175), Expect = 5.230e-12
Identity = 54/152 (35.53%), Postives = 73/152 (48.03%), Query Frame = 1
Query:    4 IVHIPGEQNSWGDLLSRW------------VQEPRMAPVTRVYMLPTQDEVEGGAMPTKKEVVASQAEAKEELAKAAAEFGTAKCDDGGAYWVQHRGERV-----LWVPPRARQLHVRLLVCAHMGEACHRGVEATLNRLRRYCVWTTMEED 408
            I H+PGE+N+WGDLLSRW            ++  R+A V RV  L   D V     P+++E+ A Q     + A AAA          G  W + R  ++     +W+PP + +L  RL V AH G + HRG  ATL  L     W TM  D
Sbjct:   23 IEHVPGEENAWGDLLSRWGAGPPLEATRTAIRAARLAVVERVSPLEEADFV----WPSEQEIRAVQ-----QAAGAAAH--------PGVQWNEERQLQMTSTGQVWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPD 157          
BLAST of mRNA_H-paniculata_contig26908.7361.1 vs. uniprot
Match: H3H555_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H555_PHYRM)

HSP 1 Score: 72.0 bits (175), Expect = 5.530e-12
Identity = 54/152 (35.53%), Postives = 73/152 (48.03%), Query Frame = 1
Query:    4 IVHIPGEQNSWGDLLSRW------------VQEPRMAPVTRVYMLPTQDEVEGGAMPTKKEVVASQAEAKEELAKAAAEFGTAKCDDGGAYWVQHRGERV-----LWVPPRARQLHVRLLVCAHMGEACHRGVEATLNRLRRYCVWTTMEED 408
            I H+PGE+N+WGDLLSRW            ++  R+A V RV  L   D V     P+++E+ A Q     + A AAA          G  W + R  ++     +W+PP + +L  RL V AH G + HRG  ATL  L     W TM  D
Sbjct:  382 IEHVPGEENAWGDLLSRWGAGPPLEATRTAIRAARLAVVERVSPLEEADFV----WPSEQEIRAVQ-----QAAGAAAH--------PGVQWNEERQLQMTSTGQVWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPD 516          
BLAST of mRNA_H-paniculata_contig26908.7361.1 vs. uniprot
Match: H3H4S7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4S7_PHYRM)

HSP 1 Score: 72.0 bits (175), Expect = 5.750e-12
Identity = 54/152 (35.53%), Postives = 73/152 (48.03%), Query Frame = 1
Query:    4 IVHIPGEQNSWGDLLSRW------------VQEPRMAPVTRVYMLPTQDEVEGGAMPTKKEVVASQAEAKEELAKAAAEFGTAKCDDGGAYWVQHRGERV-----LWVPPRARQLHVRLLVCAHMGEACHRGVEATLNRLRRYCVWTTMEED 408
            I H+PGE+N+WGDLLSRW            ++  R+A V RV  L   D V     P+++E+ A Q     + A AAA          G  W + R  ++     +W+PP + +L  RL V AH G + HRG  ATL  L     W TM  D
Sbjct: 1110 IEHVPGEENAWGDLLSRWGAGPPLEATRTAIRAARLAVVERVSPLEEADFV----WPSEQEIRAVQ-----QAAGAAAH--------PGVQWNEERQLQMTSTGQVWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPD 1244          
BLAST of mRNA_H-paniculata_contig26908.7361.1 vs. uniprot
Match: A0A6G0NLB6_9STRA (Reverse transcriptase domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NLB6_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.130e-11
Identity = 53/148 (35.81%), Postives = 70/148 (47.30%), Query Frame = 1
Query:    4 IVHIPGEQNSWGDLLSRWVQEP------------RMAPVTRVYMLPTQDEVEGGAMPTKKEV-VASQAEAKEELAKAAAEFGTAKCDDGGAYWVQHRGERVLWVPPRARQLHVRLLVCAHMGEACHRGVEATLNRLRRYCVWTTMEED 408
            I H+PGE N+WGD+LSRW   P            R+A V RV  L   + V     P++ E+    Q    +E A+AA        DD  A  +   G+  +W+PP A +L  RL V AH G + HRG + T   L    VW TM  D
Sbjct:  310 IEHVPGEVNTWGDMLSRWGAGPVLPAESSARRVARLAVVDRVTPLQEAEFV----WPSEGEIRTLHQDPQYQEQARAAG----VNWDDERALLLSPTGQ--VWIPPDATELQQRLCVIAHAGASGHRGAQTTAATLSEVFVWATMPAD 447          
BLAST of mRNA_H-paniculata_contig26908.7361.1 vs. uniprot
Match: A0A6G0RX23_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RX23_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.970e-10
Identity = 52/151 (34.44%), Postives = 68/151 (45.03%), Query Frame = 1
Query:    4 IVHIPGEQNSWGDLLSRW------------VQEPRMAPVTRVYMLPTQDEVEGGAMPTKKEVVASQAEAKEELAKAAAEFGTAKCDDGGAYWVQHR----GERVLWVPPRARQLHVRLLVCAHMGEACHRGVEATLNRLRRYCVWTTMEED 408
            I H+PGEQN WGDLLSRW            V+  R+A + RV  L   + V     PT+ E+   Q     ELA++A         D  AY    R     +  +W+P  A ++  RL V AH G + HRG + T   L     W TM  D
Sbjct:    7 IEHVPGEQNVWGDLLSRWGAGSTASSEQAAVRVTRLAVIERVSPLEDPEFV----WPTENEIRTLQ-----ELARSADPNDE---HDATAYDADRRLVVRADGQVWIPSTAVEMQQRLCVVAHAGASGHRGAQTTTTALSNLFYWRTMAAD 145          
BLAST of mRNA_H-paniculata_contig26908.7361.1 vs. uniprot
Match: A0A6A3W606_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3W606_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.180e-10
Identity = 52/151 (34.44%), Postives = 68/151 (45.03%), Query Frame = 1
Query:    4 IVHIPGEQNSWGDLLSRW------------VQEPRMAPVTRVYMLPTQDEVEGGAMPTKKEVVASQAEAKEELAKAAAEFGTAKCDDGGAYWVQHR----GERVLWVPPRARQLHVRLLVCAHMGEACHRGVEATLNRLRRYCVWTTMEED 408
            I H+PGEQN WGDLLSRW            V+  R+A + RV  L   + V     PT+ E+   Q     ELA++A         D  AY    R     +  +W+P  A ++  RL V AH G + HRG + T   L     W TM  D
Sbjct:  290 IEHVPGEQNVWGDLLSRWGAGSTASSEQAAVRVTRLAVIERVSPLEDPEFV----WPTENEIRTLQ-----ELARSADPNDE---HDATAYDADRRLVVRADGQVWIPSTAVEMQQRLCVVAHAGASGHRGAQTTTTALSNLFYWRTMAAD 428          
BLAST of mRNA_H-paniculata_contig26908.7361.1 vs. uniprot
Match: A0A6G0QZJ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QZJ3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.300e-10
Identity = 52/148 (35.14%), Postives = 72/148 (48.65%), Query Frame = 1
Query:    4 IVHIPGEQNSWGDLLSRW------------VQEPRMAPVTRVYMLPTQDEVEGGAMPTKKEVVASQAEAKEELAKAAAEFGTA-KCDDGGAYWVQHRGERVLWVPPRARQLHVRLLVCAHMGEACHRGVEATLNRLRRYCVWTTMEED 408
            I H+PGE+N WGDLLSRW            V+  R+A V RV  L   + V     P++ E+ ASQ     E A+A+ +  T  + DD     V   G+  +++P  A  L  RL V AH G + HRG  AT   L     W+++  D
Sbjct:  310 IEHVPGEENVWGDLLSRWGAGQVLEAHHGAVRVARLAVVQRVSPLEEPEFV----WPSESEIRASQ-----EAARASGQIMTGTQLDDERHLLVTRTGQ--VYIPDDAADLQQRLCVVAHAGASGHRGGRATQQALEAVFYWSSLGAD 446          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26908.7361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JCX8_9PHAE1.840e-2541.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE1.980e-2541.55Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE9.380e-2546.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
H3H7B6_PHYRM5.230e-1235.53Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3H555_PHYRM5.530e-1235.53Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3H4S7_PHYRM5.750e-1235.53Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6G0NLB6_9STRA6.130e-1135.81Reverse transcriptase domain-containing protein n=... [more]
A0A6G0RX23_9STRA3.970e-1034.44Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A6A3W606_9STRA4.180e-1034.44Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6G0QZJ3_9STRA7.300e-1035.14Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26908contigH-paniculata_contig26908:2950..3364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue3.7e-11
Seed eggNOG ortholog164328.Phyra85588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size415
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929808.410893-CDS-H-paniculata_contig26908:2949..33631622929808.410893-CDS-H-paniculata_contig26908:2949..3363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26908 2950..3363 +
1691481020.248221-CDS-H-paniculata_contig26908:2949..33631691481020.248221-CDS-H-paniculata_contig26908:2949..3363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26908 2950..3363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26908.7361.1prot_H-paniculata_contig26908.7361.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26908 2950..3363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26908.7361.1

>prot_H-paniculata_contig26908.7361.1 ID=prot_H-paniculata_contig26908.7361.1|Name=mRNA_H-paniculata_contig26908.7361.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
TIVHIPGEQNSWGDLLSRWVQEPRMAPVTRVYMLPTQDEVEGGAMPTKKE
VVASQAEAKEELAKAAAEFGTAKCDDGGAYWVQHRGERVLWVPPRARQLH
VRLLVCAHMGEACHRGVEATLNRLRRYCVWTTMEEDAK
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mRNA from alignment at H-paniculata_contig26908:2950..3364+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26908.7361.1 ID=mRNA_H-paniculata_contig26908.7361.1|Name=mRNA_H-paniculata_contig26908.7361.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=415bp|location=Sequence derived from alignment at H-paniculata_contig26908:2950..3364+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCATCGTGCACATCCCCGGCGAACAGAATAGTTGGGGAGATTTATTGTC GAGGTGGGTTCAGGAGCCGAGGATGGCGCCGGTAACGCGGGTGTACATGC TACCCACGCAGGACGAGGTCGAAGGGGGCGCAATGCCCACGAAAAAGGAA GTGGTCGCGAGCCAGGCGGAGGCCAAGGAGGAGCTCGCCAAGGCGGCCGC CGAATTCGGGACGGCAAAATGTGATGACGGAGGAGCCTATTGGGTGCAGC ATCGCGGGGAGCGGGTCCTGTGGGTGCCTCCACGCGCGCGTCAGCTGCAT GTGCGGCTGCTGGTGTGTGCGCACATGGGTGAGGCGTGCCATAGAGGCGT AGAGGCTACGCTGAATCGGCTGCGGCGGTACTGCGTTTGGACCACAATGG AGGAGGATGCGAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig26908:2950..3364+

>mRNA_H-paniculata_contig26908.7361.1 ID=mRNA_H-paniculata_contig26908.7361.1|Name=mRNA_H-paniculata_contig26908.7361.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig26908:2950..3364+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCATCGTGCACATCCCCGGCGAACAGAATAGTTGGGGAGATTTATTGTC
GAGGTGGGTTCAGGAGCCGAGGATGGCGCCGGTAACGCGGGTGTACATGC
TACCCACGCAGGACGAGGTCGAAGGGGGCGCAATGCCCACGAAAAAGGAA
GTGGTCGCGAGCCAGGCGGAGGCCAAGGAGGAGCTCGCCAAGGCGGCCGC
CGAATTCGGGACGGCAAAATGTGATGACGGAGGAGCCTATTGGGTGCAGC
ATCGCGGGGAGCGGGTCCTGTGGGTGCCTCCACGCGCGCGTCAGCTGCAT
GTGCGGCTGCTGGTGTGTGCGCACATGGGTGAGGCGTGCCATAGAGGCGT
AGAGGCTACGCTGAATCGGCTGCGGCGGTACTGCGTTTGGACCACAATGG
AGGAGGATGCGAAGACCATCGTGCACATCCCCGGCGAACAGAATAGTTGG
GGAGATTTATTGTCGAGGTGGGTTCAGGAGCCGAGGATGGCGCCGGTAAC
GCGGGTGTACATGCTACCCACGCAGGACGAGGTCGAAGGGGGCGCAATGC
CCACGAAAAAGGAAGTGGTCGCGAGCCAGGCGGAGGCCAAGGAGGAGCTC
GCCAAGGCGGCCGCCGAATTCGGGACGGCAAAATGTGATGACGGAGGAGC
CTATTGGGTGCAGCATCGCGGGGAGCGGGTCCTGTGGGTGCCTCCACGCG
CGCGTCAGCTGCATGTGCGGCTGCTGGTGTGTGCGCACATGGGTGAGGCG
TGCCATAGAGGCGTAGAGGCTACGCTGAATCGGCTGCGGCGGTACTGCGT
TTGGACCACAATGGAGGAGGATGCGAAG
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